Sachse K, Laroucau K. Avian chlamydiosis: two more bacterial players discovered. Vet J. 2014;200(3):347–8.
Article
PubMed
Google Scholar
Li J, Guo W, Kaltenboeck B, Sachse K, Yang Y, Lu G, et al. Chlamydia pecorum is the endemic intestinal species in cattle while C. gallinacea, C. psittaci and C. pneumoniae associate with sporadic systemic infection. Vet Microbiol. 2016;193:93–9.
Article
PubMed
Google Scholar
Li L, Luther M, Macklin K, Pugh D, Li J, Zhang J, et al. Chlamydia gallinacea: a widespread emerging Chlamydia agent with zoonotic potential in backyard poultry. Epidemiol Infect. 2017;145(13):2701–3.
Guo W, Li J, Kaltenboeck B, Gong J, Fan W, Wang C. Chlamydia gallinacea, not C. psittaci, is the endemic chlamydial species in chicken (Gallus gallus). Sci Rep. 2016;6:19638.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zocevic A, Vorimore F, Marhold C, Horvatek D, Wang D, Slavec B, et al. Molecular characterization of atypical Chlamydia and evidence of their dissemination in different European and Asian chicken flocks by specific real-time PCR. Environ Microbiol. 2012;14(8):2212–22.
Article
CAS
PubMed
Google Scholar
Krautwald-Junghanns ME, Stolze J, Schmidt V, Bohme J, Sachse K, Cramer K. Efficacy of doxycycline for treatment of chlamydiosis in flocks of racing and fancy pigeons. Tierarztl Prax Ausg K Kleintiere Heimtiere. 2013;41(6):392–8.
PubMed
Google Scholar
Laroucau K, Aaziz R, Meurice L, Servas V, Chossat I, Royer H, et al. Outbreak of psittacosis in a group of women exposed to Chlamydia psittaci-infected chickens. Euro Surveill. 2015;20(24)
Laroucau K, Vorimore F, Aaziz R, Berndt A, Schubert E, Sachse K. Isolation of a new chlamydial agent from infected domestic poultry coincided with cases of atypical pneumonia among slaughterhouse workers in France. Infect Genet Evol. 2009;9(6):1240–7.
Article
PubMed
Google Scholar
Bachmann NL, Polkinghorne A, Timms P. Chlamydia genomics: providing novel insights into chlamydial biology. Trends Microbiol. 2014;22(8):464–72.
Article
CAS
PubMed
Google Scholar
Taylor-Brown A, Vaughan L, Greub G, Timms P, Polkinghorne A. Twenty years of research into Chlamydia-like organisms: a revolution in our understanding of the biology and pathogenicity of members of the phylum Chlamydiae. Pathog Dis. 2015;73(1):1–15.
Article
CAS
PubMed
Google Scholar
Holzer M, Laroucau K, Creasy HH, Ott S, Vorimore F, Bavoil PM, et al. Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3. Genome Announc. 2016;4(4)
Sachse K, Laroucau K, Riege K, Wehner S, Dilcher M, Creasy HH, et al. Evidence for the existence of two new members of the family Chlamydiaceae and proposal of Chlamydia avium sp. nov. and Chlamydia gallinacea sp. nov. Syst Appl Microbiol. 2014;37(2):79–88.
Article
PubMed
Google Scholar
Pannekoek Y, Morelli G, Kusecek B, Morre SA, Ossewaarde JM, Langerak AA, et al. Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis. BMC Microbiol. 2008;8:42.
Article
PubMed
PubMed Central
Google Scholar
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics. 2008;9:75.
Article
PubMed
PubMed Central
Google Scholar
Carver T, Berriman M, Tivey A, Patel C, Bohme U, Barrell BG, et al. Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database. Bioinformatics. 2008;24(23):2672–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, et al. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012;28(12):1647–9.
Article
PubMed
PubMed Central
Google Scholar
Darling AE, Mau B, Perna NT. Progressive Mauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One. 2010;5(6):e11147.
Article
PubMed
PubMed Central
Google Scholar
Katoh K, Standley DM. MAFFT: iterative refinement and additional methods. Methods Mol Biol. 2014;1079:131–46.
Article
PubMed
Google Scholar
Librado P, Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 2009;25(11):1451–2.
Article
CAS
PubMed
Google Scholar
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59(3):307–21.
Article
CAS
PubMed
Google Scholar
Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST ring image generator (BRIG): simple prokaryote genome comparisons. BMC Genomics. 2011;12:402.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sullivan MJ, Petty NK, Beatson SA. Easyfig: a genome comparison visualizer. Bioinformatics. 2011;27(7):1009–10.
Article
CAS
PubMed
PubMed Central
Google Scholar
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J. DNAPlotter: circular and linear interactive genome visualization. Bioinformatics. 2009;25(1):119–20.
Article
CAS
PubMed
Google Scholar
Jolley KA, Maiden MC. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics. 2010;11:595.
Article
PubMed
PubMed Central
Google Scholar
Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9(8):772.
Article
CAS
PubMed
PubMed Central
Google Scholar
Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics. 2001;17(8):754–5.
Article
CAS
PubMed
Google Scholar
Nunes A, Gomes JP. Evolution, phylogeny, and molecular epidemiology of Chlamydia. Infect Genet Evol. 2014;23:49–64.
