Campbell SA, Close TJ: Dehydrins: genes, proteins, and associations with phenotypic traits. New Phytologist. 1997, 137: 61-74. 10.1046/j.1469-8137.1997.00831.x.
Article
CAS
Google Scholar
Close TJ: Dehydrins: Emergence of a biochemical role of a family of plant dehydration proteins. Physiologia Plantarum. 1996, 97: 795-803. 10.1034/j.1399-3054.1996.970422.x.
Article
CAS
Google Scholar
Close TJ: Dehydrins: A commonality in the response of plants to dehydration and low temperature. Physiologia Plantarum. 1997, 100: 291-296. 10.1034/j.1399-3054.1997.1000210.x.
Article
CAS
Google Scholar
Dure LIII: Structural motifs in LEA proteins. Plant Responses to Cellular Dehydration during Environmental Stress. Current Topics in Plant Physiology. Edited by: Close TJ and Bray E. 1993, Rockville, MD, American Society of Plant Physiologists, 91-103.
Google Scholar
Rinne PLH, Kaikuranta PLM, van der Plas LHW, van der Schoot C: Dehydrins in cold-acclimated apices of birch (Betula pubescens Ehrh.): production, localization and potential role in rescuing enzyme function during dehydration. Planta. 1999, 209: 377-388. 10.1007/s004250050740.
Article
PubMed
CAS
Google Scholar
Allagulova CR, Gimalov FR, Shakirova FM, Vakhitov VA: The plant dehydrins: Structure and putative functions. Biochemistry-Moscow. 2003, 68: 945-951. 10.1023/A:1026077825584.
Article
PubMed
CAS
Google Scholar
Li R, Brawley SH, Close TJ: Proteins immunologically related to dehydrins in fucoid algae. Journal of Phycology. 1998, 34: 642-650. 10.1046/j.1529-8817.1998.340642.x.
Article
CAS
Google Scholar
Close TJ, Lammers PJ: An Osmotic-Stress Protein of Cyanobacteria Is Immunologically Related to Plant Dehydrins. Plant Physiology. 1993, 101: 773-779. 10.1104/pp.101.3.773.
Article
PubMed
CAS
PubMed Central
Google Scholar
Stephens RS, Kalman S, Lammel C, Fan J, Marathe R, Aravind L, Mitchell W, Olinger L, Tatusov RL, Zhao Q, Koonin EV, Davis RW: Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science. 1998, 282: 754-759. 10.1126/science.282.5389.754.
Article
PubMed
CAS
Google Scholar
Adams MD, Celniker SE, Holt RA, Evans CA, Gocayne JD, Amanatides PG, Scherer SE, Li PW, Hoskins RA, Galle RF, George RA, Lewis SE, Richards S, Ashburner M, Henderson SN, Sutton GG, Wortman JR, Yandell MD, Zhang Q, Chen LX, Brandon RC, Rogers YHC, Blazej RG, Champe M, Pfeiffer BD, Wan KH, Doyle C, Baxter EG, Helt G, Nelson CR, Miklos GLG, Abril JF, Agbayani A, An HJ, ndrews-Pfannkoch C, Baldwin D, Ballew RM, Basu A, Baxendale J, Bayraktaroglu L, Beasley EM, Beeson KY, Benos PV, Berman BP, Bhandari D, Bolshakov S, Borkova D, Botchan MR, Bouck J, Brokstein P, Brottier P, Burtis KC, Busam DA, Butler H, Cadieu E, Center A, Chandra I, Cherry JM, Cawley S, Dahlke C, Davenport LB, Davies A, de Pablos B, Delcher A, Deng ZM, Mays AD, Dew I, Dietz SM, Dodson K, Doup LE, Downes M, Dugan-Rocha S, Dunkov BC, Dunn P, Durbin KJ, Evangelista CC, Ferraz C, Ferriera S, Fleischmann W, Fosler C, Gabrielian AE, Garg NS, Gelbart WM, Glasser K, Glodek A, Gong FC, Gorrell JH, Gu ZP, Guan P, Harris M, Harris NL, Harvey D, Heiman TJ, Hernandez JR, Houck J, Hostin D, Houston DA, Howland TJ, Wei MH, Ibegwam C, Jalali M, Kalush F, Karpen GH, Ke ZX, Kennison JA, Ketchum KA, Kimmel BE, Kodira CD, Kraft C, Kravitz S, Kulp D, Lai ZW, Lasko P, Lei YD, Levitsky AA, Li JY, Li ZY, Liang Y, Lin XY, Liu XJ, Mattei B, McIntosh TC, Mcleod MP, McPherson D, Merkulov G, Milshina NV, Mobarry C, Morris J, Moshrefi A, Mount SM, Moy M, Murphy B, Murphy L, Muzny DM, Nelson DL, Nelson DR, Nelson KA, Nixon K, Nusskern DR, Pacleb JM, Palazzolo M, Pittman GS, Pan S, Pollard J, Puri V, Reese MG, Reinert K, Remington K, Saunders RDC, Scheeler F, Shen H, Shue BC, Siden-Kiamos I, Simpson M, Skupski MP, Smith T, Spier E, Spradling AC, Stapleton M, Strong R, Sun E, Svirskas R, Tector C, Turner R, Venter E, Wang AHH, Wang X, Wang ZY, Wassarman DA, Weinstock GM, Weissenbach J, Williams SM, Woodage T, Worley KC, Wu D, Yang S, Yao QA, Ye J, Yeh RF, Zaveri JS, Zhan M, Zhang GG, Zhao Q, Zheng LS, Zheng XQH, Zhong FN, Zhong WY, Zhou XJ, Zhu SP, Zhu XH, Smith HO, Gibbs RA, Myers EW, Rubin GM, Venter JC: The genome sequence of Drosophila melanogaster. Science. 2000, 287: 2185-2195. 10.1126/science.287.5461.2185.
