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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Wound healing is a representative phenomenon of potato tubers subjected to mechanical injuries. Our previous results found that benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester (BTH) promoted the wo...

    Authors: Hong Jiang, Xue Li, Li Ma, Yingyue Ren, Yang Bi and Dov Prusky
    Citation: BMC Genomics 2022 23:263
    Content type: Research Published on:

  2. Ridge regression models can be used for predicting heterosis and hybrid performance. Their application to mRNA transcription profiles has not yet been investigated. Our objective was to compare the prediction ...

    Authors: Carola Zenke-Philippi, Alexander Thiemann, Felix Seifert, Tobias Schrag, Albrecht E. Melchinger, Stefan Scholten and Matthias Frisch
    Citation: BMC Genomics 2016 17:262
    Content type: Research Article Published on:

  4. Women account for 60% of all stroke deaths and are more often permanently disabled than men, despite their higher observed stroke incidence. Considering the clinical population affected by stroke, an obvious d...

    Authors: Mimmi Rehnström, Simona Denise Frederiksen, Saema Ansar and Lars Edvinsson
    Citation: BMC Genomics 2020 21:883
    Content type: Research article Published on:

  5. Atlantic cod (Gadus morhua) reared in sea-cages can experience large variations in temperature, and these have been shown to affect their immune function. We used the new 20K Atlantic cod microarray to investigat...

    Authors: Tiago S Hori, A Kurt Gamperl, Marije Booman, Gordon W Nash and Matthew L Rise
    Citation: BMC Genomics 2012 13:431
    Content type: Research article Published on:

  6. Differences in DNA methylation are known to contribute to the development of immune-related disorders in humans but relatively little is known about how methylation regulates immune function in cattle. Utilizi...

    Authors: Filiz T. Korkmaz and David E. Kerr
    Citation: BMC Genomics 2017 18:405
    Content type: Research article Published on:

  7. Whole plant senescence represents the final stage in the life cycle of annual plants, characterized by the decomposition of aging organs and transfer of nutrients to seeds, thereby ensuring the survival of nex...

    Authors: Po-Yi Chen, Thi Thuy Tu Nguyen, Ruey-Hua Lee, Tsai-Wen Hsu, Ming-Hong Kao, Takashi Gojobori, Tzen-Yuh Chiang and Chao-Li Huang
    Citation: BMC Genomics 2024 25:621
    Content type: Research Published on:

  8. Humans and mice with loss of function mutations in GPR54 (KISS1R) or kisspeptin do not progress through puberty, caused by a failure to release GnRH. The transcriptional networks regulated by these proteins in...

    Authors: Leah M Prentice, Xavier d'Anglemont de Tassigny, Steven McKinney, Teresa Ruiz de Algara, Damian Yap, Gulisa Turashvili, Steven Poon, Margaret Sutcliffe, Pat Allard, Angela Burleigh, John Fee, David G Huntsman, William H Colledge and Samuel AJ Aparicio
    Citation: BMC Genomics 2011 12:209
    Content type: Research article Published on:

  9. Polyploidy is an important phenomenon in plants because of its roles in agricultural and forestry production as well as in plant tolerance to environmental stresses. Tetraploid black locust (Robinia pseudoacacia ...

    Authors: Qiuxiang Luo, Mu Peng, Xiuli Zhang, Pei Lei, Ximei Ji, Wahsoon Chow, Fanjuan Meng and Guanyu Sun
    Citation: BMC Genomics 2017 18:648
    Content type: Research article Published on:

  10. The JASMONATE-ZIM DOMAIN (JAZ) repressor family proteins are jasmonate co-receptors and transcriptional repressor in jasmonic acid (JA) signaling pathway, and they play important roles in regulating the growth...

    Authors: Yukun Wang, Linyi Qiao, Jianfang Bai, Peng Wang, Wenjing Duan, Shaohua Yuan, Guoliang Yuan, Fengting Zhang, Liping Zhang and Changping Zhao
    Citation: BMC Genomics 2017 18:152
    Content type: Research article Published on:

  12. Sexual reproduction is a core biological function that is conserved throughout eukaryotic evolution, yet breeding systems are extremely variable. Genome-wide comparative studies can be effectively used to iden...

