Thrifty metabolic programming in rats is induced by both maternal undernutrition and postnatal leptin treatment, but masked in the presence of both: implications for models of developmental programming
© Ellis et al.; licensee BioMed Central Ltd. 2014
Received: 25 October 2013
Accepted: 6 January 2014
Published: 21 January 2014
Maternal undernutrition leads to an increased risk of metabolic disorders in offspring including obesity and insulin resistance, thought to be due to a programmed thrifty phenotype which is inappropriate for a subsequent richer nutritional environment. In a rat model, both male and female offspring of undernourished mothers are programmed to become obese, however postnatal leptin treatment gives discordant results between males and females. Leptin treatment is able to rescue the adverse programming effects in the female offspring of undernourished mothers, but not in their male offspring. Additionally, in these rats, postnatal leptin treatment of offspring from normally-nourished mothers programmes their male offspring to develop obesity in later life, while there is no comparable effect in their female offspring.
We show by microarray analysis of the female liver transcriptome that both maternal undernutrition and postnatal leptin treatment independently induce a similar thrifty transcriptional programme affecting carbohydrate metabolism, amino acid metabolism and oxidative stress genes. Paradoxically, however, the combination of both stimuli restores a more normal transcriptional environment. This demonstrates that “leptin reversal” is a global phenomenon affecting all genes involved in fetal programming by maternal undernourishment and leptin treatment. The thrifty transcriptional programme was associated with pro-inflammatory markers and downregulation of adaptive immune mediators, particularly MHC class I genes, suggesting a deficit in antigen presentation in these offspring.
We propose a revised model of developmental programming reconciling the male and female observations, in which there are two competing programmes which collectively drive liver transcription. The first element is a thrifty metabolic phenotype induced by early life growth restriction independently of leptin levels. The second is a homeostatic set point calibrated in response to postnatal leptin surge, which is able to over-ride the metabolic programme. This “calibration model” for the postnatal leptin surge, if applicable in humans, may have implications for understanding responses to catch-up growth in infants. Additionally, the identification of an antigen presentation deficit associated with metabolic thriftiness may relate to a previously observed correlation between birth season (a proxy for gestational undernutrition) and infectious disease mortality in rural African communities.
KeywordsLeptin Fetal programming Development Obesity Thrifty phenotype Antigen presentation Inflammation
Alterations in nutrition during fetal and perinatal life are linked to adverse health outcomes in offspring in adulthood, this being known as the Developmental Origins of Health and Disease (DOHaD) paradigm. In particular, data from epidemiological cohorts and a range of animal models has shown that maternal undernutrition results in an increased risk of obesity and metabolic disease in offspring in later life[2, 3]. The most commonly used model of maternal undernutrition is in the rat where studies have utilised moderate through to severe undernutrition (20-70% calorie restricted diets) to examine mechanisms underlying the programming of later disease risk[4–6]. Protein undernutrition appears to be particularly important, with low protein isocaloric diet models showing similar effects to caloric restriction models in both rat and mouse[7, 8].
The adverse phenotypic outcomes, particularly those related to metabolic abnormalities, are thought to result in part from the mismatch between a deprived early nutritional environment which programmes a “thrifty phenotype” (also called a “predictive adaptive response”), and a richer later environment for which this metabolic programme is inappropriate[9–11]. In addition to the metabolic sequelae of maternal undernutrition, in some circumstances such deprivation can have long-lasting consequences for the immune system, for example the greatly increased prevalence of infectious disease among Gambian individuals born in the “hungry season”[12–14]. This latter result was however not replicated in studies in rural Bangladesh or Senegal[15, 16], indicating a wide degree of heterogeneity in the immune response to maternal undernutrition.
We have previously shown in a rat model (70% caloric restriction) that neonatal administration of the adipokine leptin reverses the metabolic abnormalities seen in the offspring of undernourished mothers[17, 18]. Both male and female offspring of mothers subject to maternal undernutrition during pregnancy developed increased adiposity and markers of the metabolic syndrome, particularly when fed a high fat diet postweaning. Neonatal treatment with leptin during a key period of developmental plasticity (postnatal age 3-13 days) reversed the programmed phenotype and restored near normal metabolic parameters[17, 18]. This observation was associated with a reversal of the direction of the leptin response (hereafter “leptin reversal”) in the offspring of undernourished mothers (‘UN offspring’). Neonatal leptin treatment increased adult levels of 11β-HSD2 transcription in the livers of normally-nourished pups, but decreased it in livers of the UN offspring: similar leptin reversal effects on both transcription and promoter methylation were observed for PPARα, GR and PEPCK.
The extent of the leptin reversal–whether it affected all leptin-regulated genes, or a specific subset of these.
Which of the genes affected by the leptin reversal were associated with the metabolic syndrome seen in UN/Sal/HF offspring.
Whether there were precursor changes seen in UN/Sal/Chow offspring, which could potentially be markers for those at risk of developing metabolic syndrome and/or diabetes.
Whether there were other non-metabolic genes and pathways affected by maternal undernutrition and/or leptin reversal which might therefore be implicated in further phenotypes, We were particularly interested in pathways relating to immune system regulation, given the programmed effects (in human) of undernutrition on infectious disease prevalence.
The transcriptional data indicated a significant similarity between the AD/Lep cohorts and the UN/Sal cohorts. This was unexpected since the phenotypic outcomes differ markedly between these two interventions, in a sex-specific manner. In particular, in females UN/Sal offspring become severely obese when fed a high fat diet, while AD/Lep do not: the reverse is the case in males. These transcriptional findings therefore led us to re-examine our previously published growth curves for both the male and female experimental series. Previously, we had analysed the preweaning and postweaning data separately. In this re-analysis we focus on the weaning period itself: a critical juncture during which growing pups take over full responsibility for their own nutritional intake. We find that growth trajectories differ between male and female pups during weaning, and interpret the male and female data collectively as the consequences of two competing programmes: a thriftiness programme which governs the efficiency of fuel, and a homeostatic set point governing body composition.
Numbers of significantly regulated genes, categorised according to which factors and/or interactions were significant in the three-way ANOVA
A Maternal nutrition
Maternal nutritional status has an effect independent of leptin treatment and postweaning diet
B Leptin treatment
Leptin treatment has an effect independent of maternal nutritional status and postweaning diet
C Postweaning diet
Postweaning diet has an effect independent of maternal nutritional status and leptin treatment
AB (2-way interaction)
The effect of leptin treatment is dependent on maternal nutritional status (or vice versa)
AC (2-way interaction)
The effect of postweaning diet is dependent on maternal nutritional status (or vice versa)
BC (2-way interaction)
The effect of postweaning diet is dependent on leptin treatment (or vice versa)
ABC (3-way interaction)
The effects of all three factors are mutually dependent
Although significant changes were detected by one-way ANOVA, no individual factor or interaction term was subsequently significant in a three-factor ANOVA
Maternal undernutrition and postnatal leptin treatment predominantly affect the same target set
Whether considering all significant transcripts, or only those showing more than 1.25 fold change, the largest group of transcriptional changes (category C) represents the non-interacting effects of postweaning diet–unsurprising as diet at sacrifice directly affects the animals’ metabolic status and consequently hepatic expression profiles. However, category AB (significant regulation by the interaction between maternal nutrition and leptin treatment) contained very nearly the same number of transcripts, indicating that (a) these two factors are able to collectively programme transcriptional responses occurring many days post-intervention, and (b) these programming effects are equally as important as postweaning diet in determining the final liver expression profile. Importantly, category AB contains many more genes than either category A or B alone, indicating that maternal undernutrition and postnatal leptin treatment largely affect the same genes and that these effects are mutually dependent.
