Bartel DP. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 2004;116:281–97.
Article
CAS
PubMed
Google Scholar
Nilsen TW. Mechanisms of microRNA-mediated gene regulation in animal cells. Trends Genet. 2007;23:243–9.
Article
CAS
PubMed
Google Scholar
Pritchard CC, Cheng HH, Tewari M. MicroRNA profiling: approaches and considerations. Nat Rev Genet. 2012;13:358–69.
Article
CAS
PubMed
PubMed Central
Google Scholar
Boss IW, Renne R. Viral miRNAs and immune evasion. Biochim Biophys Acta. 2011;1809:708–14.
Article
CAS
PubMed
Google Scholar
Bizuayehu TT, Babiak I. MicroRNA in teleost fish. Genome Biol Evol. 2014;6:1911–37.
Article
PubMed
PubMed Central
Google Scholar
Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, Peck D, Sweet-Cordero A, Ebert BL, Mak RH, Ferrando AA, Downing JR, Jacks T, Horvitz HR, Golub TR. MicroRNA expression profiles classify human cancers. Nature. 2005;435:834–8.
Article
CAS
PubMed
Google Scholar
Beermann J, Piccoli MT, Viereck J, Thum T. Non-coding RNAs in Development and Disease: Background, Mechanisms, and Therapeutic Approaches. Physiol Rev. 2016;96:1297–325.
Article
PubMed
Google Scholar
Varamo C, Occelli M, Vivenza D, Merlano M, Lo Nigro C. MicroRNAs Role as Potential Biomarkers and Key Regulators in Melanoma. Genes Chromosomes Cancer. 2016. doi: 10.1002/gcc.22402.
Piedade D, Azevedo-Pereira JM. The Role of microRNAs in the Pathogenesis of Herpesvirus Infection. Viruses. 2016;8(6):156.
Hussain M, Torres S, Schnettler E, Funk A, Grundhoff A, Pijlman GP, Khromykh AA, Asgari S. West Nile virus encodes a microRNA-like smallRNA in the 3′ untranslated region which up-regulates GATA4 mRNA andfacilitates virus replication in mosquito cells. Nucleic Acids Res. 2012;40:2210–23.
Article
CAS
PubMed
Google Scholar
Singh CP, Singh J, Nagaraju J. A baculovirus-encoded microRNA (miRNA) suppresses its host miRNA biogenesis by regulating the exportin-5cofactor ran. J Virol. 2012;86:7867–79.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang BC, Zhang J, Sun L. In-depth profiling and analysis of host and viral microRNAs in Japanese flounder (Paralichthys olivaceus) infected with megalocytivirus reveal involvement of microRNAs in host-virus interaction in teleost fish. BMC Genomics. 2014;15:878.
Article
PubMed
PubMed Central
Google Scholar
Harold C, Cox D, Riley KJ. Epstein-Barr viral microRNAs target caspase 3. Virol J. 2016;13:145.
Article
PubMed
PubMed Central
Google Scholar
El-Ekiaby NM, Mekky RY, Riad SE, Elhelw DS, El-Sayed M, Esmat G, Abdelaziz AI. miR-148a and miR-30a limit HCV-dependent suppression of the lipid droplet protein, ADRP, in HCV infected cell models. J Med Virol. 2016. doi: 10.1002/jmv.24677.
Fan N, Wang J. MicroRNA 34a contributes to virus-mediated apoptosis through binding to its target gene Bax in influenza A virus infection. Biomed Pharmacother. 2016;83:1464–70.
Article
CAS
PubMed
Google Scholar
He B, Li W, Wu Y, Wei F, Gong Z, Bo H, Wang Y, Li X, Xiang B, Guo C, Liao Q, Chen P, Zu X, Zhou M, Ma J, Li X, Li Y, Li G, Xiong W, Zeng Z. Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103. Cell Death Dis. 2016;7:e2353.
Article
CAS
PubMed
PubMed Central
Google Scholar
Lau B, Poole E, Van Damme E, Bunkens L, Sowash M, King H, Murphy E, Wills M, Van Loock M, Sinclair J. Human cytomegalovirus miR-UL112-1 promotes the down-regulation of viral immediate early gene expression during latency to prevent T cell recognition of latently infected cells. J Gen Virol. 2016. doi: 10.1099/jgv.0.000546.
FAO. Fishery and aquaculture statistics yearbook. Rome: Food and Agriculture Oranization of the United Nations; 2016.
Rao Y, Su J. Insights into the antiviral immunity against grass carp (Ctenopharyngodon idella) reovirus (GCRV) in grass carp. J Immunol Res. 2015;2015:670437.