    Authors: Brian D Eads, John K Colbourne, Elizabeth Bohuski and Justen Andrews
    Citation: BMC Genomics 2007 8:464
    Content type: Research article Published on:

  13. Dependence on marine natural resources threatens the sustainability of Atlantic salmon aquaculture. In the present study, Atlantic salmon fed for 14 weeks with an experimental diet based on animal by-products ...

    Authors: Albert Caballero-Solares, Xi Xue, Christopher C. Parrish, Maryam Beheshti Foroutani, Richard G. Taylor and Matthew L. Rise
    Citation: BMC Genomics 2018 19:796
    Content type: Research article Published on:

  14. We have studied alterations of gene expression associated with naturally-occurring early life stage mortality (M74) in Baltic salmon using a cDNA microarray and real time PCR. M74-affected fry have several typ...

    Authors: Kristiina AM Vuori, Heikki Koskinen, Aleksei Krasnov, Paula Koivumäki, Sergey Afanasyev, Pekka J Vuorinen and Mikko Nikinmaa
    Citation: BMC Genomics 2006 7:56
    Content type: Research article Published on:

  15. The sucrose nonfermenting-1-related protein kinase 2 (SnRK2) plays a crucial role in responses to diverse biotic/abiotic stresses. Currently, there are reports on these genes in Haynaldia villosa, a diploid wild ...

    Authors: Jia Liu, Luyang Wei, Yirong Wu, Zongkuan Wang, Haiyan Wang, Jin Xiao, Xiue Wang and Li Sun
    Citation: BMC Genomics 2024 25:209
    Content type: Research Published on:

  16. Phytophthora sojae is the primary pathogen of soybeans that are grown on poorly drained soils. Race-specific resistance to P. sojae in soybean is gene-for-gene, although in many areas of the US and worldwide ther...

    Authors: Hehe Wang, Asela Wijeratne, Saranga Wijeratne, Sungwoo Lee, Christopher G Taylor, Steven K St Martin, Leah McHale and Anne E Dorrance
    Citation: BMC Genomics 2012 13:428
    Content type: Research article Published on:

  17. Atherosclerosis is a heterogeneously distributed disease of arteries in which the endothelium plays an important central role. Spatial transcriptome profiling of endothelium in pre-lesional arteries has demons...

    Authors: Yi-Zhou Jiang, Elisabetta Manduchi, Christian J. Stoeckert Jr and Peter F. Davies
    Citation: BMC Genomics 2015 16:506
    Content type: Research article Published on:

  18. Switchgrass (Panicum virgatum L.) is a warm-season perennial (C4) grass identified as an important biofuel crop in the United States. It is well adapted to the marginal environment where heat and moisture stre...

    Authors: Vasudevan Ayyappan, Venkateswara R. Sripathi, Shaojun Xie, Malay C. Saha, Rita Hayford, Desalegn D. Serba, Mayavan Subramani, Jyothi Thimmapuram, Antonette Todd and Venu Kal Kalavacharla
    Citation: BMC Genomics 2024 25:223
    Content type: Research Published on:

  19. LEF1/TCF transcription factors and their activator β-catenin are effectors of the canonical Wnt pathway. Although Wnt/β-catenin signaling has been implicated in neurodegenerative and psychiatric disorders, its...

    Authors: Marta B Wisniewska, Andrzej Nagalski, Michal Dabrowski, Katarzyna Misztal and Jacek Kuznicki
    Citation: BMC Genomics 2012 13:635
    Content type: Research article Published on:

  20. 4-Hydroxy-tamoxifen (4OHT) triggers Cre-mediated K-Ras removal in [H-Ras-/-;N-Ras-/-;K-Raslox/lox;RERTert/ert] fibroblasts, generating growth-arrested “Rasless” MEFs which are able to recover their proliferative ...