Article
PubMed
Google Scholar
Bray E: Responses to abiotic stresses. Biochemistry & Molecular Biology of Plants. Edited by: Buchanan BB, Gruissem W and Jones RL. 2002, Rockville, MD, American Society of Plant Physiologists, 1158-1203.
Google Scholar
Wise MJ: LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles. Bmc Bioinformatics. 2003, 4: 52-10.1186/1471-2105-4-52.
Article
PubMed
PubMed Central
Google Scholar
Garay-Arroyo A, Colmenero-Flores JM, Garciarrubio A, Covarrubias AA: Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. Journal of Biological Chemistry. 2000, 275: 5668-5674. 10.1074/jbc.275.8.5668.
Article
PubMed
CAS
Google Scholar
Mtwisha L, Brandt W, McCready S, Lindsey GG: HSP 12 is a LEA-like protein in Saccharomyces cerevisiae. Plant Molecular Biology. 1998, 37: 513-521. 10.1023/A:1005904219201.
Article
PubMed
CAS
Google Scholar
Cuming AC: LEA proteins. Seed Proteins. Edited by: Shewry PR and Casey R. 2005, Dordrecht, Netherlands, Kluwer Academic, 753-780.
Google Scholar
Stacy RAP, Aalen RB: Identification of sequence homology between the internal hydrophilic repeated motifs of Group 1 late-embryogenesis-abundant proteins in plants and hydrophilic repeats of the general stress protein GsiB of Bacillus subtilis. Planta. 1998, 206: 476-478. 10.1007/s004250050424.
Article
PubMed
CAS
Google Scholar
Makarova KS, Aravind L, Wolf YI, Tatusov RL, Minton KW, Koonin EV, Daly MJ: Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics. Microbiology and Molecular Biology Reviews. 2001, 65: 44-79. 10.1128/MMBR.65.1.44-79.2001.
Article
PubMed
CAS
PubMed Central
Google Scholar
Browne J, Tunnacliffe A, Burnell A: Anhydrobiosis - Plant desiccation gene found in a nematode. Nature. 2002, 416: 38-38. 10.1038/416038a.
Article
PubMed
CAS
Google Scholar
Garay-Arroyo A, Covarrubias AA: Three genes whose expression is induced by stress in Saccharomyces cerevisiae. Yeast. 1999, 15: 879-892. 10.1002/(SICI)1097-0061(199907)15:10A<879::AID-YEA428>3.0.CO;2-Q.
Article
PubMed
CAS
Google Scholar
Springer ML, Yanofsky C: Expression of Con Genes Along the 3 Sporulation Pathways of Neurospora-Crassa. Genes & Development. 1992, 6: 1052-1057.
Article
CAS
Google Scholar
Gabella S, Abba' S, Duplessis S, Montanini B, Martin F, Bonfante P: Transcript profiling reveals novel marker genes involved in fruit body formation in Tuber borchii. Eukaryotic Cell. 2005, 5: 1599-1602. 10.1128/EC.4.9.1599-1602.2005.
Article
Google Scholar
Bertault G, Raymond M, Berthomieu A, Callot G, Fernandez D: Trifling variation in truffles. Nature. 1998, 394: 734-734. 10.1038/29428.
Article
CAS
Google Scholar
National Center for Biotechnology Information. 2006, [http://www.ncbi.nlm.nih.gov]
Wootton JC, Federhen S: Statistics of Local Complexity in Amino-Acid-Sequences and Sequence Databases. Computers & Chemistry. 1993, 17: 149-163. 10.1016/0097-8485(93)85006-X.
Article
CAS
Google Scholar
Notredame C, Higgins DG, Heringa J: T-Coffee: A novel method for fast and accurate multiple sequence alignment. Journal of Molecular Biology. 2000, 302: 205-217. 10.1006/jmbi.2000.4042.
Article
PubMed
CAS
Google Scholar
Bork P: Powers and pitfalls in sequence analysis: The 70% hurdle. Genome Research. 2000, 10: 398-400. 10.1101/gr.10.4.398.
Article
PubMed
CAS
Google Scholar
Galperin MY: Conserved 'hypothetical' proteins: new hints and new puzzles. Comparative and Functional Genomics. 2001, 2: 14-18. 10.1002/cfg.66.
