Souza W: Novel Cell Biology of Trypanosoma cruzi. American Trypanosomiasis World Class Parasites: Volume 7. Edited by: Miles MATKM. 2003, Boston , Springer, 13-24.
Chapter
Google Scholar
Simpson L, Neckelmann N, de la Cruz VF, Simpson AM, Feagin JE, Jasmer DP, Stuart JE: Comparison of the maxicircle (mitochondrial) genomes of Leishmania tarentolae and Trypanosoma brucei at the level of nucleotide sequence. J Biol Chem. 1987, 262 (13): 6182-6196.
PubMed
CAS
Google Scholar
Feagin JE, Shaw JM, Simpson L, Stuart K: Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids. Proc Natl Acad Sci U S A. 1988, 85 (2): 539-543. 10.1073/pnas.85.2.539.
Article
PubMed
CAS
PubMed Central
Google Scholar
Shaw JM, Feagin JE, Stuart K, Simpson L: Editing of kinetoplastid mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons. Cell. 1988, 53 (3): 401-411. 10.1016/0092-8674(88)90160-2.
Article
PubMed
CAS
Google Scholar
Payne M, Rothwell V, Jasmer DP, Feagin JE, Stuart K: Identification of mitochondrial genes in Trypanosoma brucei and homology to cytochrome c oxidase II in two different reading frames. Mol Biochem Parasitol. 1985, 15 (2): 159-170. 10.1016/0166-6851(85)90117-3.
Article
PubMed
CAS
Google Scholar
Benne R, Van den Burg J, Brakenhoff JP, Sloof P, Van Boom JH, Tromp MC: Major transcript of the frameshifted coxII gene from trypanosome mitochondria contains four nucleotides that are not encoded in the DNA. Cell. 1986, 46 (6): 819-826. 10.1016/0092-8674(86)90063-2.
Article
PubMed
CAS
Google Scholar
Shaw JM, Campbell D, Simpson L: Internal frameshifts within the mitochondrial genes for cytochrome oxidase subunit II and maxicircle unidentified reading frame 3 of Leishmania tarentolae are corrected by RNA editing: evidence for translation of the edited cytochrome oxidase subunit II mRNA. Proc Natl Acad Sci U S A. 1989, 86 (16): 6220-6224. 10.1073/pnas.86.16.6220.
Article
PubMed
CAS
PubMed Central
Google Scholar
van der Spek H, van den Burg J, Croiset A, van den Broek M, Sloof P, Benne R: Transcripts from the frameshifted MURF3 gene from Crithidia fasciculata are edited by U insertion at multiple sites. EMBO J. 1988, 7 (8): 2509-2514.
PubMed
CAS
PubMed Central
Google Scholar
Feagin JE, Abraham JM, Stuart K: Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei. Cell. 1988, 53 (3): 413-422. 10.1016/0092-8674(88)90161-4.
Article
PubMed
CAS
Google Scholar
Simpson L, Sbicego S, Aphasizhev R: Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business. RNA. 2003, 9 (3): 265-276. 10.1261/rna.2178403.
Article
PubMed
CAS
PubMed Central
Google Scholar
Stuart K, Panigrahi AK: RNA editing: complexity and complications. Mol Microbiol. 2002, 45 (3): 591-596. 10.1046/j.1365-2958.2002.03028.x.
Article
PubMed
CAS
Google Scholar
Uridine-Insertion/Deletion Edited Sequence Database. [http://dna.kdna.ucla.edu/trypanosome/database.html]
Avila HA, Simpson L: Organization and complexity of minicircle-encoded guide RNAs in Trypanosoma cruzi. RNA. 1995, 1 (9): 939-947.
PubMed
CAS
PubMed Central
Google Scholar
Avila H, Goncalves AM, Nehme NS, Morel CM, Simpson L: Schizodeme analysis of Trypanosoma cruzi stocks from South and Central America by analysis of PCR-amplified minicircle variable region sequences. Mol Biochem Parasitol. 1990, 42 (2): 175-187. 10.1016/0166-6851(90)90160-N.
Article
PubMed
CAS
Google Scholar
Macina RA, Sanchez DO, Affranchino JL, Engel JC, Frasch AC: Polymorphisms within minicircle sequence classes in the kinetoplast DNA of Trypanosoma cruzi clones. Mol Biochem Parasitol. 1985, 16 (1): 61-74. 10.1016/0166-6851(85)90049-0.
