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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Due to the influence of extreme weather, the environment in China’s main cotton-producing areas is prone to drought stress conditions, which affect the growth and development of cotton and lead to a decrease i...

    Authors: Fenglei Sun, Yanlong Yang, Penglong Wang, Jun Ma and Xiongming Du
    Citation: BMC Genomics 2023 24:531
    Content type: Research Published on:

  2. The species of T. harzianum are well known for their biocontrol activity against plant pathogens. However, few studies have been conducted to further our understanding of its role as a biological control agent ag...

    Authors: Andrei Stecca Steindorff, Marcelo Henrique Soller Ramada, Alexandre Siqueira Guedes Coelho, Robert Neil Gerard Miller, Georgios Joannis Pappas Júnior, Cirano José Ulhoa and Eliane Ferreira Noronha
    Citation: BMC Genomics 2014 15:204
    Content type: Research article Published on:

  3. Mitochondria play a key role in the balance of energy and heat production, and therefore the mitochondrial genome is under natural selection by environmental temperature and food availability, since starvation...

    Authors: Barbara Ramos, Daniel González-Acuña, David E. Loyola, Warren E. Johnson, Patricia G. Parker, Melanie Massaro, Gisele P. M. Dantas, Marcelo D. Miranda and Juliana A. Vianna
    Citation: BMC Genomics 2018 19:53
    Content type: Research article Published on:

  4. Cryptocaryon irritans is an obligate parasitic ciliate protozoan that can infect various commercially important mariculture fish species and cause high lethality and economic loss. Current methods of controlling ...

    Authors: Ruanni Chen, Yong Mao, Jun Wang, Min Liu, Ying Qiao, Libing Zheng, Yongquan Su, Qiaozhen Ke and Weiqiang Zheng
    Citation: BMC Genomics 2018 19:192
    Content type: Research article Published on:

  5. Childhood glaucoma (CG) encompasses a heterogeneous group of genetic eye disorders that is responsible for approximately 5% of childhood blindness worldwide. Understanding the molecular aetiology is key to imp...

    Authors: Omayma Al-Saei, Samantha Malka, Nicholas Owen, Elbay Aliyev, Fazulur Rehaman Vempalli, Paulina Ocieczek, Bashayer Al-Khathlan, Khalid Fakhro and Mariya Moosajee
    Citation: BMC Genomics 2024 25:484
    Content type: Research Published on:

  6. iTRAQ is a proteomics technique that uses isobaric tags for relative and absolute quantitation of tryptic peptides. In proteomics experiments, the detection and high confidence annotation of proteins and the s...

    Authors: Joost Lücker, Mario Laszczak, Derek Smith and Steven T Lund
    Citation: BMC Genomics 2009 10:50
    Content type: Research article Published on:

  8. Long noncoding RNAs (lncRNAs) are integral to a plethora of critical cellular biological processes, including the regulation of gene expression, cell differentiation, and the development of tumors and cancers....

    Authors: Guanghui Li, Peihao Bai, Cheng Liang and Jiawei Luo
    Citation: BMC Genomics 2024 25:73
    Content type: Research Published on:

  9. The important cereal crop Sorghum bicolor (L.) Moench biosynthesize and accumulate the defensive compound dhurrin during development. Previous work has suggested multiple roles for the compound including a functi...

    Authors: Lasse Janniche Nielsen, Peter Stuart, Martina Pičmanová, Simon Rasmussen, Carl Erik Olsen, Jesper Harholt, Birger Lindberg Møller and Nanna Bjarnholt
    Citation: BMC Genomics 2016 17:1021
    Content type: Research article Published on:

  10. Control of malaria is threatened by emerging parasite resistance to artemisinin and derivative drug (ART) therapies. The molecular detail of how Plasmodium malaria parasites respond to ART and how this could cont...