Phenotypic data for the programmed cohorts also show significant interactions between maternal diet and postnatal leptin treatment
The phenotypic characterisation of this experimental series was expanded and re-examined, again using three-factor ANOVA (Additional file2: Table S2). Importantly, while total body fat percentage is increased as expected by a postweaning high fat diet (postweaning diet F1,56 = 150.5, p = 1.67 × 10-17), it also shows a significant interaction between maternal undernutrition and postnatal leptin treatment (AB interaction F1,56 = 22.25, p = 1.63 × 10-5). Total body fat percentage is increased by postnatal leptin treatment (AD/Lep) and maternal undernutrition (UN/Sal) but decreased by the combination of both (UN/Lep). Plasma leptin levels follow the same pattern as body fat percent (AB interaction F1,56 = 11.32, p = 1.39 × 10-3), and fasting C-peptide levels also show a highly significant AB interaction term (AB interaction F1,56 = 13.13, p = 6.29 × 10-4) and a similar profile of dysregulation. The AB interaction term for fasting insulin levels was just significant before FDR correction but not significant after correction. Plasma ghrelin and other metabolic parameters (liver glycerol and triglycerides, plasma glycerol, triglycerides and free fatty acids) were all predominantly regulated by postweaning diet.
There is a complex spectrum of “reversal” interactions between transcriptional programming by maternal nutritional status and by postnatal leptin treatment
The interactions between maternal nutrition status and leptin treatment could be either synergistic or opposing. For the 949 genes in category AB, we compared the expression change induced by leptin treatment in pups born to UN mothers (average Lep/Sal expression ratio averaged across UN cohorts) to that in pups of ad libitum fed mothers (the same ratio averaged across AD cohorts) to determine the interaction type. The large majority of genes (871/949 = 91.8%) showed a “leptin reversal” pattern where the average Lep/Sal ratio in UN cohorts was opposite in sign to that in AD cohorts. Only a small proportion of genes showed a synergistic interaction (57/949 = 6.0%) or a partially opposing interaction (21/949 = 2.2%), defined as genes where the average Lep/Sal ratio in UN cohorts was the same sign as in AD cohorts and of higher magnitude (synergistic) or lower magnitude (partially opposing).
Group 1 and 3 genes are induced both by maternal undernutrition and by leptin treatment (compare USC/H and ALC/H to ASC/H), however the combination of both factors (compare ULC/H to ASC/H) causes either no induction of these genes (Group 3) or even a net repression (Group 1). Group 2 genes show no net effect of maternal undernutrition on its own (compare USC/H to ASC/H), but are induced by leptin in AD cohorts (compare ALC/H to ASC/H) and repressed by leptin in UN cohorts (compare ULC/H to USC/H). Group 4 and 5 genes are repressed by both factors acting alone, but show a reduced repression or even a net induction when both factors are present (opposite to groups 1 and 3). Group 6 genes are induced specifically by the combination of both factors.
The vast majority of AB-interacting genes show similar changes in AD/Lep cohorts and in UN/Sal cohorts relative to the control AD/Sal cohorts. These results therefore support the hypothesis of a binary polyphenism in liver transcriptional activity, where the phenotypic switch is seen in response both to undernutrition and to postnatal leptin treatment, but not the combination of both.
Functional annotation analysis of leptin reversal genes
Functional clusters over-represented among genes with a significant interaction between maternal undernutrition and postnatal leptin treatment
Genes with AB interaction
Induced by maternal undernutrition and by leptin treatment, but not by both combined (Groups 1 & 3)
Mitochondrially-targeted genes (enrichment score 2.64 → 4.55)
Aadac; Aadat; Abcb11; Acat2; Acsl3; Acsl5; Adhfe1; Agtr1a; Aifm1; Ak3l1; Aldh1b1; Aldh1l2; Atad1; Atp6v1a1; Bche; Bckdhb; Bphl; Cabc1; Clpx; Crls1; Cry1; Cyb5r3; Cyp2r1; Dhcr24; Dhtkd1; Dnaja3; Fam82a; Fut8; Glud1; Gm2a; Golph3; Gpam; Gpd2; Hmbs; Hmgcr; NIT2; LOC501346; LOC685778; LOC688587; TTC19; Lrp5; Lypla1; Maoa; Maob; Me1; Mgst1; Mpv17l; Mrpl18; Mrpl50; Mterfd3; Mtfr1; Nnt; Nsdhl; Otc; Pck2; Pdhb; Qdpr; Rab5a; RGD1308114; RGD1309676; PEX1; MYO6; MUT; TMEM70; Rilp; Rpl10a; Sars2; Scp2; Scrn1; Sec22b; Senp2; Sfxn5; Slc16a1; Slc25a17; Slc35a3; Slc35b3; Sod2; St3gal6; Synj2bp; Tbc1d15; Tm7sf2; Tmpo; Tnks2; Txndc1; Uros
Microsome/peroxisome/cytochrome p450 pathway (enrichment score 2.03 → 4.46)
A1cf; Aadac; Abca6; Abcb11; Acsl3; Acsl5; Agl; Aifm1; Aldh1a1; Baat; Bche; Cabc1; Cadm1; Clcn2; Cnbp; Csnk1g3; Ctsc; Cyb5r3; Cyp2d22; Cyp2d5; Cyp2r1; Dhcr24; Dio1; Dpys; Ephx1; Erap1; Fmr1; Gbe1; Hmgcr; Isoc1; Maoa; Mbl1; Mbl2; Me1; Mgst1; Mpv17l; Nsdhl; Nt5e; Pck2; Pgd; Pgk1; Pipox; Ppp1r3b; Ptprf; Pygl; Rab5a; Rdh3; PEX1; GNPNAT1; Rgs16; Sat1; Scp2; Sec22b; Slc10a1; Slc25a17; Sod2; Sord; Srd5a1; Tm7sf2; Tmco1; Tmed5; Tnks2; Txndc1; Ugt2b; Ugt2b17; Ugt2b36
Steroid synthesis and response (enrichment score 1.86 → 2.69)
Aadac; Abcb11; Abhd5; Acsl3; Acsl5; Afp; Agl; Agtr1a; Ak3l1; Aldh1a1; Angptl4; Avpr1a; Baat; Bche; Bckdhb; Btg1; Cfb; Crls1; Ctsc; Cyb5r3; Cyp2d22; Cyp2r1; Dhcr24; Dnaja3; Dnajb5; Ephx1; Erap1; Foxo1a; Fut8; Gpam; Hmgcr; Ihh; Laptm4b; LOC501346; ANGPTL3; LOC686548; LOC688587; Lrp5; Me1; Mgst1; Mif; Nfe2l2; Nsdhl; Osbp; Pck2; Pggt1b; Prkaa1; Rab5a; Rcan1; RGD1560513; MYO6; STARD5; Scrn1; Sec22b; Senp2; Serpina3m; Serpinf1; Slc34a2; Slc35a3; Smad2; Sord; Srd5a1; St3gal6; Sult1a1; Tm7sf2; Tmpo; Tnks2; Txndc1; Uros