Article
PubMed
CAS
Google Scholar
Macina RA, Sanchez DO, Gluschankof DA, Burrone OR, Frasch AC: Sequence diversity in the kinetoplast DNA minicircles of Trypanosoma cruzi. Mol Biochem Parasitol. 1986, 21 (1): 25-32. 10.1016/0166-6851(86)90075-7.
Article
PubMed
CAS
Google Scholar
Sanchez DO, Madrid R, Engel JC, Frasch AC: Rapid identification of Trypanosoma cruzi isolates by 'dot-spot' hybridization. FEBS Lett. 1984, 168 (1): 139-142. 10.1016/0014-5793(84)80223-9.
Article
PubMed
CAS
Google Scholar
Junqueira AC, Degrave W, Brandao A: Minicircle organization and diversity in Trypanosoma cruzi populations. Trends Parasitol. 2005, 21 (6): 270-272. 10.1016/j.pt.2005.04.001.
Article
PubMed
Google Scholar
Morel CM, Lazdins J: Chagas disease. Nat Rev Microbiol. 2003, 1 (1): 14-15. 10.1038/nrmicro735.
Article
PubMed
Google Scholar
Campbell DA, Westenberger SJ, Sturm NR: The determinants of Chagas disease: connecting parasite and host genetics. Curr Mol Med. 2004, 4 (6): 549-562. 10.2174/1566524043360249.
Article
PubMed
CAS
Google Scholar
Anonymous: Recommendations from a satellite meeting. Mem Inst Oswaldo Cruz. 1999, 94: 429-432.
Article
Google Scholar
Brisse S, Barnabé C, Tibayrenc M: Identification of six Trypanosoma cruzi phylogenetic lineages by random amplified polymorphic DNA and multilocus enzyme electrophoresis. Int J Parasitol. 2000, 30 (1): 35-44. 10.1016/S0020-7519(99)00168-X.
Article
PubMed
CAS
Google Scholar
Brisse S, Dujardin JC, Tibayrenc M: Identification of six Trypanosoma cruzi lineages by sequence-characterised amplified region markers. Mol Biochem Parasitol. 2000, 111 (1): 95-105. 10.1016/S0166-6851(00)00302-9.
Article
PubMed
CAS
Google Scholar
Brisse S, Verhoef J, Tibayrenc M: Characterisation of large and small subunit rRNA and mini-exon genes further supports the distinction of six Trypanosoma cruzi lineages. Int J Parasitol. 2001, 31 (11): 1218-1226. 10.1016/S0020-7519(01)00238-7.
Article
PubMed
CAS
Google Scholar
Westenberger SJ, Barnabé C, Campbell DA, Sturm NR: Two hybridization events define the population structure of Trypanosoma cruzi. Genetics. 2005, 171 (2): 527-543. 10.1534/genetics.104.038745.
Article
PubMed
CAS
PubMed Central
Google Scholar
Engman DM, Leon JS: Pathogenesis of Chagas heart disease: role of autoimmunity. Acta Trop. 2002, 81 (2): 123-132. 10.1016/S0001-706X(01)00202-9.
Article
PubMed
Google Scholar
Leon JS, Engman DM: Autoimmunity in Chagas heart disease. Int J Parasitol. 2001, 31 (5-6): 555-561.
Article
PubMed
CAS
Google Scholar
Tarleton RL, Zhang L: Chagas disease etiology: autoimmunity or parasite persistence?. Parasitol Today. 1999, 15 (3): 94-99. 10.1016/S0169-4758(99)01398-8.
Article
PubMed
CAS
Google Scholar
Tarleton RL: Parasite persistence in the aetiology of Chagas disease. Int J Parasitol. 2001, 31 (5-6): 550-554.
Article
PubMed
CAS
Google Scholar
Tarleton RL: Chagas disease: a role for autoimmunity?. Trends Parasitol. 2003, 19 (10): 447-451. 10.1016/j.pt.2003.08.008.
Article
PubMed
CAS
Google Scholar
Leon JS, Engman DM: The significance of autoimmunity in the pathogenesis of Chagas heart disease. Front Biosci. 2003, 8: e315-22.