    Authors: Sami S Azrak, Alicia Ginel-Picardo, Matthias Drosten, Mariano Barbacid and Eugenio Santos
    Citation: BMC Genomics 2013 14:731
    Content type: Research article Published on:

  21. We use an approach based on Factor Analysis to analyze datasets generated for transcriptional profiling. The method groups samples into biologically relevant categories, and enables the identification of genes...

    Authors: Juan Jose Lozano, Marta Soler, Raquel Bermudo, David Abia, Pedro L Fernandez, Timothy M Thomson and Angel R Ortiz
    Citation: BMC Genomics 2005 6:109
    Content type: Research article Published on:

  22. Phagocytosis plays a major role in the defense of higher organisms against microbial infection and provides also the basis for antigen processing in the immune response. Cells of the model organism Dictyostelium ...

    Authors: Alessio Sillo, Gareth Bloomfield, Alessandra Balest, Alessandra Balbo, Barbara Pergolizzi, Barbara Peracino, Jason Skelton, Alasdair Ivens and Salvatore Bozzaro
    Citation: BMC Genomics 2008 9:291
    Content type: Research article Published on:

  23. The airway epithelial cell plays a central role in coordinating the pulmonary response to injury and inflammation. Here, transforming growth factor-β (TGFβ) activates gene expression programs to induce stem ce...

    Authors: Bing Tian, Xueling Li, Mridul Kalita, Steven G. Widen, Jun Yang, Suresh K. Bhavnani, Bryant Dang, Andrzej Kudlicki, Mala Sinha, Fanping Kong, Thomas G. Wood, Bruce A. Luxon and Allan R. Brasier
    Citation: BMC Genomics 2015 16:529
    Content type: Research article Published on:

  24. Despite extensive efforts to discover transcription factors and their binding sites in the human malaria parasite Plasmodium falciparum, only a few transcription factor binding motifs have been experimentally val...

    Authors: Elena Y Harris, Nadia Ponts, Karine G Le Roch and Stefano Lonardi
    Citation: BMC Genomics 2011 12:601
    Content type: Methodology article Published on:

  25. The soilborne fungus, Verticillium dahliae, causes Verticillium wilt disease in plants. Verticillium wilt is difficult to control since V. dahliae is capable of persisting in the soil for 10 to 15 years as melani...

    Authors: Dechassa Duressa, Amy Anchieta, Dongquan Chen, Anna Klimes, Maria D Garcia-Pedrajas, Katherine F Dobinson and Steven J Klosterman
    Citation: BMC Genomics 2013 14:607
    Content type: Research article Published on:

  26. African swine fever (ASF) is a lethal hemorrhagic disease affecting domestic pigs resulting in up to 100% mortality rates caused by the ASF virus (ASFV). The locally-adapted pigs in South-western Kenya have be...

    Authors: Eunice Magoma Machuka, John Juma, Anne Wangari Thairu Muigai, Joshua Oluoch Amimo, Roger Pelle and Edward Okoth Abworo
    Citation: BMC Genomics 2022 23:522
    Content type: Research Published on:

  27. In flowering plants, the male gametophyte (pollen) is one of the most vulnerable cells to temperature stress. In Arabidopsis thaliana, a pollen-specific Cyclic Nucleotide-Gated cation Channel 16 (cngc16), is requ...

    Authors: Maryam Rahmati Ishka, Elizabeth Brown, Chrystle Weigand, Richard L. Tillett, Karen A. Schlauch, Gad Miller and Jeffrey F. Harper
    Citation: BMC Genomics 2018 19:549
    Content type: Research article Published on:

  28. Traumatic brain injury (TBI) results in irreversible damage at the site of impact and initiates cellular and molecular processes that lead to secondary neural injury in the surrounding tissue. We used microarr...

    Authors: Todd E White, Gregory D Ford, Monique C Surles-Zeigler, Alicia S Gates, Michelle C LaPlaca and Byron D Ford
    Citation: BMC Genomics 2013 14:282
    Content type: Research article Published on:

  29. Abiotic stress causes disturbances in the cellular homeostasis. Re-adjustment of balance in carbon, nitrogen and phosphorus metabolism therefore plays a central role in stress adaptation. However, it is curren...