    Authors: Philip J. Shaw, Sastra Chaotheing, Pavita Kaewprommal, Jittima Piriyapongsa, Chayaphat Wongsombat, Nattida Suwannakitti, Pongpisid Koonyosying, Chairat Uthaipibull, Yongyuth Yuthavong and Sumalee Kamchonwongpaisan
    Citation: BMC Genomics 2015 16:830
    Content type: Research article Published on:

  11. DNA microarrays have proven powerful for functional genomics studies. Several technologies exist for the generation of whole-genome arrays. It is well documented that 25mer probes directed against different re...

    Authors: Danielle L Leiske, Anis Karimpour-Fard, Patrick S Hume, Benjamin D Fairbanks and Ryan T Gill
    Citation: BMC Genomics 2006 7:72
    Content type: Methodology article Published on:

  12. Excretory/secretory proteins (ESPs) play a major role in parasitic infection as they are present at the host-parasite interface and regulate host immune system. In case of parasitic helminths, transcriptomics ...

    Authors: Gagan Garg and Shoba Ranganathan
    Citation: BMC Genomics 2011 12(Suppl 3):S14
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 12 Supplement 3

  13. An animal model commonly used to investigate pathways and potential therapeutic interventions relevant to abdominal aortic aneurysm (AAA) involves subcutaneous infusion of angiotensin II within the apolipoprot...

    Authors: Catherine Rush, Moses Nyara, Joseph V Moxon, Alexandra Trollope, Bradford Cullen and Jonathan Golledge
    Citation: BMC Genomics 2009 10:298
    Content type: Research article Published on:

  14. Anaplasma phagocytophilum is an intracellular organism in the Order Rickettsiales that infects diverse animal species and is causing an emerging disease in humans, dogs and horses. Different strains have very dif...

    Authors: Basima Al-Khedery, Anna M Lundgren, Snorre Stuen, Erik G Granquist, Ulrike G Munderloh, Curtis M Nelson, A Rick Alleman, Suman M Mahan and Anthony F Barbet
    Citation: BMC Genomics 2012 13:678
    Content type: Research article Published on:

  15. Ajania Poljakov, an Asteraceae family member, grows mostly in Asia’s arid and semi-desert areas and is a significant commercial and decorative plant. Nevertheless, the genus’ classification has been disputed, and...

    Authors: Jingya Yu, Yun Han, Hao Xu, Shuang Han, Xiaoping Li, Yu Niu, Shilong Chen and Faqi Zhang
    Citation: BMC Genomics 2023 24:602
    Content type: Research Published on:

  17. Despite being in the 21st century, the world has still not been able to vanquish the global AIDS epidemic, and the only foreseeable solution seems to be a safe and effective vaccine. Unfortunately, vaccine trials...

    Authors: Hamza Sher, Hafsa Sharif, Tahreem Zaheer, Sarmad Ahmad Khan, Amjad Ali, Hasnain Javed and Aneela Javed
    Citation: BMC Genomics 2023 24:276
    Content type: Research Published on:

  18. In recent years, the genus Pestalotiopsis is receiving increasing attention, not only because of its economic impact as a plant pathogen but also as a commonly isolated endophyte which is an important source of b...

    Authors: Xiuna Wang, Xiaoling Zhang, Ling Liu, Meichun Xiang, Wenzhao Wang, Xiang Sun, Yongsheng Che, Liangdong Guo, Gang Liu, Liyun Guo, Chengshu Wang, Wen-Bing Yin, Marc Stadler, Xinyu Zhang and Xingzhong Liu
    Citation: BMC Genomics 2015 16:28
    Content type: Research article Published on:

  19. Secondary structure interactions within introns have been shown to be essential for efficient splicing of several yeast genes. The nature of these base-pairing interactions and their effect on splicing efficie...

    Authors: Sanja Rogic, Ben Montpetit, Holger H Hoos, Alan K Mackworth, BF Francis Ouellette and Philip Hieter
    Citation: BMC Genomics 2008 9:355
    Content type: Research article Published on:

  20. Gastric cancer (GC) is one of the most common malignant tumors worldwide. Nevertheless, GC still lacks effective diagnosed and monitoring method and treating targets. This study used multi omics data to explor...