Starch metabolism (enrichment score 3.09)
Adh6; Agl; Aldh1a1; Aldh1b1; Amy1a; Cyp2d22; Cyp2d5; Dpys; Ephx1; Fut8; Gbe1; Hmbs; Maoa; Maob; Mgst1; Pygl; Rdh3; Srd5a1; St3gal6; Ugt2a3; Ugt2b; Ugt2b10; Ugt2b17; Ugt2b36; Uros
Monosaccharide metabolism (enrichment score 2.84)
Adh6; Agl; Aifm1; Aldh1a1; Aldh1b1; Atf4; Atp6v1a1; Bckdhb; Csnk1g3; Cyb5r3; Dhtkd1; Dio1; Dpys; Gbe1; Gm2a; Gpd2; Hmgcr; LOC685778; Maoa; Me1; Pck2; Pdhb; Pgd; Pgk1; Ppp1r3b; Prkaa1; Pygl; UAP1; GNPNAT1; Sat1; Slc16a1; Sod2; Sord
Pyruvate metabolism (enrichment score 2.23)
Acat2; Acot12; Adh6; Aldh1b1; Atf4; Gpd2; LOC685778; Me1; Pck2; Pdhb; Pgk1; Slc16a1
Complement cascade and innate immunity (enrichment score 0.98)
Baat; C2; Cabc1; Cadm1; Cfb; Dhcr24; Dnaja3; Erap1; F9; Ihh; LEAP2; LOC686548; Mbl1; Mbl2; Mif; Mst1; Nrep; RGD1560513; Serpina5; Sod2
Repressed by leptin in UN offspring, induced by leptin in control offspring (Group2)
Metal ion binding (enrichment score 3.00)
Aox1; Arsk; Atp2b1; Cdo1; Cnot6; Cyp2b3; Cyp3a3; Fancl; Gatad2b; Ireb2; ZZZ3; PHF20L1; Mdm4; Msl2l1; Nr5a2; Pcgf4; Pde8a; Phospho2; Prickle1; RGD1563633; Slc10a5; Slc30a7; Slc40a1; Thrb; Tmlhe; Trim33; Upb1; Zfp131; Zfp410; Zfp99
Repressed by maternal undernutrition and by leptin treatment, but not by both combined (Groups 4 & 5)
MHC antigens and lymphocyte activation (enrichment score 2.43 → 4.00)
Ccl5; Ccrl2; Cd69; Cd8a; Coro1a; Ctsl1; Fas; Gpsm3; Gstp1; H2-M3; Icam2; Igh-1a; Il1b; Itgb2; Klrd1; RGD1561628; Msh2; P2ry14; SH2D1A; Rpl9; RT1-149; RT1-A2; RT1-A3; RT1-Ba; RT1-CE15; RT1-CE7; RT1-M6-2; Sart1; Spn; Tap2; Tnfaip8l2; Tnfsf13; Unc13d; Unc93b1; Vcam1; Wdr46; Xcl1
Ribosomal biogenesis/translational elongation (enrichment score 2.27)
Anxa1; Bloc1s2; Cpsf3; Epb4.1 l1; Gtf2b; Hnrpab; RPL22L2; Mrps25; Nufip1; Nup210; Polr2h; Polr2i; Polr2j; Pop4; RGD1559639; RGD1559951; Rnasen; Rpl17; Rpl18a; Rpl9; Rps14; Rps16; Rps17; Rps27; Sart1; Snrp1c; Tdrd3; Tubb5; Utp14a; Uxt; Wdr46
Induced by the combination of maternal undernutrition and leptin treatment, but not by either factor alone (Group 6)
Ribosomal biogenesis/nucleolus (enrichment score 4.87)
Agxt; Cct2; Cdc25a; Cdk105; Colq; Copb1; Dctn6; Epb4.1 l1; Fabp2; Ftl1; Gabarap; Gtf2a2; Gys2; Hnrnpa1; Hspb1; Imp3; Krt10; RPL22L1; LOC364236; RGD1563484; RPS7; RGD1564519; RGD1564606; POLR2E; Mapre3; Med6; Mettl11a; MGC114381; Mrpl49; Myo5b; Myrip; Nbn; Pola2; Psma6; Psma7; Psmb2; Ptk2; Ranbp1; Rassf5; WDR83; RGD1559574; RGD1559846; RGD1561086; RPS19L1; WTAP; RGD1565170; ZCCHC17; RGD1566137; RGD1566326; Rpain; Rpl27; Rpl35a; Rsl1d1; Sfrs2; Sqstm1; Tp53; Tuba4a; Vps33b
Cell cycle/Mitosis (enrichment score 1.70)
Cdc25a; Gadd45gip1; Mapre3; MGC114381; Nbn; Psma6; Psma7; Psmb2; Ranbp1; Rgs10; Tp53; Usp16
A series of metabolic and regulatory pathways were significantly over-represented in groups 1 and 3 (i.e. upregulated in AD/Lep and UN/Sal livers), particularly involving mitochondrially targeted genes. The observed shifts are consistent with thrifty metabolic reprogramming in these cohorts, and included several key enzymes involved in glycogenolysis and glycolysis, such as glygogen debranching enzyme (Agl), glycogen phosphorylase (Pygl), phosphoglycerate kinase (Pgk) and two subunits of pyruvate dehydrogenase (Pdhb and LOC685778). Also upregulated were important enzymes for amino acid and nitrogen metabolism, including glutamate dehydrogenase (Glud) and ornithine transcarbamoylase (Otc); lipid metabolism including glycerol phosphate dehydrogenase (Gpd2), long-chain fatty acid-CoA ligases (Acsl3 and Acsl5) and acetyl-CoA acetyltransferase (Acat2); and oxidative stress genes including phosphogluconate dehydrogenase (Pgd) and mitochondrial outer membrane glutathione S-transferase (Mgst1). Consistent with the latter, although it did not fall into any of the annotated functional groups in the DAVID analysis, carbonic anhydrase 3 (Ca3) was also upregulated in AD/Lep and UN/Sal livers.
Immune-related pathways showed a concerted pattern of change across the data set. Groups 4 and 5 (i.e. downregulated in AD/Lep and UN/Sal livers) were enriched for genes involved in the adaptive immune response, antigen presentation and lymphocyte activation. Particularly striking was a strong downregulation of MHC genes (~4-8 fold change of several class I genes, but also some class Ib and class II genes), and also a slight downregulation of the Tap2 peptide transporter necessary for antigen presentation by class I molecules. In this light it is interesting to note that groups 1-3 (with the opposite expression pattern) showed a trend towards enrichment for genes involved in the complement cascade and innate immunity such as complement gene C2. However, this functional group was not statistically significant (enrichment score of 0.98, corresponding to p-value = 0.10). We note that alpha-fetoprotein (Afp), a specific marker for liver inflammation also falls into group 3, although it was not annotated as inflammation-related in the DAVID analysis.
Pathways associated with ribosome biogenesis and function were significantly over-represented in group 6 and (to a lesser extent) groups 4 and 5. Finally, mitotic cell cycle genes showed weak over-represention in group 6. The significance level of this was borderline, with an enrichment score of 1.70 (p-value = 0.02).