    Authors: Urte Schlüter, Christian Colmsee, Uwe Scholz, Andrea Bräutigam, Andreas PM Weber, Nina Zellerhoff, Marcel Bucher, Holger Fahnenstich and Uwe Sonnewald
    Citation: BMC Genomics 2013 14:442
    Content type: Research article Published on:

  30. Over the course of its intraerythrocytic developmental cycle (IDC), the malaria parasite Plasmodium falciparum tightly orchestrates the rise and fall of transcript levels for hundreds of genes. Considerable debat...

    Authors: Ragini Rai, Lei Zhu, Haifen Chen, Archana Patkar Gupta, Siu Kwan Sze, Jie Zheng, Christiane Ruedl, Zbynek Bozdech and Mark Featherstone
    Citation: BMC Genomics 2014 15:959
    Content type: Research article Published on:

  31. The intramuscular fat content (IMF) refers to the amount of fat within muscles, including the sum of phospholipids mainly found in cell membranes, triglycerides and cholesterol, and is determined both by hyper...

    Authors: Yuding Wang, Cai Ma, Yi Sun, Yi Li, Li Kang and Yunliang Jiang
    Citation: BMC Genomics 2017 18:780
    Content type: Research article Published on:

  32. Cowpea (Vigna unguiculata (L.) Walp.) is the most important food and forage legume in the semi-arid tropics of sub-Saharan Africa where approximately 80% of worldwide production takes place primarily on low-input...

    Authors: Vikram A. Misra, Yu Wang and Michael P. Timko
    Citation: BMC Genomics 2017 18:898
    Content type: Research article Published on:

  33. Overexpression of the Cut homeobox 1 gene, CUX1, inverselycorrelates with patient survival in breast cancers. Cell-based assays andmolecular studies have revealed that transcriptional regulation byCUX1 involves m...

    Authors: Charles Vadnais, Arif A Awan, Ryoko Harada, Pier-Luc Clermont, Lam Leduy, Ginette Bérubé and Alain Nepveu
    Citation: BMC Genomics 2013 14:258
    Content type: Research article Published on:

  34. We have made use of publicly available gene expression data to identify transcription factors and transcriptional modules (regulons) associated with leaf development in Populus. Different tissue types were compar...

    Authors: Nathaniel Robert Street, Andreas Sjödin, Max Bylesjö, Petter Gustafsson, Johan Trygg and Stefan Jansson
    Citation: BMC Genomics 2008 9:589
    Content type: Research article Published on:

  35. The Manila clam Ruditapesphilippinarum is one of the most economically important marine shellfish. However, the molecular mechanisms of early development in Manila clams are largely unknown. In this study, we col...

    Authors: Yanming Zhang, Hongtao Nie, Zhihui Yin and Xiwu Yan
    Citation: BMC Genomics 2022 23:676
    Content type: Research Published on:

  36. The acquisition of multidrug resistance by Plasmodium falciparum underscores the need to understand the underlying molecular mechanisms so as to counter their impact on malaria control. For the many antimalarials...

    Authors: Sophie H. Adjalley, Daniel Scanfeld, Elyse Kozlowski, Manuel Llinás and David A. Fidock
    Citation: BMC Genomics 2015 16:1090
    Content type: Research article Published on:

  37. Since its discovery more than 100 years ago, potato (Solanum tuberosum) tuber cold-induced sweetening (CIS) has been extensively investigated. Several carbohydrate-associated genes would seem to be involved in th...

    Authors: Paolo Bagnaresi, Anna Moschella, Ottavio Beretta, Federico Vitulli, Paolo Ranalli and Pierdomenico Perata
    Citation: BMC Genomics 2008 9:176
    Content type: Research article Published on:

  38. Epigenetic changes such as cytosine (CpG) DNA methylations regulate gene expression patterns in response to environmental cues including infections. Microbial infections induce DNA methylations that play a pot...

