Brown JH, Stevens GC, Kaufman DM. The geographic range: size,shape, boundaries, and internal structure. Annu Rev Ecol Syst. 1996;27:597–623.
Article
Google Scholar
Gaston KJ. Geographic range limits: achieving synthesis. Proc R Soc B Biol Sci. 2009;276:1395–406.
Article
Google Scholar
Gaffney O, Steffen W. The Anthropocene equation. Anthr Rev. 2017;4:53–61.
Google Scholar
Bradshaw AD. Evolutionary significance of phenotypic plasticity in plants. Adv Genet. 1965;13:115–55.
Article
Google Scholar
Forsmsn A. Rethinking phenotypic plasticity and its consequences for individuals, populatins and species. Heredity. 2015;115:276–84.
Article
Google Scholar
López-Maury L, Marguerat S, Bähler J. Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet. 2008;9:583–93.
Article
PubMed
CAS
Google Scholar
Hodgins-Davis A, Townsend JP. Evolving gene expression: from G to E to G ?? E. Trends Ecol Evol. 2009;24:649–58.
Article
PubMed
PubMed Central
Google Scholar
Stern DL, Orgogozo V. The loci of evolution: how predictable is genetic evolution? Evolution. 2008;62:2155–77.
Article
PubMed
PubMed Central
Google Scholar
Jaglo-Ottosen KR. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science. 1998;280:104–6.
Article
CAS
PubMed
Google Scholar
Xu C, et al. De novo and comparative transcriptome analysis of cultivated and wild spinach. Sci Rep. 2015;5:17706.
Article
CAS
PubMed
PubMed Central
Google Scholar
Howarth BYCJ, Ougham HJ. Tansley Review No . 51 Gene expression under temperature stress. New Phytol. 1993;125:1–26.
Article
CAS
PubMed
Google Scholar
Swindell WR, Huebner M, Weber AP. Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways. BMC Genomics. 2007;8:125.
Article
PubMed
PubMed Central
CAS
Google Scholar
Hasanuzzaman M, Nahar K, Alam MM, Roychowdhury R, Fujita M. Physiological, biochemical, and molecular mechanisms of heat stress tolerance in plants. Int J Mol Sci. 2013;14:9643–84.
Article
PubMed
PubMed Central
CAS
Google Scholar
Cook D, Fowler S, Fiehn O, Thomashow MF. From the cover: a prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc Natl Acad Sci. 2004;101:15243–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yoon DH, et al. Overexpression of OsCYP19-4 increases tolerance to cold stress and enhances grain yield in rice (Oryza sativa). J Exp Bot. 2016;67:69–82.
Article
CAS
PubMed
Google Scholar
Nicky JA, Peter EU. The interaction of plant biotic and abiotic stresses: from genes to the field. J Exp Bot. 2012;63:3523–44.
Article
CAS
Google Scholar
Rasmussen S, Barah P, Suarez-Rodriguez MC, Bressendorff S, Mundy J, et al. Transcriptome responses to combinations of stresses in Arabidopsis. Plant Physiol. 2013;161:1783–94.
Article
CAS
PubMed
PubMed Central
Google Scholar
Sewelam N, Oshima Y, Mitsuda N, Ohme-Takagi M. A step towards understanding plant responses to multiple environmental stresses: a genome-wide study. Plant Cell Environ. 2014;37:2024–35.
Article
CAS
PubMed
Google Scholar
Li Y, Wang Y, Tang Y, Kakani VG, Mahalingam R. Transcriptome analysis of heat stress response in switchgrass (Panicum virgatum L.). BMC Plant Biol. 2013;13:153.
Article
PubMed
PubMed Central
CAS
Google Scholar
Calzadilla PI, Maiale SJ, Ruiz OA, Escaray FJ. Transcriptome response mediated by cold stress in Lotus japonicus. Front Plant Sci. 2016;7:374.
Article
PubMed
PubMed Central
Google Scholar
Chen S, Li H. Heat stress regulates the expression of genes at transcriptional and post-transcriptional levels, revealed by RNA-seq in Brachypodium distachyon. Front Plant Sci. 2017;7:1–13.
Google Scholar
Nagalakshmi U, et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science. 2008;320:1344–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ekblom R, Galindo J. Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity. 2011;107:1–15.
Article
CAS
PubMed
Google Scholar
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009;10:57063.
Google Scholar
Alvarez M, Schrey AW, Richards CL. Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution? Mol Ecol. 2015;24:710–25.
Article
CAS
PubMed
Google Scholar
Cheviron ZA, Whitehead A, Brumfield RT. Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient. Mol Ecol. 2008;17:4556–69.