Collectively, these obervations indicate that there is a programmed thrifty liver phenotype in AD/Lep and UN/Sal livers that includes increased glycogenolysis, an increase in protein breakdown and fat synthesis, and a switch away from adaptive immune function towards innate immunity/inflammation, together with increased oxidative stress within the cell.
“Healthily thrifty” versus “unhealthily thrifty”: is there a difference?
Our finding that both AD/Lep and UN/Sal treatments appear to have similar transcriptional effects was unexpected, since in female rats only UN/Sal/HF develops metabolic syndrome while AD/Lep/HF does not. We therefore considered it possible that AD/Lep might represent a state of “healthy thriftiness”–i.e. a thrifty metabolism that is nevertheless under control and able to cope with a high fat diet without developing obesity; and that UN/Sal might represent “unhealthy thriftiness”–i.e. a thrifty metabolism that lacks safeguards and runs out of control when confronted with a high fat diet.
To test this possibility, we carried out a pairwise comparison of the AD/Lep/Chow and UN/Sal/Chow cohorts to see if there were any expression differences which might explain why the latter is predisposed to metabolic syndrome. However, we found no genes that were significantly differentially expressed (FDR p-value < 0.05) between these two cohorts, suggesting that the difference is one of degree rather than kind. Consistent with this, of 61 genes significantly differentially expressed (FDR p-value < 0.05) between UN/Sal/Chow and the control AD/Sal/Chow cohort, 58 showed the same direction of change in AD/Lep/Chow.
Is thriftiness a consequence of growth restriction rather than leptin signalling per se?
It is challenging to explain why the UN/Sal and AD/Lep cohorts both show a thrifty transcriptional profile, given that postnatal leptin administration in the latter case will mimic excess nutrition rather than undernutrition. One possible explanation is that the dose/response curve for leptin is intrinsically bathtub-shaped, with adverse effects mediated both by excess and by insufficient leptin stimulation. This would be consistent with work showing that metabolic syndrome can be triggered by maternal overnutrition as well as maternal undernutrition. However, an alternative and in our view more attractive explanation is that the commonalities in expression profiles for these cohorts reflect a shared early life history of growth retardation. In the case of the UN/Sal cohorts, the growth retardation is a direct consequence of the maternal undernutrition, while in the case of AD/Lep cohorts it occurs postnatally and is a secondary consequence of the leptin treatment.
The leptin rescue paradox: a conflict between thriftiness and set point programming
If maternal undernutrition and postnatal leptin treatment can both reprogramme liver gene expression to be thrifty, why then does the combination of both not do so? One possibility is that the postnatal leptin treatment might expunge the programme set during fetal life and then somehow fail to impose the postnatal programming seen in AD/Lep. Figure 2B shows that the postnatal leptin administration has the same growth-retarding effects in UN/Lep as in AD/Lep, rendering this hypothesis unlikely. In fact, the degree of growth suppression is considerably greater in the UN group, suggesting that the effect of leptin is potentiated by the prior starvation episode. If the growth restriction seen in AD/Lep is sufficient to trigger hepatic reprogramming, then it is reasonable to assume that the even greater effect in UN/Lep should also leave the liver in a thrifty state.
Figure 2B also shows that there is a significant drop in relative growth of the UN/Lep cohorts around weaning, which first becomes visible in the 1-2 days immediately prior to separation from the dam (i.e. when the pups begin to self-wean), and continues throughout the following week. This juncture marks the period in which pups take over full responsibility for their own metabolic balance between intake and expenditure, rather than it being partly controlled by maternal milk availability and composition. This postweaning drop in the UN/Lep cohort is not simply due to increased catch-up growth in UN/Sal, but reflects a genuine drop in weight relative to AD/Sal (Figure 2C). These observations support an explanation for the apparent paradox in which the two growth restriction episodes (both fetal and postnatal) in the UN/Lep cohorts do lead to thrifty metabolic programming in the livers of this group, but this is masked by non-hepatic programming effects of leptin on food intake and energy expenditure.
Re-interpreting existing male growth data in the light of the female transcriptional findings
The pathogenic programming effects of maternal undernutrition are also more severe in males than females, in that they are not restricted to males on the HF diet. Figure 3C shows the weight of UN/Sal/Chow cohorts relative to control AD/Sal/Chow for males and females at day 30 and at the end of the experimental period. Females and males both showed a substantial growth restriction (see also Figure 2C, F) that is somewhat more severe in males (82.9% ±3.7%) than females (88.0% ± 1.3%) at day 30. These males then showed a continued slow weight gain throughout life relative to control, reaching 96.1 ± 4.8% of control by day 108–note that this was the end of the male experimental series. In contrast, the females maintained a stable weight relative to control from day 30 onwards (92.3% ± 1.3% on day 108, and 89.8% ± 2.4% on day 171–the end of the female experiment).
Collectively, these results suggest that while the pathogenic “thrift-inducing” effects of early growth restriction are shared between males and females, the non-hepatic mechanisms underlying the leptin rescue in UN/Lep cohorts may be less effective (or even absent) in males compared to females. In the Discussion (below) we propose a revised and extended model for developmental programming, which reconciles the hitherto-conflicting male and female growth data.
Genes associated with the prevention of metabolic syndrome by leptin treatment in the UN/Lep/HF cohort
Although the AD/Lep cohorts globally show many of the same metabolic and transcriptional changes as the UN/Sal cohorts, nevertheless in females metabolic syndrome is only triggered in UN/Sal/HF cohort and is prevented by postnatal leptin treatment (“leptin rescue”) in UN/Lep/HF. It is important to determine the hepatic transcriptional changes associated with the leptin rescue, since these may be useful biomarkers for metabolic syndrome and/or for the predisposed state seen in UN/Sal/Chow. Genes of interest in this regard are those that show a significant perturbation in expression associated with metabolic syndrome, which is exacerbated by maternal undernutrition and rescued by postnatal leptin treatment. To identify these genes, we took the initial set of 2221 genes showing at least some significant change in the one-way ANOVA and imposed three further filters:
Maternal diet and leptin treatment both called as significant, either individually or as part of an interaction term. 1010 genes passed this filter; the 949 genes with a significant AB interaction plus a further 61 genes where both factors were individually significant but the AB interaction term was not significant.
At least a 1.25 fold change in expression level between the affected UN/Sal/HF cohort and the control AD/Sal/Chow cohort. 177 genes passed this filter.
Gene expression levels in the UN/Sal/HF cohort with metabolic syndrome must fall at an extreme (highest or lowest expression amongst all 8 experimental cohorts). This yielded a final set of 98 genes, 56 of which were upregulated in metabolic syndrome and 42 downregulated (Table 3 and Additional file5: Table S5).
Genes which show a significant interaction between maternal nutritional status and postnatal leptin treatment effects, an expression change of at least 1.25 fold in the UN/Sal/HF cohort (with metabolic syndrome), and where this cohort is an outlier from the other experimental groups
Fold change in USC
Fold change in USH
Rattus norvegicus interferon-induced protein with tetratricopeptide repeats 1 (Ifit1), mRNA.
Rattus norvegicus protein phosphatase 1, regulatory (inhibitor) subunit 3B (Ppp1r3b), mRNA.
