Skip to main content

Articles

6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 23 of 128

  1. Long non-coding RNAs (lncRNAs) are involved in variable cleavage, transcriptional interference, regulation of DNA methylation and protein modification. However, the regulation of lncRNAs in plant somatic embry...

    Authors: Yan Chen, Xue Li, Liyao Su, Xu Chen, Shuting Zhang, Xiaoping Xu, Zihao Zhang, Yukun Chen, Xu XuHan, Yuling Lin and Zhongxiong Lai
    Citation: BMC Genomics 2018 19:805
    Content type: Research article Published on:

  2. The pattern of gene transcripts in the yeast Saccharomyces cerevisiae is strongly affected by the presence of glucose. An increased activity of protein kinase A (PKA), triggered by a rise in the intracellular con...

    Authors: Daniela Livas, Marinka JH Almering, Jean-Marc Daran, Jack T Pronk and Juana M Gancedo
    Citation: BMC Genomics 2011 12:405
    Content type: Research article Published on:

  3. Pre-harvest sprouting (PHS) is one of the most serious rice production constraints in areas where prolonged rainfall occurs during harvest. However, the molecular mechanisms of transcriptional regulation under...

    Authors: Dong Liu, Mingyang Zeng, Yan Wu, Yanli Du, Jianming Liu, Shaoqiang Luo and Yongjun Zeng
    Citation: BMC Genomics 2022 23:771
    Content type: Research Published on:

  4. Homeostasis of ions and water is important for the maintenance of cellular functions. The regulation of the homeostasis is particularly important in euryhaline fish that migrate between freshwater (FW) and sea...

    Authors: Keng Po Lai, Jing-Woei Li, Je Gu, Ting-Fung Chan, William Ka Fai Tse and Chris Kong Chu Wong
    Citation: BMC Genomics 2015 16:1072
    Content type: Research article Published on:

  5. Saccharomyces cerevisiae (Baker's yeast) is found in diverse ecological niches and is characterized by high adaptive potential under challenging environments. In spite of recent advances on the study of yeast gen...

    Authors: Laura Carreto, Maria F Eiriz, Inês Domingues, Dorit Schuller, Gabriela R Moura and Manuel AS Santos
    Citation: BMC Genomics 2011 12:201
    Content type: Research article Published on:

  8. Chromatin accessibility profiling assays such as ATAC-seq and DNase1-seq offer the opportunity to rapidly characterize the regulatory state of the genome at a single nucleotide resolution. Optimization of mole...

    Authors: Thomas J. F. Pranzatelli, Drew G. Michael and John A. Chiorini
    Citation: BMC Genomics 2018 19:563
    Content type: Methodology article Published on:

    The Correction to this article has been published in BMC Genomics 2019 20:44

  9. Transcription factors (TF) play a crucial role in regulating gene expression and are fit to regulate diverse cellular processes by interacting with other proteins. A TF named calmodulin binding transcription a...

    Authors: Neha Pandey, Alok Ranjan, Poonam Pant, Rajiv K Tripathi, Farha Ateek, Haushilla P Pandey, Uday V Patre and Samir V Sawant
    Citation: BMC Genomics 2013 14:216
    Content type: Research article Published on:

  10. Despite sexual development being ubiquitous to vertebrates, the molecular mechanisms underpinning this fundamental transition remain largely undocumented in many organisms. We designed a time course experiment...

    Authors: Amin R. Mohamed, Marina Naval-Sanchez, Moira Menzies, Bradley Evans, Harry King, Antonio Reverter and James W. Kijas
    Citation: BMC Genomics 2022 23:413
    Content type: Research Published on:

  11. Temperature stress is a major environmental factor affecting not only plant growth and development, but also fruit postharvest life and quality. MicroRNAs (miRNAs) are a class of non-coding small RNAs that pla...

    Authors: Hong Zhu, Yu Zhang, Ruifang Tang, Hongxia Qu, Xuewu Duan and Yueming Jiang
    Citation: BMC Genomics 2019 20:33
    Content type: Research article Published on:

  12. The Manila clam (Ruditapes philippinarum) is a cultured bivalve with worldwide commercial importance, and diseases cause high economic losses. For this reason, interest in the immune genes in this species has rec...

