Dimova DK, Stevaux O, Frolov MV, Dyson NJ. Cell cycle-dependent and cell cycle-independent control of transcription by the Drosophila E2F/RB pathway. Genes Dev. 2003;17(18):2308–20.
Sharma MK, Kumar R, Solanke AU, Sharma R, Tyagi AK, Sharm AK. Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato. Mol Gen Genomics. 2010;284:455–75.
Article
CAS
Google Scholar
Jofuku KD, Omidyar PK, Gee Z, Okamuro JK. Control of seed mass and seed yield by the floral homeotic gene APETALA2. Proc Natl Acad Sci U S A. 2005;102(8):3117–22.
Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K. DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem Biophys Res Commun. 2002;290(3):998–1009.
Kunst L, Klenz JE, Martinez-Zapater J, Haughn GW. AP2 gene determines the identity of perianth organs in flowers of Arabidopsis thaliana. Plant Cell. 1989;1(12):1195–208.
Du C, Hu K, Xian S, Liu C, Fan J, Tu J, Fu T. Dynamic transcriptome analysis reveals AP2/ERF transcription factors responsible for cold stress in rapeseed (Brassica napus L.). Mol Gen Genomics. 2016;291(3):1053–67.
Article
CAS
Google Scholar
Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K. AP2/ERF family transcription factors in plant abiotic stress responses. Biochim Biophys Acta. 2012;1819(2):86–96.
Article
CAS
PubMed
Google Scholar
Ohme-Takagi M, Shinshi H. Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell. 1995;7(2):173–82.
Agarwal P, Agarwal PK, Joshi AJ, Sopory SK, Reddy MK. Overexpression of PgDREB2A transcription factor enhances abiotic stress tolerance and activates downstream stress-responsive genes. Mol Biol Rep. 2010;37(2):1125–35.
Article
CAS
PubMed
Google Scholar
Wang C, Wang H, Zhang J, Chen S. A seed-specific AP2-domain transcription factor from soybean plays a certain role in regulation of seed germination. Sci China C Life Sci. 2008;51(4):336–45.
Article
CAS
PubMed
Google Scholar
Raymond O, Gouzy J, Just J, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, et al. The Rosa genome provides new insights into the domestication of modern roses. Nat Genet. 2018;50(6):772–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Li M, Liu J, Hao J, Feng K, Duan A, Yang Q, Xu Z, Xiong A. Genomic identification of AP2/ERF transcription factors and functional characterization of two cold resistance-related AP2/ERF genes in celery (Apium graveolens L.). Planta. 2019;250:1265–80.
Article
CAS
PubMed
Google Scholar
Li X, Tao S, Wei S, Ming M, Huang X, Zhang S, Wu J. The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus). BMC Plant Biol. 2018;18:46.
Article
PubMed
PubMed Central
CAS
Google Scholar
Li H, Wang Y, Wu M, Li L, Li C, Han Z, Yuan J, Chen C, Song W, Wang C. Genome-wide identification of AP2/ERF transcription factors in cauliflower and expression profiling of the ERF family under salt and drought stresses. Front Plant Sci. 2017;8:946.
Jin J, Wang M, Zhang H, Khan A, Wei A, Luo D, Gong Z. Genome-wide identification of the AP2/ERF transcription factor family in pepper (Capsicum annuum L.). Genome. 2018;61(9):663–74.
Article
CAS
PubMed
Google Scholar
Ji A, Luo H, Xu Z, Zhang X, Zhu Y, Liao B, Yao H, Song J, Chen S. Genome-wide identification of the AP2/ERF gene family involved in active constituent biosynthesis in Salvia miltiorrhiza. Plant Genome. 2016;9(2):1–11.
Lakhwani D, Pandey A, Dhar YV, Bag SK, Trivedi PK, Asif MH. Genome-wide analysis of the AP2/ERF family in Musa species reveals divergence and neofunctionalisation during evolution. Sci Rep. 2016;6(1):18878.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang Z, Li X. Genome-wide identification of AP2/ERF superfamily genes and their expression during fruit ripening of chinese jujube. Sci Rep. 2018;8:15612.
Article
PubMed
PubMed Central
CAS
Google Scholar
Liu M, Sun W, Ma Z, Zheng T, Huang L, Wu Q, Zhao G, Tang Z, Bu T, Li C, Chen H. Genome-wide investigation of the AP2/ERF gene family in tartary buckwheat (Fagopyum tataricum). BMC Plant Biol. 2019;19(1):84.