Rattus norvegicus carbonic anhydrase 3 (Ca3), mRNA.
PREDICTED: Rattus norvegicus SH3 and cysteine rich domain 3 (predicted) (Stac3_predicted), mRNA.
PREDICTED: Rattus norvegicus similar to tubulin, beta 2 (TUBB2A), mRNA.
PREDICTED: Rattus norvegicus similar to Liver-expressed antimicrobial peptide 2 precursor (LEAP-2) (LEAP2), mRNA.
Rattus norvegicus solute carrier family 34 (sodium phosphate), member 2 (Slc34a2), mRNA.
PREDICTED: Rattus norvegicus phosphogluconate dehydrogenase (Pgd), mRNA.
Rattus norvegicus alpha-fetoprotein (Afp), mRNA.
PREDICTED: Rattus norvegicus similar to Vanin-3 (predicted) (VNN3_predicted), mRNA.
Rattus norvegicus arginine vasopressin receptor 1A (Avpr1a), mRNA.
Rattus norvegicus lysosomal-associated protein transmembrane 4B (Laptm4b), mRNA.
PREDICTED: Rattus norvegicus insulin-like growth factor 2, binding protein 3 (Igf2bp3), mRNA.
Rattus norvegicus aldehyde dehydrogenase 1 family, member B1 (Aldh1b1), nuclear gene encoding mitochondrial protein, mRNA.
Rattus norvegicus amylase, alpha 1A (salivary) (Amy1a), mRNA.
Rattus norvegicus arylacetamide deacetylase (esterase) (Aadac), mRNA.
Rattus norvegicus pipecolic acid oxidase (Pipox), mRNA.
PREDICTED: Rattus norvegicus seizure related 6 homolog (mouse) (Sez6), mRNA.
Rattus norvegicus olfactory receptor 59 (Olr59), mRNA.
PREDICTED: Rattus norvegicus similar to Rab18 (RGD1563713), mRNA.
Rattus norvegicus glycerol-3-phosphate dehydrogenase 2, mitochondrial (Gpd2), nuclear gene encoding mitochondrial protein, mRNA.
Rattus norvegicus butyrylcholinesterase (Bche), mRNA.
Rattus norvegicus ornithine carbamoyltransferase (Otc), nuclear gene encoding mitochondrial protein, mRNA.
AB, AC, BC
Rattus norvegicus DNA methyltransferase 3B (Dnmt3b), mRNA.
Rattus norvegicus ClpX caseinolytic peptidase X homolog (E. coli) (Clpx), mRNA.
Rattus norvegicus solute carrier family 7 (cationic amino acid transporter, y + system), member 7 (Slc7a7), mRNA.
Rattus norvegicus dihydropyrimidinase (Dpys), mRNA.
Rattus norvegicus family with sequence similarity 82, member A (Fam82a), mRNA.
Rattus norvegicus solute carrier family 16 (monocarboxylic acid transporters), member 1 (Slc16a1), mRNA.
Rattus norvegicus alcohol dehydrogenase, iron containing, 1 (Adhfe1), mRNA.
Rattus norvegicus inhibin beta-A (Inhba), mRNA.
PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2210416 J16 (predicted) (TMEM70_predicted), mRNA.
PREDICTED: Rattus norvegicus similar to glyceraldehyde-3-phosphate dehydrogenase (predicted) (RGD1560797_predicted), mRNA.
PREDICTED: Rattus norvegicus similar to KIAA1324 protein (predicted) (RGD1310209_predicted), mRNA.
Rattus norvegicus monoamine oxidase B (Maob), nuclear gene encoding mitochondrial protein, mRNA.
PREDICTED: Rattus norvegicus low density lipoprotein receptor-related protein 5 (predicted) (Lrp5_predicted), mRNA.
Rattus norvegicus killer cell lectin-like receptor subfamily G, member 1 (Klrg1), mRNA.
Rattus norvegicus activating transcription factor 4 (tax-responsive enhancer element B67) (Atf4), mRNA.
PREDICTED: Rattus norvegicus PHD finger protein 11 (predicted) (Phf11_predicted), mRNA.
PREDICTED: Rattus norvegicus RAR-related orphan receptor alpha (predicted) (Rora_predicted), mRNA.
PREDICTED: Rattus norvegicus serine (or cysteine) proteinase inhibitor, clade A, member 3 M (Serpina3m), mRNA.
Rattus norvegicus similar to RIKEN cDNA 1100001H23 (PLBD1), mRNA.
PREDICTED: Rattus norvegicus similar to angiopoietin-related protein 3 (ANGPTL3), mRNA.
Rattus norvegicus angiotensin II receptor, type 1 (AT1A) (Agtr1a), mRNA.
Rattus norvegicus apolipoprotein N (Apon), mRNA.
Rattus norvegicus lectin, galactose binding, soluble 5 (Lgals5), mRNA.
Rattus norvegicus chaperone, ABC1 activity of bc1 complex homolog (S. pombe) (Cabc1), nuclear gene encoding mitochondrial protein, mRNA.
Rattus norvegicus syndecan binding protein (Sdcbp), mRNA.
PREDICTED: Rattus norvegicus hypothetical CP (CP), mRNA.
PREDICTED: Rattus norvegicus interferon regulatory factor 6 (predicted) (Irf6_predicted), mRNA.
PREDICTED: Rattus norvegicus hydroxysteroid (17-beta) dehydrogenase 13 (Hsd17b13), mRNA.
Rattus norvegicus Macrophage stimulating 1 (hepatocyte growth factor-like) (Mst1), mRNA.
Rattus norvegicus B-cell translocation gene 1, anti-proliferative (Btg1), mRNA.
PREDICTED: Rattus norvegicus similar to MYLE protein (Dexamethasone-induced protein) (predicted) (MUT_predicted), mRNA.
Rattus norvegicus peroxisomal membrane protein 4 (Pxmp4), mRNA.
Rattus norvegicus insulin-like growth factor binding protein 2 (Igfbp2), mRNA.
Rattus norvegicus serine dehydratase (Sds), mRNA.
Rattus norvegicus tumor necrosis factor (ligand) superfamily, member 13 (Tnfsf13), mRNA.
Rattus norvegicus heterogeneous nuclear ribonucleoprotein A/B (Hnrpab), mRNA.
Rattus norvegicus argininosuccinate lyase (Asl), mRNA.
Rattus norvegicus CD63 antigen (Cd63), mRNA.
PREDICTED: Rattus norvegicus similar to Ferritin light chain (Ferritin L subunit) (predicted) (RGD1560687_predicted), mRNA.
PREDICTED: Rattus norvegicus transient receptor potential cation channel, subfamily M, member 6 (predicted) (Trpm6_predicted), mRNA.
Rattus norvegicus heat shock 27 kDa protein 1 (Hspb1), mRNA.
Rattus norvegicus ferritin light chain 1 (Ftl1), mRNA.
PREDICTED: Rattus norvegicus microsomal glutathione S-transferase 2 (predicted) (Mgst2_predicted), mRNA.
PREDICTED: Rattus norvegicus zinc finger protein 593 (predicted) (Znf593_predicted), mRNA.
Rattus norvegicus phosphopantothenoylcysteine synthetase (Ppcs), mRNA.