    Authors: Jianing Yan, Xuan Yu, Qier Li, Min Miao and Yongfu Shao
    Citation: BMC Genomics 2024 25:319
    Content type: Research Published on:

  21. The toxicity of manufactured fumed silica nanoparticles (NPs) remains poorly investigated compared to that of crystalline silica NPs, which have been associated with lung diseases after inhalation. Amorphous s...

    Authors: Cédric Pisani, Jean-Charles Gaillard, Virginie Nouvel, Michaël Odorico, Jean Armengaud and Odette Prat
    Citation: BMC Genomics 2015 16:315
    Content type: Research article Published on:

  22. Propionibacterium freudenreichii is an Actinobacterium widely used in the dairy industry as a ripening culture for Swiss-type cheeses, for vitamin B12 production and some strains displ...

    Authors: Flavia Figueira Aburjaile, Marine Rohmer, Hugues Parrinello, Marie-Bernadette Maillard, Eric Beaucher, Gwénaële Henry, Aurélie Nicolas, Marie-Noëlle Madec, Anne Thierry, Sandrine Parayre, Stéphanie-Marie Deutsch, Muriel Cocaign-Bousquet, Anderson Miyoshi, Vasco Azevedo, Yves Le Loir and Hélène Falentin
    Citation: BMC Genomics 2016 17:1007
    Content type: Research article Published on:

  23. Flammulina velutipes has been recognized as a useful basidiomycete with nutritional and medicinal values. Ergosterol, one of the main sterols of F. velutipes is an important precursor of novel anticancer and anti...

    Authors: Ruihong Wang, Pengda Ma, Chen Li, Lingang Xiao, Zongsuo Liang and Juane Dong
    Citation: BMC Genomics 2019 20:999
    Content type: Research article Published on:

  24. Both growth and nutritional traits are important economic traits of Crassostrea gigas (C. gigas) in industry. But few work has been done to study the genetic architecture of nutritional traits of the oyster. In t...

    Authors: Chunyan Li, Jinpeng Wang, Kai Song, Jie Meng, Fei Xu, Li Li and Guofan Zhang
    Citation: BMC Genomics 2018 19:626
    Content type: Research article Published on:

  25. Alteromonas is a genus of marine bacteria that is very easy to isolate and grow in the laboratory. There are genomes available of the species Alteromonas macleodii from different locations around the world and an...

    Authors: Mario López-Pérez, Aitor Gonzaga, Elena P Ivanova and Francisco Rodriguez-Valera
    Citation: BMC Genomics 2014 15:483
    Content type: Research article Published on:

  27. Hong Kong catfish (Clarias fuscus) is an ecologically and economically important species that is widely distributed in freshwater regions of southern China. Hong Kong catfish has significant sexual growth dimorph...

    Authors: Chang-Xu Tian, Xing-Hua Lin, Da-Yan Zhou, Yu Chen, Yi-Jun Shen, Ming-Hui Ye, Cun-Yu Duan, Yu-Lei Zhang, Bin-Lan Yang, Si-Ping Deng, Chun-Hua Zhu and Guang-Li Li
    Citation: BMC Genomics 2023 24:291
    Content type: Research Published on:

  28. Leishmania infantum is the protozoan parasite responsible for zoonotic visceral leishmaniasis in the Mediterranean basin. A recent outbreak in humans has been reported in this area. Th...

    Authors: Pedro J. Alcolea, Ana Alonso, María A. Degayón, Mercedes Moreno-Paz, Maribel Jiménez, Ricardo Molina and Vicente Larraga
    Citation: BMC Genomics 2016 17:375
    Content type: Research article Published on:

  29. The bacterial pathogen Mycoplasma synoviae can cause subclinical respiratory disease, synovitis, airsacculitis and reproductive tract disease in poultry and is a major cause of economic loss worldwide. The M. syn...