Article
PubMed
PubMed Central
Google Scholar
Zeng W, Wang Y, Liang H, Liu C, Song X, Shi C, Wu S, Wang Q. A one-step duplex rRT-PCR assay for the simultaneous detection of grass carp reovirus genotypes I and II. J Virol Methods. 2014;210C:32–5.
Article
Google Scholar
Jian JC, Wang Y, Yan XY, Ding Y, Wu ZH, Lu YS. Molecular cloning and prokaryotic expression of vp5 gene of grass carp reovirusstrain GCRV096. Virus Genes. 2013;47:483–9.
Article
CAS
PubMed
Google Scholar
Jing HL, Zhang LF, Fang ZZ, Xu LP, Zhang M, Wang N, Jiang YL, Lin XM. Detection of grass carp reovirus (GCRV) with monoclonal antibodies. Arch Virol. 2014;159:649–55.
Article
CAS
Google Scholar
Zhou Y, Fan YD, Zeng LB, Ma J. Prokaryotic expression and immunoassay of grass carp reovirus capsid VP6 protein. Acta Virol. 2013;57:456–61.
Article
CAS
PubMed
Google Scholar
Zhu B, Liu GL, Gong YX, Ling F, Wang GX. Protective immunity of grass carp immunized with DNA vaccine encoding the vp7 gene of grass carp reovirus using carbon nanotubes as a carrier molecule. Fish Shellfish Immunol. 2015;42:325–34.
Article
CAS
PubMed
Google Scholar
Xu D, Song L, Wang H, Xu X, Wang T, Lu L. Proteomic analysis of cellular protein expression profiles in response to grass carp reovirus infection. Fish Shellfish Immunol. 2015;44:515–24.
Article
CAS
PubMed
Google Scholar
Wang Q, Zeng W, Liu C, Zhang C, Wang Y, Shi C, Wu S. Complete genome sequence of a reovirus isolated from grass carp, indicating different genotypes of GCRV in China. J Virol. 2012;86:12466.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wang Y, Lu Y, Zhang Y, Ning Z, Li Y, Zhao Q, Lu H, Huang R, Xia X, Feng Q, Liang X, Liu K, Zhang L, Lu T, Huang T, Fan D, Weng Q, Zhu C, Lu Y, Li W, Wen Z, Zhou C, Tian Q, Kang X, Shi M, Zhang W, Jang S, Du F, He S, Liao L, Li Y, Gui B, He H, Ning Z, Yang C, He L, Luo L, Yang R, Luo Q, Liu X, Li S, Huang W, Xiao L, Lin H, Han B, Zhu Z. The draft genome of the grass carp (Ctenopharyngodon idellus) provides insights into its evolution and vegetarian adaptation. Nat Genet. 2015;47:625–31.
Article
CAS
PubMed
Google Scholar
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10:R25.
Article
PubMed
PubMed Central
Google Scholar
Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 2014;42:D68–73.
Article
CAS
PubMed
Google Scholar
Xu X, Shen Y, Fu J, Lu L, Li J. Next-generation sequencing identified microRNAs that associate with motile aeromonadsepticemia in grass carp. Fish Shellfish Immunol. 2015;45:94–103.
Article
CAS
PubMed
Google Scholar
Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 2010;40:37–52.
Article
Google Scholar
Zhou L, Chen J, Li Z, Li X, Hu X, Huang Y, Zhao X, Liang C, Wang Y, Sun L, Shi M, Xu X, Shen F, Chen M, Han Z, Peng Z, Zhai Q, Chen J, Zhang Z, Yang R, Ye J, Guan Z, Yang H, Gui Y, Wang J, Cai Z, Zhang X. Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associatewith clear cell renal cell carcinoma. PLoS One. 2010;5:e15224.
Article
CAS
PubMed
PubMed Central
Google Scholar
Betel D, Koppal A, Agius P, Sander C, Leslie C. Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol. 2010;11:R90.
Article
PubMed
PubMed Central
Google Scholar
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E. he role of site accessibility in microRNA target recognition. Nat Genet. 2007;39:1278–84.
Article
CAS
PubMed
Google Scholar
Bindea G, Mlecnik B, Hackl H, Charoentong P, Tosolini M, Kirilovsky A, Fridman WH, Pagès F, Trajanoski Z, Galon J. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinformatics. 2009;25:1091–3.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 2008;36:D480–4.
Article
CAS
PubMed
Google Scholar
Xie C, Mao X, Huang J, Ding Y, Wu J, Dong S, Kong L, Gao G, Li CY, Wei L. KOBAS 2.0:web server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res. 2011;39:W316–22.
Article
CAS
PubMed
PubMed Central
Google Scholar
Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, Hadfield J, Bertone P, Caldas C. Systematic comparison of microarray profiling, real-time PCR, and next-generationsequencing technologies for measuring differential microRNA expression. RNA. 2010;16:991–1006.
