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  • Correction
  • Open Access

Correction to: De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

  • 1,
  • 1,
  • 2, 4,
  • 1, 3,
  • 2, 5 and
  • 1Email author
BMC Genomics201819:448

https://doi.org/10.1186/s12864-018-4840-5

  • Received: 30 May 2018
  • Accepted: 30 May 2018
  • Published:

The original article was published in BMC Genomics 2018 19:32

Correction

Following the publication of this article [1], the authors found that they incorrectly reported the BUSCO completeness for the PhyloFish brown trout and European whitefish transcriptomes. This was due to an error in their TransDecoder pipeline and restricted to those two datasets and their interpretation. Carruthers et al. apologise for this misreported result and thank the authors of the PhyloFish database for bringing it to their attention.

The correct version of Table 3 has been included in this correction.
Table 3

Summary of the complete, duplicated, fragmented and missing orthologs inferred from Benchmarking Universal Single-Copy Orthologs (BUSCO) search against the 4584 single-copy orthologs for Actinopterygii

BUSCO statistic

Atlantic salmon

Brown trout

Arctic charr

European whitefish

PhyloFish brown trout

PhyloFish European whitefish

NCBI Atlantic salmon RefSeq Proteins

Complete BUSCOs

3461 (79%)

3596 (78%)

3589 (78%)

3512 (76%)

4254 (92%)

4202 (91%)

4476 (97%)

Complete -single-copy BUSCOs

1900 (42%)

1897 (41%)

1988 (44%)

1938 (42%)

2327 (50%)

2444 (53%)

1398 (30%)

Complete - duplicated BUSCOs

1741 (37%)

1699 (37%)

1601 (34%)

1574 (34%)

1927 (43%)

1758 (38%)

3078 (67%)

Fragmented BUSCOs

439 (10%)

424 (10%)

431 (10%)

452 (11%)

83 (1.8%)

113 (2.4%)

80 (1.7%)

Missing BUSCOs

504 (10%)

564 (12%)

564 (12%)

620 (13%)

247 (5.3%)

269 (5.8%)

28 (0.6%)

Notes

Declarations

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Authors’ Affiliations

(1)
Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, G12 8QQ, Glasgow, UK
(2)
Glasgow Polyomics, Wolfson Wohl Cancer Research Centre, University of Glasgow, G61 1QH, Glasgow, UK
(3)
Scottish Centre for Ecology and the Natural Environment, University of Glasgow, Rowardennan, G63 0AW, UK
(4)
Present Address: Fios Genomics Ltd., Nine Edinburgh Bioquarter, 9 Little France Road, Edinburgh, EH16 4UX, UK
(5)
Institute of Molecular, Cell and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, G12 8QQ, Glasgow, UK

Reference

  1. Carruthers M, et al. De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species. BMC Genomics. 2018;19:32. https://doi.org/10.1186/s12864-017-4379-x.View ArticlePubMedPubMed CentralGoogle Scholar

Copyright

© The Author(s). 2018

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