Article
PubMed
CAS
Google Scholar
Iwai LK, Juliano MA, Juliano L, Kalil J, Cunha-Neto E: T-cell molecular mimicry in Chagas disease: identification and partial structural analysis of multiple cross-reactive epitopes between Trypanosoma cruzi B13 and cardiac myosin heavy chain. J Autoimmun. 2005, 24 (2): 111-117. 10.1016/j.jaut.2005.01.006.
Article
PubMed
CAS
Google Scholar
Simoes-Barbosa A, Barros AM, Nitz N, Arganaraz ER, Teixeira AR: Integration of Trypanosoma cruzi kDNA minicircle sequence in the host genome may be associated with autoimmune serum factors in Chagas disease patients. Mem Inst Oswaldo Cruz. 1999, 94 (Suppl 1): 249-252.
Article
PubMed
CAS
Google Scholar
Teixeira AR, Arganaraz ER, Freitas LHJ, Lacava ZG, Santana JM, Luna H: Possible integration of Trypanosoma cruzi kDNA minicircles into the host cell genome by infection. Mutat Res. 1994, 305 (2): 197-209.
Article
PubMed
CAS
Google Scholar
Affranchino JL, Sanchez DO, Engel JC, Frasch AC, Stoppani AO: Trypanosoma cruzi: structure and transcription of kinetoplast DNA maxicircles of cloned stocks. J Protozool. 1986, 33 (4): 503-507.
Article
PubMed
CAS
Google Scholar
Leon W, Frasch AC, Hoeijmakers JH, Fase-Fowler F, Borst P, Brunel F, Davison J: Maxi-circles and mini-circles in kinetoplast DNA from Trypanosoma cruzi. Biochim Biophys Acta. 1980, 607 (2): 221-231.
Article
PubMed
CAS
Google Scholar
Ochs DE, Otsu K, Teixeira SM, Moser DR, Kirchhoff LV: Maxicircle genomic organization and editing of an ATPase subunit 6 RNA in Trypanosoma cruzi. Mol Biochem Parasitol. 1996, 76 (1-2): 267-278. 10.1016/0166-6851(95)02565-0.
Article
PubMed
CAS
Google Scholar
Brisse S, Henriksson J, Barnabé C, Douzery EJ, Berkvens D, Serrano M, De Carvalho MR, Buck GA, Dujardin JC, Tibayrenc M: Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype. Infect Genet Evol. 2003, 2 (3): 173-183. 10.1016/S1567-1348(02)00097-7.
Article
PubMed
CAS
Google Scholar
Lake JA, de la Cruz VF, Ferreira PC, Morel C, Simpson L: Evolution of parasitism: kinetoplastid protozoan history reconstructed from mitochondrial rRNA gene sequences. Proc Natl Acad Sci U S A. 1988, 85 (13): 4779-4783. 10.1073/pnas.85.13.4779.
Article
PubMed
CAS
PubMed Central
Google Scholar
Machado CA, Ayala FJ: Nucleotide sequences provide evidence of genetic exchange among distantly related lineages of Trypanosoma cruzi. Proc Natl Acad Sci U S A. 2001, 98 (13): 7396-7401. 10.1073/pnas.121187198.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gaunt MW, Yeo M, Frame IA, Stothard JR, Carrasco HJ, Taylor MC, Mena SS, Veazey P, Miles GA, Acosta N, de Arias AR, Miles MA: Mechanism of genetic exchange in American trypanosomes. Nature. 2003, 421 (6926): 936-939. 10.1038/nature01438.
Article
PubMed
CAS
Google Scholar
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran AN, Ghedin E, Worthey EA, Delcher AL, Blandin G, Westenberger SJ, Caler E, Cerqueira GC, Branche C, Haas B, Anupama A, Arner E, Aslund L, Attipoe P, Bontempi E, Bringaud F, Burton P, Cadag E, Campbell DA, Carrington M, Crabtree J, Darban H, da Silveira JF, de Jong P, Edwards K, Englund PT, Fazelina G, Feldblyum T, Ferella M, Frasch AC, Gull K, Horn D, Hou L, Huang Y, Kindlund E, Klingbeil M, Kluge S, Koo H, Lacerda D, Levin MJ, Lorenzi H, Louie T, Machado CR, McCulloch R, McKenna A, Mizuno Y, Mottram JC, Nelson S, Ochaya S, Osoegawa K, Pai G, Parsons M, Pentony M, Pettersson U, Pop M, Ramirez JL, Rinta J, Robertson L, Salzberg SL, Sanchez DO, Seyler A, Sharma R, Shetty J, Simpson AJ, Sisk E, Tammi MT, Tarleton R, Teixeira S, Van Aken S, Vogt C, Ward PN, Wickstead B, Wortman J, White O, Fraser CM, Stuart KD, Andersson B: The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. Science. 2005, 309 (5733): 409-415. 10.1126/science.1112631.