Rattus norvegicus methylenetetrahydrofolate dehydrogenase (NADP + dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase (Mthfd1), mRNA.
A, B, C
Rattus norvegicus phosphomannomutase 1 (Pmm1), mRNA.
Rattus norvegicus aquaporin 11 (Aqp11), mRNA.
A, B, C
Rattus norvegicus cysteine and glycine-rich protein 2 (Csrp2), mRNA.
PREDICTED: Rattus norvegicus phospholipase A2, group XIIA (predicted) (Pla2g12a_predicted), mRNA.
Rattus norvegicus TRAF-interacting protein with forkhead-associated domain (Tifa), mRNA.
Rattus norvegicus hexosaminidase B (Hexb), mRNA.
Rattus norvegicus ribosomal protein S14 (Rps14), mRNA.
Rattus norvegicus immediate early response 3 (Ier3), mRNA.
Rattus norvegicus phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (Paics), mRNA.
PREDICTED: Rattus norvegicus thioredoxin-like 5 (predicted) (Txnl5_predicted), mRNA.
Rattus norvegicus phospholipase A1 member A (Pla1a), mRNA.
Rattus norvegicus cytochrome P450, family 8, subfamily b, polypeptide 1 (Cyp8b1), mRNA.
Rattus norvegicus cAMP responsive element binding protein 3 (Creb3), mRNA.
PREDICTED: Rattus norvegicus CD320 antigen (Cd320), mRNA.
PREDICTED: Rattus norvegicus nucleolar protein family A, member 2 (predicted) (Nola2_predicted), mRNA.
Rattus norvegicus sulfotransferase family, cytosolic, 1C, member 1 (Sult1c1), mRNA.
Rattus norvegicus solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2 (Slc11a2), mRNA.
Rattus norvegicus BTB (POZ) domain containing 9 (Btbd9), mRNA.
PREDICTED: Rattus norvegicus HIV-1 tat interactive protein 2, homolog (human) (predicted) (Htatip2_predicted), mRNA.
Rattus norvegicus cathepsin L1 (Ctsl1), mRNA.
Rattus norvegicus proteasome (prosome, macropain) subunit, beta type 3 (Psmb3), mRNA.
PREDICTED: Rattus norvegicus spermidine/spermine N1-acetyl transferase 2 (predicted) (Sat2_predicted), mRNA.
Rattus norvegicus general transcription factor IIB (Gtf2b), mRNA.
PREDICTED: Rattus norvegicus endothelial precursor protein B9 (predicted) (Eppb9_predicted), mRNA.
PREDICTED: Rattus norvegicus stromal cell derived factor 2 (predicted) (Sdf2_predicted), mRNA.
Rattus norvegicus WD repeat domain 45 (Wdr45), mRNA.
Rattus norvegicus proteasome (prosome, macropain) subunit, alpha type 5 (Psma5), mRNA.
DAVID analysis of the resulting gene list (see Additional file5: Table S5) reveals significant deregulation of carbohydrate metabolic pathways (enrichment factor 2.939, p-value = 0.00115), steroid response genes (enrichment factor 1.59, p-value = 0.0256) and mitochondrially-targeted genes (enrichment factor 1.53, p-value = 0.0298).
There was no significant enrichment for functional terms relating to immune function in this list since the significant downregulation of MHC class I was more pronounced in AD/Lep cohorts than in UN/Sal cohorts and hence these were excluded by the final filter (the same applies to the upregulation of complement gene C2). It is at present unclear why postnatal leptin treatment should have such a marked effect on immune parameters.
Precursor changes in chow-fed cohorts may be associated with disease predisposition
Of the four chow-fed cohorts, none directly shows metabolic syndrome, however the UN/Sal/Chow cohort is predisposed to metabolic syndrome and will suffer from it if fed a HF diet. We therefore looked specifically within the chow-fed cohorts to determine whether any of the 98 genes associated with metabolic syndrome (and rescued by leptin treatment) showed precursor expression changes that might be involved in susceptibility to or initiation of metabolic syndrome. In all, 41/98 of these genes also showed at least a 1.25 fold expression change in the UN/Sal/Chow cohort relative to the control AD/Sal/Chow cohort (highlighted in bold in Table 3). For these precursor changes, DAVID analysis did not show any enrichment for mitochondrially-targeted genes or for steroid response genes, however the annotation group relating to carbohydrate metabolism remained significant (enrichment factor 2.71, p-value = 0.002).
In this study, we present a whole-genome fully factorial examination of the transcriptional consequences of the interactions between maternal diet, leptin treatment, postweaning diet and metabolic syndrome in a rat model of developmental programming.
Our data confirm the prior observation of “leptin reversal”, in that of the genes regulated by postnatal leptin treatment, the vast majority show the opposite direction of leptin-induced change in pups born to undernourished mothers, when compared to those born to normally-nourished mothers. Strikingly, it is not simply that maternal undernutrition reverses the direction of the leptin response: rather it appears that both maternal undernutrition and postnatal leptin treatment independently switch the liver into an altered state. Paradoxically, the combination of both factors abolishes this effect and switches the liver back into a state more closely resembling the control (untreated) cohorts. This pattern is seen in both the transcriptional data and in key phenotypic parameters relating to metabolic status.
A revised model for developmental programming of obesity
Based on the transcriptional findings reported above and on our re-examination of existing growth data for both male and female offspring, we propose a revised model of developmental programming by maternal undernutrition and postnatal leptin treatment. In this new model, there are two competing programmes that can be established quasi-independently. The first programme is a thrifty hepatic metabolic programme induced by early life growth restriction, governing the efficiency with which fuel is used by the body. Importantly, in the AD/Lep cohorts the thrifty programming is invoked even in the presence of a supraphysiological leptin stimulus, suggesting that leptin itself is not the predominant signal involved in programming of hepatic metabolic efficiency. The second programme is a homeostatic set point programme governing body composition that is established in response to leptin stimulation during early neonatal life. The calibration of the set point (either lean or normal body composition) is determined by the body’s composition at the time of leptin stimulation, while the robustness with which the programme is “locked in” depends on the level of the stimulus. Given the known effects of leptin on appetite and locomotor activity, it is likely that this second programme is mediated at least in part by centrally controlled adjustment of calorie intake and expenditure, however we cannot rule out effects of leptin in other non-hepatic tissues.
Our model is based on the emerging view that during development leptin functions as an anti-starvation signal, as distinct from its adult role as a fatness and satiety signal. During early development, in normally nourished animals, leptin levels are high (known as the “leptin surge”) and largely independent of fat mass. As development proceeds, leptin levels drop to a lower level governed dually by overall fat mass and satiety[24–26]. Early life undernutrition delays or abolishes the leptin surge[27, 28], and nutritional recovery restores it–in the latter study, higher leptin levels were observed in “recovered” infants than in control infants, which we argue may represent a delayed developmental surge rather than a simple restoration of leptin secretion following fat gain.
