Driever W, Stemple D, Schier A, Solnica-Krezel L: Zebrafish: genetic tools for studying vertebrate development. Trends Genet. 1994, 10: 152-159. 10.1016/0168-9525(94)90091-4.
Article
CAS
PubMed
Google Scholar
Lamatsch DK, Steinlein C, Schmid M, Schartl M: Noninvasive determination of genome size and ploidy level in fishes by flow cytometry: detection of triploid Poecilia formosa. Cytometry. 2000, 39: 91-95. 10.1002/(SICI)1097-0320(20000201)39:2<91::AID-CYTO1>3.0.CO;2-4.
Article
CAS
PubMed
Google Scholar
Endo A, Ingalls TH: Chromosomes of the zebrafish. A model for cytogenetic, embryologic, and ecologic study. J Hered. 1968, 59: 382-384.
CAS
PubMed
Google Scholar
Postlethwait JH, Talbot WS: Zebrafish genomics: from mutants to genes. Trends Genet. 1997, 13: 183-190. 10.1016/S0168-9525(97)01129-3.
Article
CAS
PubMed
Google Scholar
Postlethwait JH, Yan Y, Gates MA, Horne S, Amores A, Brownlie A, Donovan A, Egan ES, Force A, Gong Z, Goutel C, Fritz A, Kelsh R, Knapik E, Liao E, Paw B, Ranson D, Singer A, Thomson M, Abduljabbar TS, Yelik P, Beier D, Joly JS, Larhammar D, Rosa F, Westerfield M, Zon LI, Johnson SL, Talbot WS: Vertebrate genome evolution and the zebrafish gene map. Nat Genet. 1998, 18: 345-349. 10.1038/ng0498-345.
Article
CAS
PubMed
Google Scholar
Amores A, Force A, Yan Y, Joly L, Amemiya C, Fritz A, Ho RK, Langeland J, Prince V, Wang Y, Westerfield M, Ekker M, Postlethwait JH: Zebrafish hox clusters and vertebrate genome evolution. Science. 1998, 282: 1711-1714. 10.1126/science.282.5394.1711.
Article
CAS
PubMed
Google Scholar
Gates MA, Kim L, Egan ES, Cardozo T, Sirotkin HI, Dougan ST, Lashkari D, Abagyan R, Schier AF, Talbot WS: A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Res. 1999, 9: 334-347.
CAS
PubMed
Google Scholar
Barbazuk WB, Korf I, Kadavi C, Heyen J, Tate S, Wun E, Bedell JA, McPherson JD, Johnson SL: The syntenic relationship of the zebrafish and humans genomes. Genome Res. 2000, 10: 1351-1358. 10.1101/gr.144700.
Article
CAS
PubMed Central
PubMed
Google Scholar
Woods IG, Kelly PD, Chu F, Ngo-Hazellet P, Yan Y, Huang H, Postlethwait JH, Talbot WS: A comparative map of the zebrafish genome. Genome Res. 2000, 10: 1903-1914. 10.1101/gr.10.12.1903.
Article
CAS
PubMed Central
PubMed
Google Scholar
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS: The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res. 2005, 15: 1307-1314. 10.1101/gr.4134305.
Article
CAS
PubMed Central
PubMed
Google Scholar
Trans-NIH zebrafish genome initiative. [http://www.nih.gov/science/models/zebrafish]
Postlethwait J, Johnson SL, Midson CN, Talbot WS, Gates M, Ballinger EW, Africa D, Andrews R, Carl T, Eisen JS, Horne S, Kimmel CB, Hutchinson M, Johnson M, Rodriguez A: A genetic linkage map for the zebrafish. Science. 1994, 264: 699-703. 10.1126/science.8171321.
Article
CAS
PubMed
Google Scholar
Johnson SL, Gates MA, Johnson M, Talbot WS, Horne S, Baik K, Rude S, Wong JR, Postlethwait JH: Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics. 1996, 142: 1277-1288.
CAS
PubMed Central
PubMed
Google Scholar
MGH/CVRC zebrafish server. [http://zebrafish.mgh.harvard.edu/]
The Children's Hospital zebrafish genome project initiative. [http://zfrhmaps.tch.harvard.edu/zonrhmapper]
Tuebingen map of the zebrafish genome. [http://wwwmap.tuebingen.mpg.de]
Washington University (St. Louis, Missouri) – Zebrafish Genome Resources. [http://zfish.wustl.edu]
Knapik EW, Goodman A, Atkinson OS, Roberts CT, Shiozawa M, Sim CU, Weksler-Zangen S, Trolliet MR, Futrell C, Innes BA, Koike G, McLaughlin MG, Pierre L, Simon JS, Vilallonga E, Roy M, Chiang P, Fishman MC, Driever W, Jacob HJ: A reference cross DNA panel for zebrafish (Danio rerio) anchored with simple sequence length polymorphisms. Development. 1996, 123: 451-460.
