Goldstone JV: Environmental sensing and response genes in cnidaria: the chemical defensome in the sea anemone Nematostella vectensis. Cell Biology and Toxicology. 2008, 24 (6): 483-502. 10.1007/s10565-008-9107-5.
Article
PubMed Central
CAS
PubMed
Google Scholar
Goldstone JV, Hamdoun A, Cole BJ, Howard-Ashby M, Nebert DW, Scally M, Dean M, Epel D, Hahn ME, Stegeman JJ: The chemical defensome: Environmental sensing and response genes in the Strongylocentrotus purpuratus genome. Dev Biol. 2006, 300 (1): 366-384. 10.1016/j.ydbio.2006.08.066.
Article
PubMed Central
CAS
PubMed
Google Scholar
Reitzel AM, Sullivan JC, Traylor-Knowles N, Finnerty JR: Genomic survey of candidate stress-response genes in the estuarine anemone Nematostella vectensis. Biological Bulletin. 2008, 214 (3): 233-254. 10.2307/25470666.
Article
PubMed
Google Scholar
Gorsky G, Fenaux R: The role of Appendicularia in marine food webs. The Biology of Pelagic Tunicates. Edited by: Bone Q. 1998, Oxford: Oxford University Press, 161-169.
Google Scholar
Robison BH, Reisenbichler KR, Sherlock RE: Giant larvacean houses: Rapid carbon transport to the deep sea floor. Science. 2005, 308 (5728): 1609-1611. 10.1126/science.1109104.
Article
CAS
PubMed
Google Scholar
Spada F, Steen H, Troedsson C, Kallesoe T, Spriet E, Mann M, Thompson EM: Molecular patterning of the oikoplastic epithelium of the larvacean tunicate Oikopleura dioica. Journal of Biological Chemistry. 2001, 276 (23): 20624-20632. 10.1074/jbc.M100438200.
Article
CAS
PubMed
Google Scholar
Thompson EM, Kallesoe T, Spada F: Diverse genes, expressed in distinct regions of the trunk epithelium define a monolayer cellular template for construction of the oikopleurid house. Dev Biol. 2001, 238 (2): 260-273. 10.1006/dbio.2001.0414.
Article
CAS
PubMed
Google Scholar
Bouquet JM, Spriet E, Troedsson C, Ottera H, Chourrout D, Thompson EM: Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica. Journal of Plankton Research. 2009, 31 (4): 359-370. 10.1093/plankt/fbn132.
Article
PubMed Central
PubMed
Google Scholar
Delsuc F, Brinkmann H, Chourrout D, Philippe H: Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature. 2006, 439 (7079): 965-968. 10.1038/nature04336.
Article
CAS
PubMed
Google Scholar
Denoeud F, Henriet S, Mungpakdee S, Aury J-M, Da Silva C, Brinkmann H, Mikhaleva J, Olsen LC, Jubin C, Canestro C, et al: Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate. Science. 2010, 330 (6009): 1381-1385. 10.1126/science.1194167.
Article
PubMed Central
CAS
PubMed
Google Scholar
Denison MS, Whitlock JP: Xenobiotic-inducible transcription of cytochrome P450 genes. Journal of Biological Chemistry. 1995, 270 (31): 18175-18178. 10.1074/jbc.270.31.18175.
Article
CAS
PubMed
Google Scholar
Nebert DW, Dalton TP: The role of cytochrome P450 enzymes in endogenous signalling pathways and environmental carcinogenesis. Nature Reviews Cancer. 2006, 6 (12): 947-960. 10.1038/nrc2015.
Article
CAS
PubMed
Google Scholar
Blumberg B, Sabbagh W, Juguilon H, Bolado J, van Meter CM, Ono ES, Evans RM: SXR, a novel steroid and xenobiotic-sensing nuclear receptor. Genes & Development. 1998, 12 (20): 3195-3205. 10.1101/gad.12.20.3195.
Article
CAS
Google Scholar
Palmer CNA, Hsu MH, Muerhoff AS, Griffin KJ, Johnson EF: Interaction of the peroxisome proliferator-activated receptor alpha with the retinoid × receptor alpha unmasks a cryptic peroxisome proliferator response element that overlaps an ARP-1-binding site in the CYP4A6 promoter. Journal of Biological Chemistry. 1994, 269 (27): 18083-18089.