We hypothesise that the function of neonatal leptin signalling is to train the homeostatic set point mechanisms to recognise and subsequently maintain an appropriate body fat composition, and that this pattern (surge followed by drop) represents the calibration mechanism for the feedback loop. The peak of the leptin surge triggers developments underpinning set point programming, while the leptin levels immediately subsequent to the surge set the baseline which will subsequently be defended by the newly-calibrated set point program. If the individual is normal weight at the time of the leptin surge, a normal calibration is established and will subsequently be maintained. Under starvation conditions the calibration process would normally be delayed by mechanisms including lower overall leptin secretion and also competition by excess soluble leptin receptor–however if exogenous leptin is administered, the combination of a leptin surge with an underweight body composition means that an unusually lean calibration is established and will subsequently be maintained. Conversely, if the individual is overweight at the time of the leptin surge, the calibration is set inappropriately high.
Interpreting the differences between male and female responses to early programming
Unified model for how the competing hepatic thriftiness and non-hepatic set point programmes interact to produce the observed phenotypes in males and females
Set point calibration2
Set point enforcement3
Strong (female default)
Baseline for chow and high fat diet regimes in females.
Strong (female default)
Normal set point calibration is enforced and overrides the thrifty metabolism. Weight remains comparable to AD/Sal females on both low and high fat diets despite thrifty liver biochemistry.
Impaired (due to insufficient leptin availability)
Set point enforcement is impaired and consequently unable to compensate for a thrifty metabolism when fed a HF diet. UN/Sal/HF females become morbidly obese and suffer metabolic syndrome.
Strong (restored to female default level)
A well-enforced “lean” set point in rescued females compensates for the thrifty metabolism, enforcing a lean body composition in UN/Lep/Chow and keeping weight gain down to normal levels in UN/Lep/HF.
Weak (male default)
Baseline for chow and high fat diet regimes in males.
Weak (male default)
As with UN/Sal animals (male and female), set point enforcement is weak and cannot compensate for the thrifty metabolism. The AD/Lep HF phenotype is more severe than UN/Sal/HF because the set point is higher.
Severely impaired (weak male default is lowered further)
Set point enforcement is severely impaired and thus UN/Sal males cannot maintain a steady body composition even on a normal chow diet. However, the set point is still lean and so the phenotype on HF diet is less severe than AD/Lep males.
Weak (restored to male default level)
Combined programme is similar to UN/Sal females. Rescued males maintain a steady body composition on a normal chow diet but show elevated weight gain on HF diet.
In females AD/Lep and UN/Sal both induce transcriptional changes related to fatty liver disease, but the combination of both in UN/Lep does not (Figure 1 and Results passim).
AD/Lep treatment is obesogenic in males but not in females (Figure 3A).
Neonatal leptin treatment protects against metabolic syndrome in UN females on a high fat postweaning diet, but is much less effective in males (Figure 3A).
UN/Sal/Chow females maintain a constant weight relative to AD/Sal/Chow controls from weaning onwards, whereas UN/Sal/Chow males shows a lifelong slow increase relative to AD/Sal/Chow controls (Figure 3B).
Significance of the “calibration” model for postnatal leptin signalling
Potentially this view of postnatal leptin signalling as a training/calibration mechanism is also applicable in wider contexts. For example, maternal overnutrition (as well as undernutrition) can also programme metabolic syndrome and obesity in offspring. Under our model, this is explained by the offspring being fatter at the time of the postnatal leptin training signal. The set point is consequently established at a higher level, leading these individuals to maintain and defend an inappropriately high body fat composition.
Similarly, this model could explain the differences in outcome (seen in both human and animal models) between neonates exhibiting rapid catch-up growth after starvation and those with a slower return to normal weight[30, 31]. Given that rapid weight recovery leads disproportionately to fat gain rather than lean tissue gain, it will skew the overall body composition to a higher fat percentage, which will subsequently be “locked in” once the leptin signalling reaches a high enough level to trigger the establishment of a body composition set point. Consistent with this, in a rat model, rapid catch up growth leads to leptin resistance in adulthood–the reduced sensitivity will consequently lead these animals to self-regulate to a higher plasma leptin level and a higher body fat content. Conversely, slower catch up growth does not have the same effect on the leptin feedback loop[32, 33].
Of key interest for future research will be whether this post-natal calibration of the body’s set point is a one-off event during a specific developmental window, or whether it can be re-triggered by a leptin surge (endogenous or exogenous) at later ages. One can envisage a “ratchet” mechanism for morbid obesity whereby weight gain beyond a given threshold triggers a re-calibration and establishment of a “new normal”, making subsequent weight loss harder. Conversely, if “surge” levels of leptin were administered following a period of weight loss, would it then be able to re-establish a healthier set point for the patient?
A thrifty liver is an immunosuppressed, inflamed liver
In functional terms, there are two core axes affected by the phenotypic switch in the liver, namely metabolism-and immune-related functions. The metabolism-related changes include upregulation of multiple genes concerned with mitochondrial function, glycolysis, gluconeogenesis and carbohydrate metabolism. This is associated with increased total body fat percentage, increased circulating fasting leptin levels, and increased insulin/C-peptide levels.
The second functional cluster of expression changes observed relates to immune function, with a concerted downregulation of MHC genes (predominantly class I genes, but also some class Ib and class II genes) and the Tap2 peptide transporter necessary for antigen presentation by class I molecules. Concurrent with this downregulation of adaptive immunity, there is a trend towards upregulation of the innate immune system, including both generic inflammatory mediators such as complement and also liver-specific markers such as alpha-fetoprotein. These changes are consistent with a model of non-alcoholic fatty liver disease as a chronic low-grade inflammatory process.
Concurrent with the pro-inflammatory changes observed, the effects on the adaptive immune system are interesting in relation to the immunological effects of perinatal programming, in particular the increased mortality from infectious disease in in utero-deprived children[13, 14]. Mechanistically, there is a plausible link between the metabolic phenotype and the immune system changes in that excess saturated fatty acids are known to exert an immunosuppressive effect via reduced antigen presentation by MHC class I molecules[35–37]. Potentially therefore this rat model may in future serve as a model for immune system development in malnourished children, as well as for metabolic disease.
It is intriguing to note that these transcriptional changes–both those reflecting increased inflammation and those reflecting decreased antigen presentation–are not only seen in the UN/Sal/HF cohort, but are consistent across all AD/Lep and UN/Sal cohorts irrespective of postweaning diet. This suggests that the immune changes are directly associated with the thrifty phenotype itself rather than with metabolic syndrome. An important avenue for future research will therefore be to examine immune parameters at early timepoints in programmed thrifty and non-thrifty animals to confirm whether the immune changes do indeed precede the development of clinical disease, and what impact this has for our understanding of the pathogenesis of obesity.
Do variations in hepatic thriftiness affect predisposition to metabolic syndrome in a nutritionally rich environment?
In the female experiment analysed here, despite the fact that both AD/Lep and UN/Sal provoke the same thriftiness phenotypic switch within the liver, it is only the UN/Sal rats that subsequently develop the full hallmarks of metabolic syndrome when fed a high fat diet. As we argue above, we believe this is most likely due to non-hepatic effects of leptin in establishing and maintaining a set point for body composition, however it is also plausible that there may be varying degrees of hepatic thriftiness depending on the nature and intensity of the stimulus provoking the programmed changes.