Article
CAS
PubMed
Google Scholar
Guevara DR, Champigny MJ, Tattersall A, Dedrick J, Wong CE, et al. Transcriptomic and metabolomic analysis of Yukon Thellungiellaplants grown in cabinets and their natural habitat show phenotypic plasticity. BMC Plant Biol. 2012;12:175.
Article
CAS
PubMed
PubMed Central
Google Scholar
Yang W, Qi Y, Lu B, Qiao L, Wu Y, et al. Gene expression variations in high-altitude adaptation: a case study of the Asiatic toad (Bufo gargarizans). BMC Genet. 2017;18:62.
Article
PubMed
PubMed Central
CAS
Google Scholar
Cho SM, Lee H, Jo H, Lee H, Kang Y, et al. Comparative transcriptome analysis of field- and chamber-grown samples of Colobanthus quitensis (Kunth) Bartl, an Antarctic flowering plant. Sci Rep. 2018;8:11049.
Article
PubMed
PubMed Central
CAS
Google Scholar
Körner C. The use of ‘altitude’ in ecological research. Trends Ecol Evol. 2007;22:569–74.
Article
PubMed
Google Scholar
Hollister RD, et al. Corrections for Elmendorf et al., Experiment, monitoring, and gradient methods used to infer climate change effects on plant communities yield consistent patterns. Proc Natl Acad Sci. 2015;112:4156.
Article
CAS
Google Scholar
Hovenden MJ, Vander Schoor JK. Nature vs nurture in the leaf morphology of southern beech, Nothofagus cunninghamii (Nothofagaceae). New Phytologist. 2003;161:585–94.
Article
PubMed
Google Scholar
Gurung PD, Ratnam J, Ramakrishnan U. Facilitative interactions among co-flowering Primula species mediated by pollinator sharing. Plant Ecol. 2018;219:1159–68.
Article
Google Scholar
Trapnell C, et al. Differential analysis of gene regulation at transcript resolution with RNA-seq. Nat Biotechnol. 2012;31:46–53.
Article
PubMed
CAS
Google Scholar
Mao X, Cai T, Olyarchuk JG, Wei L. Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics. 2005;21:3787–93.
Article
CAS
PubMed
Google Scholar
Tukey JW. Comparing individual means in the analysis of variance. Biometrics. 1949;5:99–114.
Article
CAS
PubMed
Google Scholar
Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA. Conservation and divergence of plant microRNA genes. Plant J. 2006;46:243–59.
Article
CAS
PubMed
Google Scholar
Boyer JS. Plant productivity and environment. Science. 1982;218:443–8.
Article
CAS
PubMed
Google Scholar
Xiong L, Schumaker KS, Zhu JK. Cell signaling during cold, drought, and salt stress. Plant Cell. 2002;14:S165–83.
Article
CAS
PubMed
PubMed Central
Google Scholar
Krasensky J. Jonak C. Drought, salt, and temperature stress-induced metabolic rearrangements and regulatory.
Lobell DB, Field CB. Global scale climate–crop yield relationships and the impacts of recent warming. Environ Res Lett. 2007;2:14002.
Article
Google Scholar
Schlesinger MJ, Ashburner M, Tissieres A. Heat shock : from Bacteria to man: Cold Spring Harb. Lab; 1982.
Zhang X, et al. Expression profile in Rice panicle: insights into heat response mechanism at reproductive stage. PLoS One. 2012;7:e49652.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ritossa F. A new puffing pattern induced by temperature shock and DNP in drosophila. Experientia. 1962;18:571–3.
Article
CAS
Google Scholar
Jung K, Gho H, Nguyen MX. Genome-wide expression analysis of HSP70 family genes in rice and identification of a cytosolic HSP70 gene highly induced under heat stress. Funct Integr Genomics. 2013;13:391–402.
Article
CAS
PubMed
Google Scholar
Waters ER. The evolution, function , structure , and expression of the plant sHSPs. J Exp Bot. 2013;64:391–403.
Article
CAS
PubMed
Google Scholar
Aitken SN, et al. Hierarchical responses of plant-soil interactions to climate change: consequences for the global carbon cycle. Ecol Lett. 2015;8:127–33.
Google Scholar
Silva-Correia J, Freitas S, Tavares RM, Lino-Neto T, Azevedo H. Phenotypic analysis of the Arabidopsis heat stress response during germination and early seedling development. Plant Methods. 2014;10:1–11.
Article
Google Scholar
Song K, Yim WC, Lee B. Expression of Heat Shock Proteins by heat stress in Soybean. Plant Breed Biotech. 2017;5:344–53.