    Authors: Basavaraj Sajjanar, Nares Trakooljul, Klaus Wimmers and Siriluck Ponsuksili
    Citation: BMC Genomics 2019 20:623
    Content type: Research article Published on:

  39. Root morphology is known to be affected by light quality, quantity and direction. Light signal is perceived at the shoot, translocated to roots through vasculature and further modulates the root development. P...

    Authors: Sony Kumari, Sandeep Yadav, Debadutta Patra, Sharmila Singh, Ananda K. Sarkar and Kishore C. S. Panigrahi
    Citation: BMC Genomics 2019 20:596
    Content type: Research article Published on:

  41. Water stress during grain filling has a marked effect on grain yield, leading to a reduced endosperm cell number and thus sink capacity to accumulate dry matter. The bread wheat cultivar Chinese Spring (CS), a...

    Authors: Alessio Aprile, Anna M Mastrangelo, Anna M De Leonardis, Gabor Galiba, Enrica Roncaglia, Francesco Ferrari, Luigi De Bellis, Luana Turchi, Giovanni Giuliano and Luigi Cattivelli
    Citation: BMC Genomics 2009 10:279
    Content type: Research article Published on:

  42. The human malaria parasite Plasmodium falciparum has a complex and multi-stage life cycle that requires extensive and precise gene regulation to allow invasion and hijacking of host cells, transmission, and immun...

    Authors: Kate M Broadbent, Jill C Broadbent, Ulf Ribacke, Dyann Wirth, John L Rinn and Pardis C Sabeti
    Citation: BMC Genomics 2015 16:454
    Content type: Research article Published on:

  43. Most fungi, including entomopathogenic fungi, have two different conidiation patterns, normal and microcycle conidiation, under different culture conditions, eg, in media containing different nutrients. Howeve...

    Authors: Zhenglong Wang, Kai Jin and Yuxian Xia
    Citation: BMC Genomics 2016 17:586
    Content type: Research article Published on:

  44. To increase the Zn level in shoots, AtHMA4 was ectopically expressed in tomato under the constitutive CaMV 35S promoter. However, the Zn concentration in the shoots of transgenic plants failed to increase at all ...

    Authors: Maria Kendziorek, Maria Klimecka, Anna Barabasz, Sören Borg, Justyna Rudzka, Paweł Szczęsny and Danuta Maria Antosiewicz
    Citation: BMC Genomics 2016 17:625
    Content type: Research article Published on:

  45. The immune repertoires of mollusks beyond commercially important organisms such as the pacific oyster Crassostrea gigas or vectors for human pathogens like the bloodfluke planorb Biomphalaria glabrata are underst...

    Authors: Nicholas S. Kron
    Citation: BMC Genomics 2022 23:543
    Content type: Research Published on:

  46. Leaf angle is an important plant architecture trait, affecting plant density, light interception efficiency, photosynthetic rate, and yield. The “smart canopy” model proposes more vertical leaves in the top pl...

    Authors: Martha I. Natukunda, Maria B. Mantilla-Perez, Michelle A. Graham, Peng Liu and Maria G. Salas-Fernandez
    Citation: BMC Genomics 2022 23:95
    Content type: Research Published on:

  47. Transcriptional profiling after herbivore attack reveals, at the molecular level, how plants respond to this type of biotic stress. Comparing herbivore-induced transcriptional responses of plants with differen...

    Authors: Colette Broekgaarden, Erik H Poelman, Greet Steenhuis, Roeland E Voorrips, Marcel Dicke and Ben Vosman
    Citation: BMC Genomics 2007 8:239
    Content type: Research article Published on:

  50. Chemosensory signal transduction guides the behavior of many insects, including Anopheles gambiae, the major vector for human malaria in sub-Saharan Africa. To better understand the molecular basis of mosquito ch...

    Authors: R Jason Pitts, David C Rinker, Patrick L Jones, Antonis Rokas and Laurence J Zwiebel
    Citation: BMC Genomics 2011 12:271
    Content type: Research article Published on:

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