    Authors: Ling Zhu, Muhammad A. Shahid, John Markham, Glenn F. Browning, Amir H. Noormohammadi and Marc S. Marenda
    Citation: BMC Genomics 2018 19:117
    Content type: Research article Published on:

  30. We have identified molecules that exhibit synthetic lethality in cells with loss of the neurofibromin 1 (NF1) tumor suppressor gene. However, recognizing tumors that have inactivation of the NF1 tumor suppressor ...

    Authors: Gregory P. Way, Robert J. Allaway, Stephanie J. Bouley, Camilo E. Fadul, Yolanda Sanchez and Casey S. Greene
    Citation: BMC Genomics 2017 18:127
    Content type: Research article Published on:

  31. The Blau syndrome (MIM 186580), an autosomal dominant granulomatous disease, was previously mapped to chromosome 16p12-q21. However, inconsistent physical maps of the region and consequently an unknown order o...

    Authors: Xiaoju Wang, Helena Kuivaniemi, Gina Bonavita, Charlene J Williams and Gerard Tromp
    Citation: BMC Genomics 2002 3:24
    Content type: Research article Published on:

  33. RNA-Seq measures gene expression by counting sequence reads belonging to unique cDNA fragments. Molecular barcodes commonly in the form of random nucleotides were recently introduced to improve gene expression...

    Authors: Billy T. Lau and Hanlee P. Ji
    Citation: BMC Genomics 2017 18:745
    Content type: Methodology article Published on:

  34. Jatropha curcas L. is an important non-edible oilseed crop with promising future in biodiesel production. However, factors like oil yield, oil composition, toxic compounds in oil cake, pests and diseases limit it...

    Authors: Purushothaman Natarajan and Madasamy Parani
    Citation: BMC Genomics 2011 12:191
    Content type: Research article Published on:

  35. Cancer is a life-threatening disease in humans; yet, cancer genes are frequently reported to be under positive selection. This suggests an evolutionary-genetic paradox in which cancer evolves as a secondary pr...

    Authors: Langyu Gu, Canwei Xia, Shiyu Yang and Guofen Yang
    Citation: BMC Genomics 2023 24:215
    Content type: Research Published on:

  37. The genus Sophora (Fabaceae) includes medicinal plants that have been used in East Asian countries since antiquity. Sophora flavescens is a perennial herb indigenous to China, India, Japan, Korea, and Russia. Its...

    Authors: Yang Jae Kang, Halim Park, Yejin Lee, Sanghwa Yoon and Myounghai Kwak
    Citation: BMC Genomics 2023 24:475
    Content type: Research Published on:

  38. The genetic diversity in Australian populations of Xanthomonas species associated with bacterial leaf spot in tomato, capsicum and chilli were compared to worldwide bacterial populations. The aim of this study wa...

    Authors: R. Roach, R. Mann, C. G. Gambley, T. Chapman, R. G. Shivas and B. Rodoni
    Citation: BMC Genomics 2019 20:310
    Content type: Research article Published on:

  39. Fatty liver is a high incidence of perinatal disease in dairy cows caused by negative energy balance, which seriously threatens the postpartum health and milk production. It has been reported that lysine acety...

    Authors: Zhang Le-tian, Hu Cheng-zhang, Zhang Xuan, Qin Zhang, Yan Zhen-gui, Wei Qing-qing, Wang Sheng-xuan, Xu Zhong-jin, Li Ran-ran, Liu Ting-jun, Su Zhong-qu, Wang Zhong-hua and Shi Ke-rong
    Citation: BMC Genomics 2020 21:435
    Content type: Research article Published on:

  41. Acoustic or hydrodynamic shearing, sonication and enzymatic digestion are used to fragment DNA. However, these methods have several disadvantages, such as DNA damage, difficulties in fragmentation control, irr...

    Authors: Daria Krefft, Aliaksei Papkov, Maciej Prusinowski, Agnieszka Zylicz-Stachula and Piotr M. Skowron
    Citation: BMC Genomics 2018 19:361
    Content type: Methodology article Published on:

  42. Long-term exposure to elevated levels of free fatty acids (FFAs) is deleterious for beta-cell function and may contribute to development of type 2 diabetes mellitus (T2DM). Whereas mechanisms of impaired gluco...