    Authors: Rebeca Moreira, Massimo Milan, Pablo Balseiro, Alejandro Romero, Massimiliano Babbucci, Antonio Figueras, Luca Bargelloni and Beatriz Novoa
    Citation: BMC Genomics 2014 15:267
    Content type: Research article Published on:

  13. Recent developments in DNA microarray technology led to a variety of open and closed devices and systems including high and low density microarrays for high-throughput screening applications as well as microar...

    Authors: Susann Schüler, Ingrid Wenz, B Wiederanders, P Slickers and R Ehricht
    Citation: BMC Genomics 2006 7:144
    Content type: Methodology article Published on:

  14. The presence of Bacillus in very diverse environments reflects the versatile metabolic capabilities of a widely distributed genus. Traditional phylogenetic analysis based on limited gene sampling is not adequate ...

    Authors: Luis David Alcaraz, Gabriel Moreno-Hagelsieb, Luis E Eguiarte, Valeria Souza, Luis Herrera-Estrella and Gabriela Olmedo
    Citation: BMC Genomics 2010 11:332
    Content type: Research article Published on:

  15. We performed an analysis of the transcriptome during the blastogenesis of the chordate Botryllus schlosseri, focusing in particular on genes involved in cell death by apoptosis. The tunicate B. schlosseri is an a...

    Authors: Davide Campagna, Fabio Gasparini, Nicola Franchi, Nicola Vitulo, Francesca Ballin, Lucia Manni, Giorgio Valle and Loriano Ballarin
    Citation: BMC Genomics 2016 17:275
    Content type: Research article Published on:

  16. Aneuploidy, a karyotype deviating from multiples of a haploid chromosome set, affects the physiology of eukaryotes. In humans, aneuploidy is linked to pathological defects such as developmental abnormalities, ...

    Authors: Milena Dürrbaum, Anastasia Yurievna Kuznetsova, Verena Passerini, Silvia Stingele, Gabriele Stoehr and Zuzana Storchová
    Citation: BMC Genomics 2014 15:139
    Content type: Research article Published on:

  17. Stat5 is a latent transcription factor that regulates essential growth and survival functions in normal cells. Constitutive activity of Stat5 and the involvement of its C-terminally truncated variant have been...

    Authors: Tali Eilon and Itamar Barash
    Citation: BMC Genomics 2009 10:231
    Content type: Research article Published on:

  18. Hexaploid wheat is one of the most important cereal crops for human nutrition. Molecular understanding of the biology of the developing grain will assist the improvement of yield and quality traits for differe...

    Authors: Yongfang Wan, Rebecca L Poole, Alison K Huttly, Claudia Toscano-Underwood, Kevin Feeney, Sue Welham, Mike J Gooding, Clare Mills, Keith J Edwards, Peter R Shewry and Rowan AC Mitchell
    Citation: BMC Genomics 2008 9:121
    Content type: Research article Published on:

  19. Fluctuations in external salinity force eukaryotic cells to respond by changes in the gene expression of proteins acting in protective biochemical processes, thus counteracting the changing osmotic pressure. T...

    Authors: Tomaž Vaupotič and Ana Plemenitaš
    Citation: BMC Genomics 2007 8:280
    Content type: Research article Published on:

  20. Translation of the genome sequence of Plasmodium sp. into biologically relevant information relies on high through-put genomics technology which includes transcriptome analysis. However, few studies to date have ...

    Authors: Onguma Natalang, Emmanuel Bischoff, Guillaume Deplaine, Caroline Proux, Marie-Agnès Dillies, Odile Sismeiro, Ghislaine Guigon, Serge Bonnefoy, Jintana Patarapotikul, Odile Mercereau-Puijalon, Jean-Yves Coppée and Peter H David
    Citation: BMC Genomics 2008 9:388
    Content type: Research article Published on:

  21. Previous studies on plant long noncoding RNAs (lncRNAs) lacked consistency and suffered from many factors like heterogeneous data sources and experimental protocols, different plant tissues, inconsistent bioin...

    Authors: Yan Zhu, Longxian Chen, Xiangna Hong, Han Shi and Xuan Li
    Citation: BMC Genomics 2022 23(Suppl 4):381
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 4

  22. Trypanosomes undergo extensive developmental changes during their complex life cycle. Crucial among these is the transition between slender and stumpy bloodstream forms and, thereafter, the differentiation fro...