Article
PubMed
CAS
Google Scholar
Thomas S, Westenberger SJ, Campbell DA, Sturm NR: Intragenomic spliced leader RNA array analysis of kinetoplastids reveals unexpected transcribed region diversity in Trypanosoma cruzi. Gene. 2005, 352: 100-108. 10.1016/j.gene.2005.04.002.
Article
PubMed
CAS
Google Scholar
Thiemann OH, Maslov DA, Simpson L: Disruption of RNA editing in Leishmania tarentolae by the loss of minicircle-encoded guide RNA genes. EMBO J. 1994, 13 (23): 5689-5700.
PubMed
CAS
PubMed Central
Google Scholar
Shioiri C, Takahata N: Skew of mononucleotide frequencies, relative abundance of dinucleotides, and DNA strand asymmetry. J Mol Evol. 2001, 53 (4-5): 364-376. 10.1007/s002390010226.
Article
PubMed
CAS
Google Scholar
Simpson L, Maslov DA: Evolution of the U-insertion/deletion RNA editing in mitochondria of kinetoplastid protozoa. Ann N Y Acad Sci. 1999, 870: 190-205. 10.1111/j.1749-6632.1999.tb08879.x.
Article
PubMed
CAS
Google Scholar
Feagin JE, Jasmer DP, Stuart K: Apocytochrome b and other mitochondrial DNA sequences are differentially expressed during the life cycle of Trypanosoma brucei. Nucleic Acids Res. 1985, 13 (12): 4577-4596.
Article
PubMed
CAS
PubMed Central
Google Scholar
Maslov DA, Avila HA, Lake JA, Simpson L: Evolution of RNA editing in kinetoplastid protozoa. Nature. 1994, 368 (6469): 345-348. 10.1038/368345a0.
Article
PubMed
CAS
Google Scholar
Landweber LF, Gilbert W: RNA editing as a source of genetic variation. Nature. 1993, 363 (6425): 179-182. 10.1038/363179a0.
Article
PubMed
CAS
Google Scholar
Myler PJ, Glick D, Feagin JE, Morales TH, Stuart KD: Structural organization of the maxicircle variable region of Trypanosoma brucei: identification of potential replication origins and topoisomerase II binding sites. Nucleic Acids Res. 1993, 21 (3): 687-694.
Article
PubMed
CAS
PubMed Central
Google Scholar
Swiss EMBnet node server. [http://www.ch.EMBnet.org]
Francino MP, Ochman H: Strand asymmetries in DNA evolution. Trends Genet. 1997, 13 (6): 240-245. 10.1016/S0168-9525(97)01118-9.
Article
PubMed
CAS
Google Scholar
Read LK, Myler PJ, Stuart K: Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei. J Biol Chem. 1992, 267 (2): 1123-1128.
PubMed
CAS
Google Scholar
Marini JC, Levene SD, Crothers DM, Englund PT: A bent helix in kinetoplast DNA. Cold Spring Harb Symp Quant Biol. 1983, 47 Pt 1: 279-283.
Article
PubMed
CAS
Google Scholar
Wu HM, Crothers DM: The locus of sequence-directed and protein-induced DNA bending. Nature. 1984, 308 (5959): 509-513. 10.1038/308509a0.
Article
PubMed
CAS
Google Scholar
Ntambi JM, Marini JC, Bangs JD, Hajduk SL, Jimenez HE, Kitchin PA, Klein VA, Ryan KA, Englund PT: Presence of a bent helix in fragments of kinetoplast DNA minicircles from several trypanosomatid species. Mol Biochem Parasitol. 1984, 12 (3): 273-286. 10.1016/0166-6851(84)90084-7.