CAS
PubMed
Google Scholar
Klaassen C, Lu H: Xenobiotic receptors CAR and PXR: Springer. 2010
Book
Google Scholar
Hankinson O: The aryl hydrocarbon receptor complex. Annual Review of Pharmacology and Toxicology. 1995, 35: 307-340. 10.1146/annurev.pa.35.040195.001515.
Article
CAS
PubMed
Google Scholar
Nebert DW, Dalton TP, Okey AB, Gonzalez FJ: Role of aryl hydrocarbon receptor-mediated induction of the CYP1 enzymes in environmental toxicity and cancer. Journal of Biological Chemistry. 2004, 279 (23): 23847-23850. 10.1074/jbc.R400004200.
Article
CAS
PubMed
Google Scholar
McIntosh BE, Hogenesch JB, Bradfield CA: Mammalian Per-Arnt-Sim Proteins in Environmental Adaptation. Annual Review of Physiology. 2010, 72: 625-645. 10.1146/annurev-physiol-021909-135922.
Article
CAS
PubMed
Google Scholar
Rowlands JC, Gustafsson JA: Aryl hydrocarbon receptor-mediated signal transduction. Critical Reviews in Toxicology. 1997, 27 (2): 109-134. 10.3109/10408449709021615.
Article
CAS
PubMed
Google Scholar
Hahn ME: Aryl hydrocarbon receptors: diversity and evolution. Chemico-Biological Interactions. 2002, 141 (1-2): 131-160. 10.1016/S0009-2797(02)00070-4.
Article
CAS
PubMed
Google Scholar
Hahn ME, Karchner SI, Merson RR, Franks DG, Montie E, Lapseritis JM, Zabel EW, Tillitt DE, Hannink M: Aryl hydrocarbon receptors: Diversity and evolution. Marine Environmental Research. 2004, 58 (2-5): 132-
Google Scholar
Hahn ME, Karchner SI, Evans BR, Franks DG, Merson RR, Lapseritis JM: Unexpected diversity of aryl hydrocarbon receptors in non-mammalian vertebrates: Insights from comparative genomics. Journal of Experimental Zoology Part a-Comparative Experimental Biology. 2006, 305A (2): 131-131.
Google Scholar
Itoh K, Wakabayashi N, Katoh Y, Ishii T, Igarashi K, Engel JD, Yamamoto M: Keap1 represses nuclear activation of antioxidant responsive elements by Nrf2 through binding to the amino-terminal Neh2 domain. Genes & Development. 1999, 13 (1): 76-86. 10.1101/gad.13.1.76.
Article
CAS
Google Scholar
Shimizu Y, Nakatsuru Y, Ichinose M, Takahashi Y, Kume H, Mimura J, Fujii-Kuriyama Y, Ishikawa T: Benzo a pyrene carcinogenicity is lost in mice lacking the aryl hydrocarbon receptor. Proceedings of the National Academy of Sciences of the United States of America. 2000, 97 (2): 779-782. 10.1073/pnas.97.2.779.
Article
PubMed Central
CAS
PubMed
Google Scholar
Harvey R: Polycyclic Aromatic Hydrocarbons: Chemistry and Carcinogenicity. 1991, Cambridge: Cambridge University Press
Google Scholar
Fent K, Weston AA, Caminada D: Ecotoxicology of human pharmaceuticals. Aquatic Toxicology. 2006, 76 (2): 122-159. 10.1016/j.aquatox.2005.09.009.
Article
CAS
PubMed
Google Scholar
Baldwin WS, Marko PB, Nelson DR: The cytochrome P450 (CYP) gene superfamily in Daphnia pulex. Bmc Genomics. 2009, 10:
Google Scholar
Goldstone JV, Goldstone HMH, Morrison AM, Tarrant A, Kern SE, Woodin BR, Stegeman JJ: Cytochrome p450 1 genes in early deuterostomes (tunicates and sea urchins) and vertebrates (chicken and frog): Origin and diversification of the CYP1 gene family. Molecular Biology and Evolution. 2007, 24 (12): 2619-2631. 10.1093/molbev/msm200.