Article
PubMed
PubMed Central
Google Scholar
Zhang C, Shangguan LF, Ma RJ, Sun X, Tao R, Guo L, Korir NK, Yu ML. Genome-wide analysis of the AP2/ERF superfamily in peach (Prunus persica). Genet Mol Res. 2012;11(4):4789–809.
CAS
PubMed
Google Scholar
Richau KH, Kaschani F, Verdoes M, Pansuriya TC, Niessen S, Stüber K, Colby T, Overkleeft HS, Bogyo M, Hoorn RALV d. Subclassification and biochemical analysis of plant papain-like cysteine proteases displays subfamily-specific characteristics. Plant Physiol. 2012;158(4):1583–99.
Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 2004;4:10.
Article
PubMed
PubMed Central
Google Scholar
Wang Y, Tang H, DeBarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Kissinger JC, Paterson AH, Guo H. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res. 2012;40(7):e49.
Article
CAS
PubMed
PubMed Central
Google Scholar
Jiang X, Zhang C, Lv P, Jiang G, Liu X, Dai F, Gao J. RhNAC3, a stress-associated NAC transcription factor, has a role in dehydration tolerance through regulating osmotic stress-related genes in rose petals. Plant Biotechnol J. 2014;12(1):38–48.
Article
CAS
PubMed
Google Scholar
Reis RR, da Cunha BADB, Martins PK, Martins MTB, Alekcevetch JC, Chalfun A, Andrade AC, Ribeiro AP, Qin F, Mizoi J, Yamaguchi-Shinozaki K, Nakashima K, Carvalho JDC, de Sousa CAF, Nepomuceno AL, Kobayashi AK, Molinari HBC. Induced over-expression of AtDREB2A CA improves drought tolerance in sugarcane. Plant Sci. 2014;221-222:59–68.
Article
CAS
PubMed
Google Scholar
Bernadette L, Rainer PB, Gaelle R, Janna B, Elmon S, Elke L, Imre ES. Expression of AtWRKY33 encoding a pathogen-or PAMP-responsive WRKY transcription factor is regulated by a composite DNA motif containing W box elements. Mol Plant Microbe Interact. 2007;20(4):420–9.
Son GH, Wan JR, Kim HJ, Nguyen XC, Chung WS, Hong JC, Stacey G. Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response. Mol Plant Microbe Interac. 2012;25(1):48–60.
Wang H. Promoters from kin1 and cor6.6, two homologous Arabidopsis thaliana genes: transcriptional regulation and gene expression induced by low temperature, ABA, osmoticum and dehydration. Plant Mol Biol. 1995;28(4):605–17.
Article
CAS
PubMed
Google Scholar
Dong HP, Yu H, Bao Z, Guo X, Peng J, Yao Z, Chen G, Qu S, Dong H. The ABI2-dependent abscisic acid signaling controls HrpN-induced drought tolerance in Arabidopsis. Planta. 2005;221(3):313–27.
Article
CAS
PubMed
Google Scholar
Villaecija-Aguilar JA, Hamon-Josse M, Carbonnel S, Kretschmar A, Schmid C, Dawid C, Bennett T, Gutjahr C. SMAX1/SMXL2 regulate root and root hair development downstream of KAI2-mediated signaling in Arabidopsis. PLoS Genet. 2019;15(8):e1008327.
Yang CY. Hydrogen peroxide controls transcriptional responses of ERF73/HRE1 and ADH1 via modulation of ethylene signaling during hypoxic stress. Planta. 2014;239(4):877–85.
Article
CAS
PubMed
Google Scholar
Feinbaum RL, Ausubel FM. Transcriptional regulation of the Arabidopsis thaliana chalcone synthase gene. Mol Cell Biol. 1988;8(5):1985–92.
Kim HJ, Cho HS, Pak JH, Kwon T, Lee JH, Kim DH, Lee DH, Kim CG, Chung YS. Confirmation of drought tolerance of ectopically expressed AtABF3 gene in Soybean. Mol Cells. 2018;41(7):413–22.
Garcia MNM, Cortelezzi JI, Fumagalli M, Capiati DA. Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance. Plant Mol Biol. 2018;98:137–52.
Li Q, Shi XZ, Ye SJ, Wang S, Chan R, Harkness T, Wang H. A short motif in Arabidopsis CDK inhibitor ICK1 decreases the protein level, probably through a ubiquitin-independent mechanism. Plant J. 2016;87(6):617–28.
Article
CAS
PubMed
Google Scholar
Hao GP, Zhang XH, Wang YQ, Wu ZY, Huang CL. Nucleotide variation in the NCED3 region of Arabidopsis thaliana and its association study with abscisic acid content under drought stress. J Integr Plant Biol. 2010;51(2):175–83.