Article
PubMed
CAS
Google Scholar
Arts GJ, Benne R: Mechanism and evolution of RNA editing in kinetoplastida. Biochim Biophys Acta. 1996, 1307 (1): 39-54.
Article
PubMed
Google Scholar
Ryan KA, Shapiro TA, Rauch CA, Englund PT: Replication of kinetoplast DNA in trypanosomes. Annu Rev Microbiol. 1988, 42: 339-358. 10.1146/annurev.mi.42.100188.002011.
Article
PubMed
CAS
Google Scholar
Shapiro TA: Kinetoplast DNA maxicircles: networks within networks. Proc Natl Acad Sci U S A. 1993, 90 (16): 7809-7813. 10.1073/pnas.90.16.7809.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gibson W, Crow M, Kearns J: Kinetoplast DNA minicircles are inherited from both parents in genetic crosses of Trypanosoma brucei. Parasitol Res. 1997, 83 (5): 483-488. 10.1007/s004360050284.
Article
PubMed
CAS
Google Scholar
Savill NJ, Higgs PG: A theoretical study of random segregation of minicircles in trypanosomatids. Proc Biol Sci. 1999, 266 (1419): 611-620. 10.1098/rspb.1999.0680.
Article
PubMed
CAS
PubMed Central
Google Scholar
Hughes AL, Piontkivska H: Phylogeny of Trypanosomatidae and Bodonidae (Kinetoplastida) Based on 18S rRNA: Evidence for Paraphyly of Trypanosoma and Six Other Genera. Mol Biol Evol. 2003, 20 (4): 644-652. 10.1093/molbev/msg062.
Article
PubMed
CAS
Google Scholar
Cavalier-Smith T: Cell and genome coevolution: facultative anaerobiosis, glycosomes and kinetoplastan RNA editing. Trends Genet. 1997, 13 (1): 6-9. 10.1016/S0168-9525(96)30116-9.
Article
PubMed
CAS
Google Scholar
Savill NJ, Higgs PG: Redundant and non-functional guide RNA genes in Trypanosoma brucei are a consequence of multiple genes per minicircle. Gene. 2000, 256 (1-2): 245-252. 10.1016/S0378-1119(00)00345-0.
Article
PubMed
CAS
Google Scholar
Myers EW, Sutton GG, Delcher AL, Dew IM, Fasulo DP, Flanigan MJ, Kravitz SA, Mobarry CM, Reinert KH, Remington KA, Anson EL, Bolanos RA, Chou HH, Jordan CM, Halpern AL, Lonardi S, Beasley EM, Brandon RC, Chen L, Dunn PJ, Lai Z, Liang Y, Nusskern DR, Zhan M, Zhang Q, Zheng X, Rubin GM, Adams MD, Venter JC: A whole-genome assembly of Drosophila. Science. 2000, 287 (5461): 2196-2204. 10.1126/science.287.5461.2196.
Article
PubMed
CAS
Google Scholar
Laboratory of Phil Green website.
Pop M, Kosack DS, Salzberg SL: Hierarchical scaffolding with Bambus. Genome Res. 2004, 14 (1): 149-159. 10.1101/gr.1536204.
Article
PubMed
CAS
PubMed Central
Google Scholar
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B: Artemis: sequence visualization and annotation. Bioinformatics. 2000, 16 (10): 944-945. 10.1093/bioinformatics/16.10.944.
Article
PubMed
CAS
Google Scholar
Hall TA: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 1999, 41: 95-98.
CAS
Google Scholar
Rice P, Longden I, Bleasby A: EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000, 16 (6): 276-277. 10.1016/S0168-9525(00)02024-2.
Article
PubMed
CAS
Google Scholar
Sonnhammer EL, Durbin R: A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene. 1995, 167 (1-2): GC1-10. 10.1016/0378-1119(95)00714-8.
Article
PubMed
CAS
Google Scholar
THE MEME / MAST SYSTEM Motif Discovery and Search Version 3.5.2. [http://meme.sdsc.edu/meme/intro.html]
Crooks GE, Hon G, Chandonia JM, Brenner SE: WebLogo: a sequence logo generator. Genome Res. 2004, 14 (6): 1188-1190. 10.1101/gr.849004.
Article
PubMed
CAS
PubMed Central
Google Scholar
The Institute for Genomic Research website. [http://www.tigr.org]