    Authors: Sarah Kabani, Katelyn Fenn, Alan Ross, Al Ivens, Terry K Smith, Peter Ghazal and Keith Matthews
    Citation: BMC Genomics 2009 10:427
    Content type: Research article Published on:

  23. Understanding the evolution of the vertebrate pancreas is key to understanding its functions. The chondrichthyes (cartilaginous fish such as sharks and rays) have often been suggested to possess the most ancie...

    Authors: John F Mulley, Adam D Hargreaves, Matthew J Hegarty, R Scott Heller and Martin T Swain
    Citation: BMC Genomics 2014 15:1074
    Content type: Research article Published on:

  24. Although the pattern of lateral organ formation from apical meristems establishes species-specific plant architecture, the positional information that confers cell fate to cells as they transit to the meristem...

    Authors: Anneke Frerichs, Rahere Thoma, Ali Taleb Abdallah, Peter Frommolt, Wolfgang Werr and John William Chandler
    Citation: BMC Genomics 2016 17:855
    Content type: Research article Published on:

  25. Plants encounter pathogenic and non-pathogenic microorganisms on a nearly constant basis. Small RNAs such as siRNAs and miRNAs/milRNAs influence pathogen virulence and host defense responses. We exploited the ...

    Authors: Matt Hunt, Sagnik Banerjee, Priyanka Surana, Meiling Liu, Greg Fuerst, Sandra Mathioni, Blake C. Meyers, Dan Nettleton and Roger P. Wise
    Citation: BMC Genomics 2019 20:610
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2019 20:697

  26. Research on the aryl hydrocarbon receptor (AHR) has largely focused on variations in toxic outcomes resulting from its activation by halogenated aromatic hydrocarbons. But the AHR also plays key roles in regul...

    Authors: Ren X Sun, Lauren C Chong, Trent T Simmons, Kathleen E Houlahan, Stephenie D Prokopec, John D Watson, Ivy D Moffat, Sanna Lensu, Jere Lindén, Christine P'ng, Allan B Okey, Raimo Pohjanvirta and Paul C Boutros
    Citation: BMC Genomics 2014 15:1053
    Content type: Research article Published on:

  27. MicroRNAs (miRNAs) are small non-coding RNAs playing vital roles in regulating posttranscriptional gene expression. Elucidating the expression regulation of miRNAs underlying pig testis development will contri...

    Authors: Haisheng Ding, Min Liu, Changfan Zhou, Xiangbin You, Tao Su, Youbing Yang and Dequan Xu
    Citation: BMC Genomics 2020 21:686
    Content type: Research article Published on:

  28. Anthocyanins determinate the flower color of many plants. Tobacco is a model plant for studying the molecular regulation of flower coloration. We investigated the mechanism underlying flower coloration in toba...

    Authors: Fangchan Jiao, Lu Zhao, Xingfu Wu, Zhongbang Song and Yongping Li
    Citation: BMC Genomics 2020 21:611
    Content type: Research article Published on:

  29. The mammalian brain is divided into distinct regions with structural and neurophysiological differences. As a result, gene expression is likely to vary between regions in relation to their cellular composition...

    Authors: Christine Stansberg, Audun Osland Vik-Mo, Rita Holdhus, Harald Breilid, Boleslaw Srebro, Kjell Petersen, Hugo A Jørgensen, Inge Jonassen and Vidar M Steen
    Citation: BMC Genomics 2007 8:94
    Content type: Research article Published on:

  30. Upon infection of a mammalian host, Bacillus anthracis responds to host cues, and particularly to elevated temperature (37°C) and bicarbonate/CO2 concentrations, with increased expression of virulence factors tha...

    Authors: Andrew T McKenzie, Andrei P Pomerantsev, Inka Sastalla, Craig Martens, Stacy M Ricklefs, Kimmo Virtaneva, Sarah Anzick, Stephen F Porcella and Stephen H Leppla
    Citation: BMC Genomics 2014 15:229
    Content type: Research article Published on:

  31. Olfaction is a versatile sensory mechanism for detecting thousands of volatile odorants. Although molecular basis of odorant signaling is relatively well understood considerable gaps remain in the complete cha...

    Authors: Tsviya Olender, Ifat Keydar, Jayant M. Pinto, Pavlo Tatarskyy, Anna Alkelai, Ming-Shan Chien, Simon Fishilevich, Diego Restrepo, Hiroaki Matsunami, Yoav Gilad and Doron Lancet
    Citation: BMC Genomics 2016 17:619
    Content type: Research article Published on:

  32. We present a computational framework tailored for the modeling of the complex, dynamic relationships that are encountered in splicing regulation. The starting point is whole-genome transcriptomic data from hig...