Article
CAS
PubMed
Google Scholar
Kalaany NY, Mangelsdorf DJ: LXRs AND FXR: The Yin and Yang of cholesterol and fat metabolism. Annual Review of Physiology. 2006, 68: 159-191. 10.1146/annurev.physiol.68.033104.152158.
Article
CAS
PubMed
Google Scholar
Nguyen T, Nioi P, Pickett CB: The Nrf2-Antioxidant Response Element Signaling Pathway and Its Activation by Oxidative Stress. Journal of Biological Chemistry. 2009, 284 (20): 13291-13295. 10.1074/jbc.R900010200.
Article
PubMed Central
CAS
PubMed
Google Scholar
Oyake T, Itoh K, Motohashi H, Hayashi N, Hoshino H, Nishizawa M, Yamamoto M, Igarashi K: Bach proteins belong to a novel family of BTB-basic leucine zipper transcription factors that interact with MafK and regulate transcription through the NF-E2 site. Molecular and Cellular Biology. 1996, 16 (11): 6083-6095.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wu C: Heat shock transcription factors: Structure and regulation. Annual Review of Cell and Developmental Biology. Edited by: Spudich JA. 1995, 11: 441-469. 10.1146/annurev.cb.11.110195.002301.
Morimoto RI: Regulation of the heat shock transcriptional response: cross talk between a family of heat shock factors, molecular chaperones, and negative regulators. Genes & Development. 1998, 12 (24): 3788-3796. 10.1101/gad.12.24.3788.
Article
CAS
Google Scholar
Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA: DAVID: Database for annotation, visualization, and integrated discovery. Genome Biology. 2003, 4 (9):
Huang DW, Sherman BT, Lempicki RA: Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols. 2009, 4 (1): 44-57.
Article
CAS
Google Scholar
Ekins S, Bugrim A, Brovold L, Kirillov E, Nikolsky Y, Rakhmatulin E, Sorokina S, Ryabov A, Serebryiskaya T, Melnikov A, et al: Algorithms for network analysis in systems-ADME/Tox using the MetaCore and MetaDrug platforms. Xenobiotica. 2006, 36 (10-11): 877-901. 10.1080/00498250600861660.
Article
CAS
PubMed
Google Scholar
Sparfel L, Pinel-Marie M-L, Boize M, Koscielny S, Desmots S, Pery A, Fardel O: Transcriptional Signature of Human Macrophages Exposed to the Environmental Contaminant Benzo(a)pyrene. Toxicological Sciences. 2010, 114 (2): 247-259. 10.1093/toxsci/kfq007.
Article
CAS
PubMed
Google Scholar
Ganot P, Thompson EM: Patterning through differential endoreduplication in epithelial organogenesis of the chordate, Oikopleura dioica. Dev Biol. 2002, 252 (1): 59-71. 10.1006/dbio.2002.0834.
Article
CAS
PubMed
Google Scholar
Rutkowski DT, Kaufman RJ: A trip to the ER: coping with stress. Trends in Cell Biology. 2004, 14 (1): 20-28. 10.1016/j.tcb.2003.11.001.
Article
CAS
PubMed
Google Scholar
Lawson WE, Cheng D-S, Degryse AL, Tanjore H, Polosukhin VV, Xu XC, Newcomb DC, Jones BR, Roldan J, Lane KB, et al: Endoplasmic reticulum stress enhances fibrotic remodeling in the lungs. Proceedings of the National Academy of Sciences of the United States of America. 2011, 108 (26): 10562-10567. 10.1073/pnas.1107559108.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sims P, Grover PL, Pal K, Hewer A: Metabolic activation of benzo(a)pyrene proceeds by a diol-epoxide. Nature. 1974, 252 (5481): 326-328. 10.1038/252326a0.
Article
CAS
PubMed
Google Scholar
Hockley SL, Mathijs K, Staal YCM, Brewer D, Giddings I, van Delft JHM, Phillips DH: Interlaboratory and Interplatform Comparison of Microarray Gene Expression Analysis of HepG2 Cells Exposed to Benzo(a)pyrene. Omics-a Journal of Integrative Biology. 2009, 13 (2): 115-125. 10.1089/omi.2008.0060.