Singh KB, Foley RC, Oñate-Sánchez L. Transcription factors in plant defense and stress responses. Curr Opin Plant Biol. 2002;5(5):430–6.
Lata C, Mishra AK, Muthamilarasan M, Bonthala VS, Khan Y, Prasad M. Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in Foxtail Millet (Setaria italica L.). PLoS One. 2014;9(11):e113092.
Zhuang J, Peng R, Cheng Z, Zhang J, Cai B, Zhang Z, Gao F, Zhu B, Fu X, Jin X, Chen J, Qiao Y, Xiong A, Yao Q. Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera. Sci Hortic. 2009;123(1):73–81.
Article
CAS
Google Scholar
Sara EG, Jaina M, Alex B, Sean RE, Aurélien L, Simon CP, Matloob Q, Lorna JR, Gustavo AS, Alfredo S, Erik LLS, Layla H, Lisanna P, Damiano P, Silvio CET, Robert DF. The Pfam protein families database in 2019. Nucleic Acids Res. 2018;47(D1):D427–32.
Google Scholar
Xu W, Li F, Ling L, Liu A. Genome-wide survey and expression profiles of the AP2/ERF family in castor bean (Ricinus communis L.). BMC Genom. 2013;14(1):785.
Rao G, Sui J, Zeng Y, He C, Zhang J. Genome-wide analysis of the AP2/ERF gene family in Salix arbutifolia. FEBS Open Biochem. 2015;5(1):132–7.
Article
CAS
Google Scholar
Guo B, Wei Y, Xu R, Lin S, Luan H, Lv C, Zhang X, Song X, Xu R. Genome-wide analysis of APETALA2/ethylene-responsive factor (AP2/ERF) gene family in barley (Hordeum vulgare L.). PLoS One. 2016;11(9):e0161322.
Qu L, Zhu Y. Transcription factor families in Arabidopsis: major progress and outstanding issues for future research. Curr Opin Plant Biol. 2013;9(5):544–9.
Article
CAS
Google Scholar
Feng J, Liu D, Pan Y, Gong W, Ma L, Luo J, Deng X, Zhu Y. An annotation update via cdna sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol. 2005;59(6):853–68.
Article
CAS
PubMed
Google Scholar
Manosalva PM, Davidson RM, Liu B, Zhu X, Hulbert SH, Leung H, Leach JE. A germin-like protein gene family functions as a complex quantitative trait locus conferring broad-spectrum disease resistance in rice. Plant Physiol. 2009;149(1):286–96.
Flagel LE, Wendel JF. Gene duplication and evolutionary novelty in plants. New Phytol. 2009;183(3):557–64.
Article
PubMed
Google Scholar
Fraser JA, Huang JC, Pukkila-Worley R, Alspaugh JA, Mitchell TG, Heitman J. Chromosomal translocation and segmental duplication in Cryptococcus neoformans. Eukaryot Cell. 2013;4(2):401–6.
Article
CAS
Google Scholar
Zhou D. Regulatory mechanism of plant gene transcription by GT-elements and GT-factors. Trends Plant Sci. 1999;4(6):210–4.
Article
CAS
PubMed
Google Scholar
Narusaka Y, Nakashima K, Shinwari ZK, Sakuma Y, Furihata T, Abe H, Narusaka M, Shinozaki K, Yamaguchi-Shinozaki K. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses. Plant J. 2010;34(2):137–48.
Article
Google Scholar
He C, Yu Z, Teixeira da Silva JA, Zhang J, Liu X, Wang X, Zhang X, Zeng S, Wu K, Tan J, Ma G, Luo J, Duan J. DoGMP1 from Dendrobium officinale contributes to mannose content of water-soluble polysaccharides and plays a role in salt stress response. Sci Rep. 2017;7:41010.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ambawat S, Sharma P, Yadav NR, Yadav RC. MYB transcription factor genes as regulators for plant responses: an overview. Physiol Mol Biol Plants. 2013;19(3):307–21.
Article
CAS
PubMed
PubMed Central
Google Scholar
Muhammad AA, Krzysztof W, David PK, Holger B, John J. The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in Syncytia to favour its development in Arabidopsis roots. PLoS One. 2014;9(7):e102360.
Cui M, Zhang W, Zhang Q, Xu Z, Zhu Z, Duan F, Wu R. Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice. Plant Physiol Biochem. 2011;49(12):1384–91.
Chen M, Wang Q, Cheng X, Xu Z, Li L, Ye X, Xia L, Ma Y. GmDREB2, a soybean DRE-binding transcription factor, conferred drought and high-salt tolerance in transgenic plants. Biochem Biophys Res Commun. 2007;353(2):299–305.