Article
Google Scholar
Viswanathan C, Zhu J. Molecular genetic analysis of cold-regulated gene transcription. Philos Trans R Soc Lond B Biol Sci. 2002;357:877–86.
Article
CAS
PubMed
PubMed Central
Google Scholar
Laroche Â, Frick M, Huel Â, Puchalski B, Gaudet DA. Cold induced expression of plant defensin and lipid transfer protein transcripts in winter wheat. Physiol Plant. 2003;117:195–205.
Article
Google Scholar
Janska A, Marsik P, Zelenkova S, Ovesna J. Cold stress and acclimation – what is important for metabolic adjustment? Plant Biol. 2010;12:395–405.
Article
CAS
PubMed
Google Scholar
Knight MR, Knight H. Low-temperature percpetion leading to gene expression and cold tolerance in higher plants. New Phytol. 2012;195:737–51.
Article
CAS
PubMed
Google Scholar
Loddo D, Masin R, Otto S, Zanin G. Estimation of base temperature for Sorghum halepense rhizome sprouting. Weed Res. 2012;52:42–9.
Article
Google Scholar
Satorre EH, Rizzo FA, Arias SP. The effect of temperature on sprouting and early establishment of Cynodon dactylon. Weed Res. 1996;36:431–40.
Article
Google Scholar
Yukio I, Md AH, Keiji M, Hikaru A, Takuji H. Effects of planting date on emergence, growth and yield of turmeric (Gurcuma longa L.) in Okinawa prefecture, southern Japan. Jpn J Trop Agr. 2004;48:10–6.
Google Scholar
Polunin O, Stainton A. Flowers of the Himalaya: Oxford University press; 1984.
Hereford JA. Quantitative survey of local adaptation and fitness trade-offs. Am Nat. 2009;173:579–88.
Article
PubMed
Google Scholar
Blanquart F, Kaltz O, Nuismer SL, Gandon S. A practical guide to measuring local adaptation. Ecol Lett. 2013;16:1195–205.
Article
PubMed
Google Scholar
IPCC (Intergovernmental Panel on Climate Change). In: Solomon S, et al., editors. Climate change 2007: the physical science basis. Contribution of Working Group I to the Fourth assessment report of the Intergovernmental Panel on Climate Change. Cambridge: Cambridge University Press; 2007. p. 235–336.
Chapter
Google Scholar
IPCC. In: Stocker TF, et al., editors. Climate Change 2013: The Physical Science Basis Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. New York: Cambridge University Press; 2013. p. 1535.
Google Scholar
Gale J. Availability of carbon dioxide for photosynthesis at high altitudes: theoretical considerations. Ecology. 1972;53:494–7.
Article
Google Scholar
Muoki RC, Paul A, Kumari A, Singh K, Kumar S. An improved protocol for the isolation of RNA from roots of tea (Camellia sinensis (L.) O. Kuntze). Mol Biotechnol. 2012;52:82–8.
Article
CAS
PubMed
Google Scholar
Andrews S. Babraham Bioinformatics - FastQC A Quality Control tool for High Throughput Sequence Data. Available at: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
Grabherr MG, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 2011;29:644–52.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li W, Godzik A. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006;22:1658–9.
Article
CAS
PubMed
Google Scholar
Kim D, et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013;14:36.
Article
CAS
Google Scholar
Trapnell C, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 2010;28:511–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Trapnell C, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and cufflinks. Nat Protoc. 2012;7:562–78.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ashburner M, et al. Gene ontologie: tool for the unification of biology. Nat Genet. 2000;25:25–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Van Bel M, et al. TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes. Genome Biol. 2013;14:134.
Article
Google Scholar
Ye J, et al. WEGO: a web tool for plotting GO annotations. Nucleic Acids Res. 2006;34:293–7.
Article
Google Scholar
Conesa A, et al. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005;21:3674–6.
Article
CAS
PubMed
Google Scholar
Ogata H, et al. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 1999;27:29–34.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wu J, Mao X, Cai T, Luo J, Wei L. KOBAS server: a web-based platform for automated annotation and pathway identification. Nucleic Acids Res. 2006;34:720–4.
Article
CAS
Google Scholar
Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JA. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res. 2007;35(Web Server issue):W71–4. https://doi.org/10.1093/nar/gkm306.
Article
PubMed
PubMed Central
Google Scholar
Singh K, et al. 26S rRNA-based internal control gene primer pair for reverse transcription-polymerase chain reaction-based quantitative expression studies in diverse plant species. Anal Biochem. 2004;335:330–3.
Article
CAS
PubMed
Google Scholar
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2(−Delta Delta C(T)) method. Methods. 2001;25:402–8.
Article
CAS
PubMed
Google Scholar