Article
CAS
PubMed
Google Scholar
van Delft JHM, Mathijs K, Staal YCM, van Herwijnen MHM, Brauers KJJ, Boorsma A, Kleinjans JCS: Time Series Analysis of Benzo A Pyrene-Induced Transcriptome Changes Suggests That a Network of Transcription Factors Regulates the Effects on Functional Gene Sets. Toxicological Sciences. 2010, 117 (2): 381-392. 10.1093/toxsci/kfq214.
Article
CAS
PubMed
Google Scholar
Cariello NF, Romach EH, Colton HM, Ni H, Yoon L, Falls JG, Casey W, Creech D, Anderson SP, Benavides GR, et al: Gene expression profiling of the PPAR-alpha agonist ciprofibrate in the cynomolgus monkey liver. Toxicological Sciences. 2005, 88 (1): 250-264. 10.1093/toxsci/kfi273.
Article
CAS
PubMed
Google Scholar
Mandard S, Muller M, Kersten S: Peroxisome proliferator-activated receptor alpha target genes. Cellular and Molecular Life Sciences. 2004, 61 (4): 393-416. 10.1007/s00018-003-3216-3.
Article
CAS
PubMed
Google Scholar
Troedsson C, Bouquet JM, Skinnes R, Acuna JL, Zech K, Frischer ME, Thompson EM: Regulation of filter-feeding house components in response to varying food regimes in the appendicularian, Oikopleura dioica. Journal of Plankton Research. 2009, 31 (12): 1453-1463. 10.1093/plankt/fbp085.
Article
CAS
Google Scholar
Kong ANT, Owuor E, Yu R, Hebbar V, Chen C, Hu R, Mandlekar S: Induction of xenobiotic enzymes by the map kinase pathway and the antioxidant or electrophile response element (ARE/EpRE). Drug Metabolism Reviews. 2001, 33 (3-4): 255-271. 10.1081/DMR-120000652.
Article
CAS
PubMed
Google Scholar
Tan ZQ, Chang XQ, Puga A, Xia Y: Activation of mitogen-activated protein kinases (MAPKs) by aromatic hydrocarbons: role in the regulation of aryl hydrocarbon receptor (AHR) function. Biochemical Pharmacology. 2002, 64 (5-6): 771-780. 10.1016/S0006-2952(02)01138-3.
Article
CAS
PubMed
Google Scholar
Dalton TD, Shertzer HG, Puga A: Regulation of gene expression by reactive oxygen. Annual Review of Pharmacology and Toxicology. 1999, 39: 67-101. 10.1146/annurev.pharmtox.39.1.67.
Article
CAS
PubMed
Google Scholar
Nguyen T, Sherratt PJ, Pickett CB: Regulatory mechanisms controlling gene expression mediated by the antioxidant response element. Annual Review of Pharmacology and Toxicology. 2003, 43: 233-260. 10.1146/annurev.pharmtox.43.100901.140229.
Article
CAS
PubMed
Google Scholar
Lu SC: Regulation of hepatic glutathione synthesis: current concepts and controversies. Faseb Journal. 1999, 13 (10): 1169-1183.
CAS
PubMed
Google Scholar
Anckar J, Sistonen L: Regulation of HSF1 Function in the Heat Stress Response: Implications in Aging and Disease. Annual Review of Biochemistry, Vol 80. Edited by: Kornberg RDRCRHRJETJW. 2011, 80: 1089-1115. 10.1146/annurev-biochem-060809-095203.
Yagi K, Satou Y, Mazet F, Shimeld SM, Degnan B, Rokhsar D, Levine M, Kohara Y, Satoh N: A genomewide survey of developmentally relevant genes in Ciona intestinalis - III. Genes for Fox, ETS, nuclear receptors and NF kappa B. Development Genes and Evolution. 2003, 213 (5-6): 235-244. 10.1007/s00427-003-0322-z.
Article
CAS
PubMed
Google Scholar
Livak KJ, Schmittgen TD: Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-ΔΔCT. Method. 2001, 4 (25): 402-408.
Article
Google Scholar
Satou Y, Imai KS, Levine M, Kohara Y, Rokhsar D, Satoh N: A genomewide survey of developmentally relevant genes in Ciona intestinalis - I. Genes for bHLH transcription factors. Development Genes and Evolution. 2003, 213 (5-6): 213-221. 10.1007/s00427-003-0319-7.
Article
CAS
PubMed
Google Scholar