Liu S, Wang X, Wang H, Xin H, Yang X, Yan J, Li J, Tran L-S P, Shinozaki K, Yamaguchi-Shinozaki K, Qin F. Genome-wide analysis of ZmDREB genes and their association with natural variation in drought tolerance at seedling stage of Zea mays L. PLoS Genet. 2013;9(9):e1003790.
Hichri I, Muhovski Y, Clippe A, Žižková E, Dobrev PI, Motyka V, Lutts S. SlDREB2, a tomato dehydration-responsive element-binding 2 transcription factor, mediates salt stress tolerance in tomato and Arabidopsis. Plant Cell Environ. 2016;39(1):62–79.
Article
CAS
PubMed
Google Scholar
Li X, Zhang D, Li H, Wang Y, Zhang Y, Wood AJ. EsDREB2B, a novel truncated DREB2-type transcription factor in the desert legume Eremosparton songoricum, enhances tolerance to multiple abiotic stresses in yeast and transgenic tobacco. BMC Plant Biol. 2014;14(1):44.
Article
PubMed
PubMed Central
CAS
Google Scholar
Zhang Z, Yang Q, Zhang C, Wei L, Yue R, Li G, Lin X, Wang R. A CkDREB1 gene isolated from Caragana korshinskii Kom. enhances Arabidopsis drought and cold tolerance. Braz J Bot. 2019;42(1):1–9.
Article
Google Scholar
Yang G, Yu L, Zhang K, Zhao Y, Guo Y, Gao C. A ThDREB gene from Tamarix hispida improved the salt and drought tolerance of transgenic tobacco and T.hispida. Plant Physiol Biochem. 2017;113:187–97.
Tang Y, Liu K, Zhang J, Li X, Xu K, Zhang Y, Qi J, Yu D, Wang J, Li C. JcDREB2, a physic nut AP2/ERF gene, alters plant growth and salinity stress responses in transgenic rice. Front Plant Sci. 2017;8:306.
Qin F, Sakuma Y, Phan Tran LS, Maruyama K, Kidokoro S, Fujita Y, Fujita M, Umezawa T, Sawano Y, Miyazono K-I, Tanokura M, Shinozaki K, Yamaguchi-Shinozaki K. Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress–responsive gene expression. Plant Cell. 2008;20(6):1693–707.
Wang L, Waters MT, Smith SM. Karrikin-KAI2 signaling provides Arabidopsis seeds with tolerance to abiotic stress and inhibits germination under conditions unfavorable to seedling establishment. New Phycol. 2018;219(2):605–18.
Article
CAS
Google Scholar
Gasteiger E, Hoogland C, Gattiker A, Duvaud SE, Wilkins MR, Appel RD, Bairoch A. Protein identification and analysis tools on the ExPASy server. 2-D Proteome Anal Protoc. 2005;112:531–52.
Google Scholar
Paul H, Keun-Joon P, Takeshi O, Naoya F, Hajime H, Collier CJ, Kenta N. WoLF PSORT: protein localization predictor. Nucleic Acids Res. 2007;35:W585–7.
Article
Google Scholar
Thompson JD, Gibson TJ, Higgins DG. Multiple sequence alignment using ClustalW and ClustalX. Curr Protoc Bioinformatics. 2003;00(1):2.3.1–2.3.22.
Article
Google Scholar
Bailey TL, Mikael B, Buske FA, Martin F, Grant CE, Luca C, Ren J, Li W, Noble WS. MEME suite: tools for motif discovery and searching. Nucleic Acids Res. 2009;37(2):W202–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Voorrips RE. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered. 2002;93(1):77–8.
Article
CAS
PubMed
Google Scholar
Sudhir K, Glen S, Koichiro T. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33(7):1870–4.
Article
CAS
Google Scholar
Subramanian B, Gao S, Lercher MJ, Hu S, Chen WH. Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. Nucleic Acids Res Issue. 2019;47(W1):W270–5.
Article
CAS
Google Scholar
Lescot M, Dehais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res. 2002;30(1):325–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2− ΔΔCT method. Methods. 2001;25:402–8.
Article
CAS
PubMed
Google Scholar
Yoo S, Cho Y, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc. 2007;2:1565–72.
Article
CAS
PubMed
Google Scholar
Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1999;16(6):735–43.
Article
Google Scholar
Shi J, Fu X, Peng T, Huang X, Fan Q, Liu J. Spermine pretreatment confers dehydration tolerance of citrus in vitro plants via modulation of antioxidative capacity and stomatal response. Tree Physiol. 2010;30(7):914–22.
Article
CAS
PubMed
Google Scholar