Article
PubMed
CAS
PubMed Central
Google Scholar
Roberts RJ: Identifying protein function--a call for community action. PLoS Biol. 2004, 2: E42-10.1371/journal.pbio.0020042.
Article
PubMed
PubMed Central
Google Scholar
Galperin MY, Koonin EV: 'Conserved hypothetical' proteins: prioritization of targets for experimental study. Nucleic Acids Res. 2004, 32: 5452-5463. 10.1093/nar/gkh885.
Article
PubMed
CAS
PubMed Central
Google Scholar
Heckman DS, Geiser DM, Eidell BR, Stauffer RL, Kardos NL, Hedges SB: Molecular evidence for the early colonization of land by fungi and plants. Science. 2001, 293: 1129-1133. 10.1126/science.1061457.
Article
PubMed
CAS
Google Scholar
Fischer D: Rational structural genomics: affirmative action for ORFans and the growth in our structural knowledge. Protein Engineering. 1999, 12: 1029-1030. 10.1093/protein/12.12.1029.
Article
PubMed
CAS
Google Scholar
Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P: Molecular Biology of the Cell. Fourth Edition. 2002, London, UK, Garland Publishing, [http://www.ncbi.nlm.nih.gov/books/bv.fcgi?call=bv.View..ShowTOC&rid=mboc4.TOC&depth=2]
Google Scholar
Oliver MJ, Dowd SE, Zaragoza J, Mauget SA, Payton PR: The rehydration transcriptome of the desiccation-tolerant bryophyte Tortula ruralis: transcript classification and analysis. Bmc Genomics. 2004, 5: 89-10.1186/1471-2164-5-89.
Article
PubMed
PubMed Central
Google Scholar
Pegler DN, Spooner BM, Young TWK: British truffles. A revision of British Hypogeous fungi. 1993, Kew, UK, Royal Botanic Gradens
Google Scholar
Grimaldi B, de Raaf MA, Filetici P, Ottonello S, Ballario P: Agrobacterium-mediated gene transfer and enhanced green fluorescent protein visualization in the mycorrhizal ascomycete Tuber borchii: a first step towards truffle genetics. Current Genetics. 2005, 48: 69-74. 10.1007/s00294-005-0579-z.
Article
PubMed
CAS
Google Scholar
Soragni E, Bolchi A, Balestrini R, Gambaretto C, Percudani R, Bonfante P, Ottonello S: A nutrient-regulated, dual localization phospholipase A2 in the symbiotic fungus Tuber borchii. EMBO J. 2001, 20: 5079-5090. 10.1093/emboj/20.18.5079.
Article
PubMed
CAS
PubMed Central
Google Scholar
Percudani R, Montanini B, Ottonello S: The anti-HIV cyanovirin-N domain is evolutionarily conserved and occurs as a protein module in eukaryotes. Proteins: Structure, Function, and Bioinformatics. 2005, 60: 670-678. 10.1002/prot.20543.
Article
CAS
Google Scholar
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.
Article
PubMed
CAS
PubMed Central
Google Scholar
Soanes DM, Skinner W, Keon J, Hargreaves J, Talbot NJ: Genomics of phytopathogenic fungi and the development of bioinformatic resources. Molecular Plant-Microbe Interactions. 2002, 15: 421-427.
Article
PubMed
CAS
Google Scholar
The Broad Institute. 2006, [http://www.broad.mit.edu]
The Institute for Genomic Research. 2006, [http://www.tigr.org]
MySQL. 2006, [http://www.mysql.org]
Rost B, Liu JF: The PredictProtein server. Nucleic Acids Research. 2003, 31: 3300-3304. 10.1093/nar/gkg508.
Article
PubMed
CAS
PubMed Central
Google Scholar
GenDoc. 2006, [http://www.psc.edu/biomed/genedoc]
HMMER. 2006, [http://hmmer.wustl.edu/]
Swofford DL: PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. 2003, Sunderland, Massachusetts, Sinauer Associates
Google Scholar
Ronquist F, Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 2003, 19: 1572-1574. 10.1093/bioinformatics/btg180.
Article
PubMed
CAS
Google Scholar
Page RD: TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci. 1996, 12: 357-358.
PubMed
CAS
Google Scholar
Pepinfo. 2006, [http://cbi.labri.fr/outils/Pise/pepinfo.html]
The WoLF PSORTII web server. 2006, [http://wolfpsort.seq.cbrc.jp/]
Cokol M, Nair R, Rost B: Finding nuclear localization signals. Embo Reports. 2000, 1: 411-415. 10.1093/embo-reports/kvd092.
Article
PubMed
CAS
PubMed Central
Google Scholar
Viotti A, Abildsten D, Pogna N, Sala E, Pirrotta V: Multiplicity and diversity of cloned zein cDNA sequences and their chromosomal localization. EMBO Journal. 1982, 1: 53-58.
PubMed
CAS
PubMed Central
Google Scholar
Henrion B, Chevalier G, Martin F: Typing Truffle Species by Pcr Amplification of the Ribosomal Dna Spacers. Mycological Research. 1994, 98: 37-43.
Article
CAS
Google Scholar