CAS
PubMed
Google Scholar
Knapik EW, Goodman A, Ekker M, Chevrette M, Delgado J, Neuhauss S, Shimoda N, Driever W, Fishman MC, Jacob HJ: A microsatellite genetic linkage map for zebrafish (Danio rerio). Nat Genet. 1998, 18: 338-343. 10.1038/ng0498-338.
Article
CAS
PubMed
Google Scholar
Geisler R, Rauch GJ, Baier H, van Bebber F, Brobeta L, Dekens MP, Finger K, Fricke C, Gates MA, Geiger H, Geiger-Rudolph S, Gilmour D, Glaser S, Gnugge L, Habeck H, Hingst K, Holley S, Keenan J, Kirn A, Knaut H, Lashkari D, Maderspacher F, Martyn U, Neuhauss S, Neumann C, Nicolson T, Pelegri F, Ray R, Rick JM, Roehl H, Roeser T, Schauerte HE, Schier AF, Schonberger U, Schonthaler H, Schulte-Merker S, Seydler C, Talbot WS, Weiler C, Nusslein-Volhard C, Haffter P: A radiation hybrid map of the zebrafish genome. Nat Genet. 1999, 23: 86-89. 10.1038/12692.
Article
CAS
PubMed
Google Scholar
Hukriede NA, Joly L, Tsang M, Miles J, Tellis P, Epstein JA, Barbazuk WB, Li FN, Paw B, Postlethwait JH, Hudson TJ, Zon LI, McPherson JD, Chevrette M, Dawid IB, Johson SL, Ekker M: Radiation hybrid mapping of the zebrafish genome. Proc Natl Acad Sci USA. 1999, 96: 9745-9750. 10.1073/pnas.96.17.9745.
Article
CAS
PubMed Central
PubMed
Google Scholar
Kwok C, Critcher R, Schmitt K: Construction and characterization of zebrafish whole genome radiation hybrids. Method Cell Biol. 1999, 60: 287-302.
Article
CAS
Google Scholar
Shimoda N, Knapik EW, Ziniti J, Sim C, Yamada E, Kaplan S, Jackson D, Sauvage F, Jacob H, Fishman MC: Zebrafish genetic map with 2000 microsatellite markers. Genomics. 1999, 58: 219-232. 10.1006/geno.1999.5824.
Article
CAS
PubMed
Google Scholar
Kelly PD, Chu F, Woods IG, Ngo-Hazelett P, Cardozo T, Huang H, Kimm F, Liao L, Yan YL, Zhou Y, Johnson SL, Abagyan R, Schier AF, Postlethwait , Talbot WS: Genetic linkage mapping of zebrafish genes and ESTs. Genome Res. 2000, 10: 558-567. 10.1101/gr.10.4.558.
Article
CAS
PubMed Central
PubMed
Google Scholar
Hukriede NA, Fisher D, Epstein J, Joly L, Tellis P, Zhou Y, Barbazuk B, Cox K, Fenton-Noriega L, Hersey C, Miles J, Sheng X, Song A, Waterman R, Johnson SL, Dawid JB, Chevrette M, Zon LI, McPherson J, Ekker M: The LN54 radiation hybrid map of zebrafish expressed sequences. Genome Res. 2001, 11: 2127-2132. 10.1101/gr.210601.
Article
CAS
PubMed Central
PubMed
Google Scholar
Wellcome Trust Sanger Institute, Danio rerio sequencing project. [http://www.sanger.ac.uk/Projects/D_rerio/]
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM: Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437: 376-380.
CAS
PubMed Central
PubMed
Google Scholar
Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, Friedman R, Halpern A, Khouri H, Kravitz SA, Lauro FM, Li K, Rogers YH, Strausberg R, Sutton G, Tallon L, Thomas T, Venter E, Frazier M, Venter JC: A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes. Proc Natl Acad Sci USA. 2006, 103: 11240-11245. 10.1073/pnas.0604351103.
Article
CAS
PubMed Central
PubMed
Google Scholar
Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, Thoreen C, Snijders A, Lemyre E, Bailey JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman C, Hans CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M, Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ, Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E, Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler G, de Jong PJ, Trask BJ: Integration of cytogenetic landmarks into the draft sequence of the human genome. Nature. 2001, 409: 953-958. 10.1038/35057192.
Article
CAS
PubMed
Google Scholar
Lee C, Smith A: Molecular cytogenetic methodologies and bacterial artificial chromosome (BAC) probe panel resource for genomic analyses in zebrafish. Method Cell Biol. 2004, 77: 241-254.
Article
CAS
Google Scholar
University of California – Santa Cruz bioinformatics site. [http://genome.ucsc.edu]
Ensembl zebrafish genome browser. [http://www.ensembl.org/Danio_rerio/index.html]
Wellcome Trust Sanger Institute Vega zebrafish genome annotation tool. [http://vega.sanger.ac.uk/Danio_rerio/index.html]
Zebrafish Genome Fingerprinting Project Clone database, WebFPC. [http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/WebFPCreport.cgi]
Postlethwait J, Amores A, Force A, Yan Y: The zebrafish genome. Method Cell Biol. 1999, 60: 149-163.