Therefore, we looked in detail at genes most strongly associated with pathological status (i.e. genes where UN/Sal/HF is an outlier from all other cohorts) and which were also affected by the maternal diet/leptin interaction. These are the genes most strongly associated with the induction of metabolic syndrome by maternal undernutrition and its subsequent rescue by leptin treatment. These too showed disturbances of carbohydrate metabolism and an increase in gluconeogenesis. Strikingly, around a quarter of this final set of genes showed precursor changes in the UN/Sal/Chow cohort, which potentially represent pre-pathogenic events that predispose to metabolic syndrome even among rats on a normal diet. Further investigation of this cohort could potentially indicate biomarkers for those at risk of metabolic syndrome, allowing targeted intervention and/or advice to be given before the onset of pathological change. Conversely, investigation of the non-hepatic effects of leptin in the AD/Lep/HF cohort (at least in females) may identify the factors that protect against metabolic syndrome even in the presence of a thrifty hepatic phenotype.
In this study, we have established that both prenatal undernutrition and postnatal leptin treatment lead to a thrifty liver programme, and explain this as a nonspecific response to growth restriction from any cause. We further show that this thrifty programming is associated with increased expression of inflammatory markers and also with a downregulation of antigen presentation genes that may thus lead to immunosuppression. We propose a new model for developmental programming of obesity involving competing thriftiness and set point programmes, which resolves several conflicts between the data from male and female rats, and may apply more generally to other models of obesogenic programming.
The experimental design utilised in this study has been described previously[17–19]. Briefly, virgin Wistar rats were time-mated and assigned to two nutritional groups: ad-libitum (AD) or undernourished (UN, 30% of ad-libitum). After birth, female AD and UN pups were randomized to receive either saline (Sal) or recombinant rat leptin (Lep, 2.5 μg/g · d) on neonatal days 3-13. After weaning (day 22), saline-or leptin-treated AD and UN offspring were weight matched and placed on either standard rat chow or a high fat (HF) chow (Research Diets No. 12451; 45% energy as fat) for the remainder of the study. At postnatal day 170 rats were fasted overnight and killed by halothane anaesthesia followed by decapitation. This results in a balanced factorial 2×2×2 design with 8 treatment groups, n = 8 animals per group. Liver samples were immediately removed (collected from the same lobe) and immediately snap frozen in liquid nitrogen and stored at−80°C for later analysis. Time of culling was rotated within and between groups to avoid circadian confounders, and was restricted to a narrow window between 9-11 am, at the start of the light phase of the standard 12/12 dark/light cycle.
RNA from whole liver tissue was prepared using Trizol reagent (Sigma) according to the manufacturer’s protocol. Briefly, for each individual, 25 mg of frozen liver tissue was homogenised in 1 ml Trizol, followed by chloroform extraction. The aqueous supernatant containing the RNA was retained and the RNA precipitated with isopropanol. RNA pellets were washed with 50% ethanol, air dried and resuspended in RNAse-free water (Milli-Q). RNA concentration and integrity was assayed with a Nanodrop 1000 spectrophotometer and an Agilent 2100 bioanalyser.
Microarray hybridisation and scanning
Array profiling was performed using the RatRef-12 oligonucleotide platform (Illumina). This comprises 21,910 probes covering the vast majority of the rat transcriptome. Probe labelling, hybridisation, washing and scanning were performed according to the manufacturer’s protocols using the Illumina Total Prep kit (Applied Biosystems). Briefly, first strand cDNA was synthesised in a total volume of 20 μl with the supplied reagents. The complete first strand product was used for second strand synthesis, followed by column purification. The purified product was then used for in vitro transcription using T7 polymerase. Biotin-16-dUTP was incorporated during this step, resulting in a biotinylated cRNA (complementary RNA) probe suitable for hybridisation. Probe integrity was verified using the Nanodrop 100 and Agilent 2100, as for the initial RNA samples. Labelled cRNA (1.5 μg) was hybridised to the array overnight at 55°C in a total volume of 30 μl of the manufacturer’s hybridisation buffer, followed by post-hybridisation stringency washing and scanning (BeadArray Reader, Illumina) using the manufacturer’s standard protocols.
Data extraction and QC
Array data was extracted and presence/absence calls performed using BeadStudio (Illumina), and subsequently normalised in Lumi using a variance-stabilising transformation. For each set of eight measurements for each gene/experimental condition combination, the single measurement furthest from the mean was excluded. This has the effect of robustly eliminating noisy outlier measurements while maintaining a fully balanced experimental design. After outlier exclusion, an initial filter was applied to remove non-expressed genes (defined as those called as absent in > =75% of the data set). This reduced the initial set of 21,910 probes to 8,497 liver-expressed genes for further analysis.
ANOVA analysis, gene classification and filtering
One-way ANOVA analysis and gene list filtering was performed using Kensington Discovery Edition (Inforsense). Benjamini/Hochberg correction was used to control for multiple testing, with a 5% false discovery rate (FDR). This yielded a list of 2221 probes showing significant regulation in at least one experimental cohort. Following Zhou et al. 2011, these genes were then classified via a three-way ANOVA looking at all three experimental factors (A = maternal diet, B = leptin treatment, C = postweaning diet) and all four potential interaction terms (AB/BC/AC/ABC interactions). Three-way ANOVA was performed using GNU Octave.
First, genes with a significant three-way interaction after FDR correction were assigned to group ABC. Next, genes with no significant three-way interaction, but where one or more of the two-way interaction terms was significant after FDR correction were assigned to groups AB/AC/BC as appropriate. Finally, genes with significant effects for each individual experimental factor and no confounding interaction term were assigned to groups A/B/C as appropriate. The categories are not necessarily exclusive: for example a gene showing additive non-interacting effects of both maternal diet and leptin treatment is included in both categories A and B. However, a gene with a significant interaction term, i.e. where both factors are significant but the effects do not combine linearly, would instead fall into category AB. This iterative method of classification ensures that a gene is only included in a given category if there are no confounding higher-order interaction terms.
DAVID analysis was performed using the web interface available at http://david.abcc.ncifcrf.gov/summary.jsp using default parameters for clustering stringency and the Illumina rat chipset (RatRef-12_V1_0_R4_11222119_A) as the reference list from which to calculate functional cluster enrichment.
Plasma leptin was measured by in-house radioimmunoassay as described previously (Vickers et al., Endocrinology 2001). Fasting plasma insulin, C-peptide and total ghrelin were measured using commercially available kits (rat insulin ELISA, Cat# 10-1124-10; Mercodia, Uppsala, Sweden; C-peptide RIA, cat# RCP-21 K; Linco Research Inc., St. Charles, MO; Ghrelin RIA, cat# GHRT-89HK, Linco Research). Fasting plasma glucose was measured using a YSI glucose analyzer (Model 2300; Yellow Springs Instrument Co., OH, USA). Plasma FFAs, glycerol and triglycerides were measured in-house using standard colorimetric assays.
Availability of supporting data
The expression array data set supporting the results of this article is available via LabOnline, doi:10.6070/H4X63JVVhttps://mynotebook.labarchives.com/share/Leptin/MjMuNHwyOTA2NC8xOC03L1RyZWVOb2RlLzMzMzM5NTUwNjh8NTkuNA==. Further supplementary data files are provided online as follows:
Cambridge (PJIE, BMS, TJM, CAS, NAA): This work was supported by the BBSRC and the Leverhulme Trust. Auckland (MHV, SG, PDG): This work was supported via the Health Research Council of New Zealand and Gravida: National Centre for Growth and Development. We thank Julien Bauer for assistance with microarray data processing and normalisation.
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