Article
CAS
PubMed
PubMed Central
Google Scholar
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C (T)) Method. Methods. 2001;25:402–8.
Article
CAS
PubMed
Google Scholar
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W, Smyth GK. limma powers differential expression analyses for RNA-sequencing and microarray studies. Nucleic Acids Res. 2015;43:e47.
Article
PubMed
PubMed Central
Google Scholar
Najib A, Kim MS, Choi SH, Kang YJ, Kim KH. Changes in microRNAs expression profile of olive flounder (Paralichthys olivaceus) inresponse to viral hemorrhagic septicemia virus (VHSV) infection. Fish Shellfish Immunol. 2016;51:384–91.
Article
CAS
PubMed
Google Scholar
Hong X, Qin J, Chen R, Yuan L, Zha J, Wang Z. Identification and characterization of novel and conserved microRNAs in several tissues of the Chinese rare minnow (Gobiocypris rarus) based on illumina deep sequencingtechnology. BMC Genomics. 2016;17:283.
Article
PubMed
PubMed Central
Google Scholar
Ma H, Weber GM, Hostuttler MA, Wei H, Wang L, Yao J. MicroRNA expression profiles from eggs of different qualities associated with post-ovulatory ageing in rainbow trout (Oncorhynchus mykiss). BMC Genomics. 2015;16:201.
Article
PubMed
PubMed Central
Google Scholar
Wongwarangkana C, Fujimori KE, Akiba M, Kinoshita S, Teruya M, Nezuo M, Masatoshi T, Watabe S, Asakawa S. Deep sequencing, profiling and detailed annotation of microRNAs in Takifugu rubripes. BMC Genomics. 2015;16:457.
Article
PubMed
PubMed Central
Google Scholar
Grundhoff A, Sullivan CS. Virus-encoded microRNAs. Virology. 2011;411:325–43.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yan Y, Guo C, Ni S, Wei J, Li P, Wei S, Cui H, Qin Q. Singapore grouper iridovirus (SGIV) encoded SGIV-miR-13 attenuates viral infection via modulating major capsid protein expression. Virus Res. 2015;205:45–53.
Article
CAS
PubMed
Google Scholar
Harwig A, Das AT, Berkhout B. Retroviral microRNAs. Curr Opin Virol. 2014;7:47–54.
Article
PubMed
Google Scholar
Rouha H, Thurner C, Mandl CW. Functional microRNA generated from a cytoplasmic RNA virus. Nucleic Acids Res. 2010;38:8328–37.
Article
CAS
PubMed
PubMed Central
Google Scholar
Langlois RA, Shapiro JS, Pham AM, tenOever BR. In vivo delivery of cytoplasmic RNA virus-derived miRNAs. Mol Ther. 2012;20:367–75.
Article
CAS
PubMed
Google Scholar
Liu L, Liu L, Shi J, Tan M, Xiong J, Li X, Hu Q, Yi Z, Mao D. MicroRNA-34b mediates hippocampal astrocyte apoptosis in a rat model of recurrent seizures. BMC Neurosci. 2016;17:56.
Article
PubMed
PubMed Central
Google Scholar
Sakurai K, Mikamoto K, Shirai M, Iguchi T, Ito K, Takasaki W, Mori K. MicroRNA profiles in a monkey testicular injury model induced by testicular hyperthermia. J Appl Toxicol. 2016;36:1614–21.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wu Z, Wu Y, Tian Y, Sun X, Liu J, Ren H, Liang C, Song L, Hu H, Wang L, Jiao B. Differential effects of miR-34c-3p and miR-34c-5p on the proliferation, apoptosis and invasion of glioma cells. Oncol Lett. 2013;6:1447–52.
CAS
PubMed
PubMed Central
Google Scholar
Li F, Chen H, Huang Y, Zhang Q, Xue J, Liu Z, Zheng F. miR-34c plays a role of tumor suppressor in HEC-1-B cells by targeting E2F3 protein. Oncol Rep. 2015;33:3069–74.
CAS
PubMed
Google Scholar
Shi M, Huang R, Du F, Pei Y, Liao L, Zhu Z, Wang Y. RNA-seq profiles from grass carp tissues after reovirus (GCRV) infection based on singular and modular enrichment analyses. Mol Immunol. 2014;61:44–53.
Article
CAS
PubMed
Google Scholar
Hamad OA, Bäck J, Nilsson PH, Nilsson B, Ekdahl KN. Platelets, complement, and contact activation: partners in inflammation and thrombosis. Adv Exp Med Biol. 2012;946:185–205.
Article
CAS
PubMed
Google Scholar
Meri S. Complement activation in diseases presenting with thrombotic microangiopathy. Eur J Intern Med. 2013;24:496–502.
Article
CAS
PubMed
Google Scholar