Article
CAS
PubMed
Google Scholar
Wolff BJ, Morrison SS, Pesti D, Ganakammal SR, Srinivasamoorthy G, Changayil S, et al. Chlamydia psittaci comparative genomics reveals intraspecies variations in the putative outer membrane and type III secretion system genes. Microbiology. 2015;161(7):1378–91.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jelocnik M, Bachmann NL, Kaltenboeck B, Waugh C, Woolford L, Speight KN, et al. Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas. BMC Genomics. 2015;16:893.
Article
PubMed
PubMed Central
Google Scholar
Abdelsamed H, Peters J, Byrne GI. Genetic variation in Chlamydia trachomatis and their hosts: impact on disease severity and tissue tropism. Future Microbiol. 2013;8(9):1129–46.
Article
CAS
PubMed
PubMed Central
Google Scholar
Mital JMN, Dorward DW, Dooley CA, Hackstadt T. Role for chlamydial inclusion membrane proteins in inclusion membrane structure and biogenesis. PLoS One. 2013;8(5):e63426.
Article
CAS
PubMed
PubMed Central
Google Scholar
Vasilevsky S, Stojanov M, Greub G, Baud D. Chlamydial polymorphic membrane proteins: regulation, function and potential vaccine candidates. Virulence. 2016;7(1):11–22.
Article
CAS
PubMed
Google Scholar
Gong S, Yang Z, Lei L, Shen L, Zhong G. Characterization of Chlamydia trachomatis plasmid-encoded open reading frames. J Bacteriol. 2013;195(17):3819–26.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jelocnik M, Bachmann NL, Seth-Smith H, Thomson NR, Timms P, Polkinghorne AM. Molecular characterisation of the Chlamydia pecorum plasmid from porcine, ovine, bovine, and koala strains indicates plasmid-strain co-evolution. PeerJ. 2016;4:e1661.
Article
PubMed
PubMed Central
Google Scholar
Legione AR, Patterson JL, Whiteley PL, Amery-Gale J, Lynch M, Haynes L, et al. Identification of unusual Chlamydia pecorum genotypes in Victorian koalas (Phascolarctos cinereus) and clinical variables associated with infection. J Med Microbiol. 2016;65(5):420–8.
Article
CAS
PubMed
Google Scholar
Sachse K, Laroucau K, Hotzel H, Schubert E, Ehricht R, Slickers P. Genotyping of Chlamydophila psittaci using a new DNA microarray assay based on sequence analysis of ompA genes. BMC Microbiol. 2008;8:63.
Article
PubMed
PubMed Central
Google Scholar
Carlson JH, Porcella SF, McClarty G, Caldwell HD. Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains. Infect Immun. 2005;73(10):6407–18.
Article
CAS
PubMed
PubMed Central
Google Scholar
Heinemann IU, Jahn M, Jahn D. The biochemistry of heme biosynthesis. Arch Biochem Biophys. 2008;474(2):238–51.
Article
CAS
PubMed
Google Scholar
Panek H, O’Brian MR. A whole genome view of prokaryotic haem biosynthesis. Microbiology. 2002;148(Pt 8):2273–82.
Article
CAS
PubMed
Google Scholar
Nans A, Kudryashev M, Saibil HR, Hayward RD. Structure of a bacterial type III secretion system in contact with a host membrane in situ. Nat Commun. 2015;6:10114.
Article
CAS
PubMed
PubMed Central
Google Scholar
Peters J, Wilson DP, Myers G, Timms P, Bavoil PM. Type III secretion a la Chlamydia. Trends Microbiol. 2007;15(6):241–51.
Article
CAS
PubMed
Google Scholar
Bachmann NL, Fraser TA, Bertelli C, Jelocnik M, Gillett A, Funnell O, et al. Comparative genomics of koala, cattle and sheep strains of Chlamydia pecorum. BMC Genomics. 2014;15:667.
Article
PubMed
PubMed Central
Google Scholar
Borges V, Gomes JP. Deep comparative genomics among Chlamydia trachomatis lymphogranuloma venereum isolates highlights genes potentially involved in pathoadaptation. Infect Genet Evol. 2015;32:74–88.
Article
CAS
PubMed
Google Scholar
Grimwood J, Olinger L, Stephens RS. Expression of Chlamydia pneumoniae polymorphic membrane protein family genes. Infect Immun. 2001;69(4):2383–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean D. Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range. MBio. 2013;4(2)
Voigt A, Schofl G, Saluz HP. The Chlamydia psittaci genome: a comparative analysis of intracellular pathogens. PLoS One. 2012;7(4):e35097.
Article
CAS
PubMed
PubMed Central
Google Scholar
Read TD, Brunham RC, Shen C, Gill SR, Heidelberg JF, White O, et al. Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 2000;28(6):1397–406.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rajaram K, Giebel AM, Toh E, Hu S, Newman JH, Morrison SG, et al. Mutational analysis of the Chlamydia muridarum plasticity zone. Infect Immun. 2015;83(7):2870–81.
Article
CAS
PubMed
PubMed Central
Google Scholar
Pickett MA, Everson JS, Pead PJ, Clarke IN. The plasmids of Chlamydia trachomatis and Chlamydophila pneumoniae (N16): accurate determination of copy number and the paradoxical effect of plasmid-curing agents. Microbiology. 2005;151(Pt 3):893–903.
Article
CAS
PubMed
Google Scholar
Rockey DD. Unraveling the basic biology and clinical significance of the chlamydial plasmid. J Exp Med. 2011;208(11):2159–62.
Article
CAS
PubMed
PubMed Central
Google Scholar