    Authors: Ernest Sargsyan, Jing Cen, Kirsten Roomp, Reinhard Schneider and Peter Bergsten
    Citation: BMC Genomics 2018 19:629
    Content type: Research article Published on:

  43. The aim of this study was to use transcriptome RNA-Seq data from longissimus thoracis muscle of uncastrated Nelore males to identify hub genes based on co-expression network obtained from differentially expressed...

    Authors: Danielly Beraldo dos Santos Silva, Larissa Fernanda Simielli Fonseca, Daniel Guariz Pinheiro, Maria Malane Magalhães Muniz, Ana Fabrícia Braga Magalhães, Fernando Baldi, Jesus Aparecido Ferro, Luis Artur Loyola Chardulo and Lucia Galvão de Albuquerque
    Citation: BMC Genomics 2019 20:520
    Content type: Research article Published on:

  44. Fatty acids composition in poultry muscle is directly related to its tenderness, flavour, and juiciness, whereas its genetic mechanisms have not been elucidated. In this study, the genetic structure and key re...

    Authors: Shengxin Fan, Pengtao Yuan, Shuaihao Li, Hongtai Li, Bin Zhai, Yuanfang Li, Hongyuan Zhang, Jinxin Gu, Hong Li, Yadong Tian, Xiangtao Kang, Yanhua Zhang and Guoxi Li
    Citation: BMC Genomics 2023 24:434
    Content type: Research Published on:

  45. Establishing genomic resources for closely related species will provide comparative insights that are crucial for understanding diversity and variability at multiple levels of biological organization. We devel...

    Authors: Srikrishna Putta, Jeramiah J Smith, John A Walker, Mathieu Rondet, David W Weisrock, James Monaghan, Amy K Samuels, Kevin Kump, David C King, Nicholas J Maness, Bianca Habermann, Elly Tanaka, Susan V Bryant, David M Gardiner, David M Parichy and S Randal Voss
    Citation: BMC Genomics 2004 5:54
    Content type: Research article Published on:

  46. Aging-related kidney diseases are a major health concern. Currently, models to study renal aging are lacking. Due to a reduced life-span progeroid models hold the promise to facilitate aging studies and allow ...

    Authors: Bernhard Schermer, Valerie Bartels, Peter Frommolt, Bianca Habermann, Fabian Braun, Joachim L Schultze, Marianne Roodbergen, Jan HJ Hoeijmakers, Björn Schumacher, Peter Nürnberg, Martijn ET Dollé, Thomas Benzing, Roman-Ulrich Müller and Christine E Kurschat
    Citation: BMC Genomics 2013 14:559
    Content type: Research article Published on:

  47. Riemerella anatipestifer infection is a contagious disease that has resulted in major economic losses in the duck industry worldwide. This study attempted to characterize CRISPR-Cas sy...

    Authors: De-Kang Zhu, Xue-Qin Yang, Yang He, Wang-Shu Zhou, Xiao-Heng Song, Jiang-Bo Wang, Yu Zhang, Ma-Feng Liu, Ming-Shu Wang, Ren-Yong Jia, Shun Chen, Kun-Feng Sun, Qiao Yang, Ying Wu, Xiao-Yue Chen and An-Chun Cheng
    Citation: BMC Genomics 2016 17:689
    Content type: Research article Published on:

  50. A comprehensive evaluation of the -omic profiles of venom is important for understanding the potential function and evolution of snake venom. Here, we conducted an integrated multi-omics-analysis to unveil the...

    Authors: Hong-Yan Zhao, Lin Wen, Yu-Feng Miao, Yu Du, Yan Sun, Yin Yin, Chi-Xian Lin, Long-Hui Lin, Xiang Ji and Jian-Fang Gao
    Citation: BMC Genomics 2021 22:520
    Content type: Research article Published on:

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