Article
CAS
Google Scholar
Sola L, Gornung E: Classical and molecular cytogenetics of the zebrafish, Danio rerio (Cyprinidae, Cypriniformes): an overview. Genetica. 2001, 111: 397-414. 10.1023/A:1013776323077.
Article
CAS
PubMed
Google Scholar
Phillips RB, Amores A, Morasch MR, Wilson C, Postlethwait JH: Assignment of zebrafish genetic linkage groups to chromosomes. Cytogenet Genome Res. 2006, 114: 155-162. 10.1159/000093332.
Article
CAS
PubMed
Google Scholar
Noor MAF, Grams KL, Bertucci LA, Reiland J: Chromosomal inversions and the reproductive isolation of species. Proc Natl Acad Sci USA. 2001, 98: 12084-12088. 10.1073/pnas.221274498.
Article
CAS
PubMed Central
PubMed
Google Scholar
Navarro A, Barton NH: Accumulating postzygotic isolation genes in parapatry: a new twist on chromosomal speciation. Evolution. 2003, 57: 447-459.
Article
PubMed
Google Scholar
Stefansson H, Helgason A, Thorleifsson G, Steinhorsdottir V, Masson G, Barnard J, Baker A, Jonasdottir A, Ingason A, Gudnadottir VG, Desnica N, Hicks A, Gylfason A, Gudbjartsson DF, Jonsdottir GM, Sainz J, Agnarsson K, Birgisdottir B, Ghosh S, Olafsdottir A, Cazier JB, Kristjansson K, Frigge ML, Thorgeirsson TE, Gulcher JR, Kong A, Stefansson K: A common inversion under selection in Europeans. Nat Genet. 2005, 37: 129-137. 10.1038/ng1508.
Article
CAS
PubMed
Google Scholar
Gornung E, Gabrielli I, Cataudella S, Sola L: CMA3-banding pattern and fluorescence in situ hybridization with 18S rRNA genes in zebrafish chromosomes. Chromosome Res. 1997, 5: 40-46. 10.1023/A:1018441402370.
Article
CAS
PubMed
Google Scholar
Daga RR, Thode G, Amores A: Chromosome complement, C-banding, Ag-NOR and replication banding in the zebrafish Danio rerio. Chromosome Res. 1996, 4: 29-32. 10.1007/BF02254941.
Article
CAS
PubMed
Google Scholar
Phillips RB, Reed KM: Localization of repetitive DNAs to zebrafish (Danio rerio) chromosomes by fluorescence in situ hybridization (FISH). Chromosome Res. 2000, 8: 27-35. 10.1023/A:1009271017998.
Article
CAS
PubMed
Google Scholar
Gornung E, De Innocentiis S, Annesi F, Sola L: Zebrafish 5S rRNA genes map to the long arms of chromosome 3. Chromosome Res. 2000, 8: 362-10.1023/A:1009252017097.
Article
CAS
PubMed
Google Scholar
Shepard JL, Amatruda JF, Finkelstein D, Ziai J, Finley KR, Stern HM, Chiang K, Hersey C, Barut B, Freeman JL, Lee C, Glickman JN, Kutok JL, Aster JC, Zon LI: A mutation in separase causes genome instability and increased susceptibility to epithelial cancer. Genes Dev. 2007, 21: 55-59. 10.1101/gad.1470407.
Article
CAS
PubMed Central
PubMed
Google Scholar
Westerfield M: The Zebrafish Book. A Guide for the Laboratory Use of Zebrafish (Danio rerio). 2000, Eugene, OR: University of Oregon Press
Google Scholar
Ng BL, Carter NP: Factors affecting flow karyotype resolution. Cytometry. 2006, 69 (9): 1028-1036. 10.1002/cyto.a.20330.
Article
PubMed
Google Scholar
Trask B, van-den-Engh G, Gray J: Inheritance of chromosome heteromorphisms analyzed by high-resolution bivariate flow karyotyping. Am J Hum Genet. 1989, 45: 753-756.
CAS
PubMed Central
PubMed
Google Scholar
Trask B, van-den-Engh G, Mayall B, Gray J: Chromosome heteromorphisms analyzed by high-resolution bivariate flow karyotyping. Am J Hum Genet. 1989, 45: 739-752.
CAS
PubMed Central
PubMed
Google Scholar
Trask B, van-den-Engh G, Nussbaum R, Schwartz C, Gray J: Quantification of the DNA content of structurally abnormal X chromosomes and X chromosome aneuploidy using high resolution bivariate flow karyotyping. Cytometry. 1990, 11: 184-95. 10.1002/cyto.990110121.
Article
CAS
PubMed
Google Scholar
Langford CF, Fischer PE, Binns MM, Holmes NG, Carter NP: Chromosome-specific paints from a high-resolution flow karyotype of the dog. Chromosome Res. 1996, 4: 115-123. 10.1007/BF02259704.
Article
CAS
PubMed
Google Scholar