    Authors: Panagiotis Papasaikas, Arvind Rao, Peter Huggins, Juan Valcarcel and A Javier Lopez
    Citation: BMC Genomics 2015 16(Suppl 10):S7
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 10

  33. There is strong but mostly circumstantial evidence that genetic factors modulate the severity of influenza infection in humans. Using genetically diverse but fully inbred strains of mice it has been shown that...

    Authors: Tatiana Nedelko, Heike Kollmus, Frank Klawonn, Sabine Spijker, Lu Lu, Manuela Heßman, Rudi Alberts, Robert W Williams and Klaus Schughart
    Citation: BMC Genomics 2012 13:411
    Content type: Research article Published on:

  34. The incidence of malignant melanoma has significantly increased over the last decade. Some of these malignancies are susceptible to the growth inhibitory and pro-differentiating effects of all-trans-retinoic acid...

    Authors: Mary Estler, Goran Boskovic, James Denvir, Sarah Miles, Donald A Primerano and Richard M Niles
    Citation: BMC Genomics 2008 9:478
    Content type: Research article Published on:

  35. The packaging of DNA into chromatin regulates transcription from initiation through 3' end processing. One aspect of transcription in which chromatin plays a poorly understood role is the co-transcriptional sp...

    Authors: Grace S Shieh, Chin-Hua Pan, Jia-Hong Wu, Yun-Ju Sun, Chia-Chang Wang, Wei-Chun Hsiao, Chia-Yeh Lin, Luh Tung, Tien-Hsien Chang, Alastair B Fleming, Cory Hillyer, Yi-Chen Lo, Shelley L Berger, Mary Ann Osley and Cheng-Fu Kao
    Citation: BMC Genomics 2011 12:627
    Content type: Research article Published on:

  36. Tomato (Solanum lycopersicum) establishes a beneficial symbiosis with arbuscular mycorrhizal (AM) fungi. The formation of the mycorrhizal association in the roots leads to plant-wide modulation of gene expression...

    Authors: Inès Zouari, Alessandra Salvioli, Matteo Chialva, Mara Novero, Laura Miozzi, Gian Carlo Tenore, Paolo Bagnaresi and Paola Bonfante
    Citation: BMC Genomics 2014 15:221
    Content type: Research article Published on:

  37. The ability of animals and their microbiomes to adapt to starvation and then restore homeostasis after refeeding is fundamental to their continued survival and symbiosis. The intestine is the primary site of n...

    Authors: Jayanth Jawahar, Alexander W. McCumber, Colin R. Lickwar, Caroline R. Amoroso, Sol Gomez de la Torre Canny, Sandi Wong, Margaret Morash, James H. Thierer, Steven A. Farber, Brendan J. M. Bohannan, Karen Guillemin and John F. Rawls
    Citation: BMC Genomics 2022 23:225
    Content type: Research Published on:

  38. In recent single-cell -omics studies, both the differential activity of transcription factors regulating cell fate determination and differential genome activation have been tested for utility as descriptors o...

    Authors: Sami Kilpinen, Heidi Heliölä and Kaia Achim
    Citation: BMC Genomics 2023 24:725
    Content type: Research Published on:

  39. Breeding a mare until she is not fertile or even until her death is common in equine industry but the fertility decreases as the mare age increases. Embryo loss due to reduced embryo quality is partly accounta...

    Authors: Emilie Derisoud, Luc Jouneau, Cédric Dubois, Catherine Archilla, Yan Jaszczyszyn, Rachel Legendre, Nathalie Daniel, Nathalie Peynot, Michèle Dahirel, Juliette Auclair-Ronzaud, Laurence Wimel, Véronique Duranthon and Pascale Chavatte-Palmer
    Citation: BMC Genomics 2022 23:443
    Content type: Research Published on:

  40. Modern broiler chickens exhibit very rapid growth and high feed efficiency compared to unselected chicken breeds. The improved production efficiency in modern broiler chickens was achieved by the intensive gen...

    Authors: Byung-Whi Kong, Nicholas Hudson, Dongwon Seo, Seok Lee, Bhuwan Khatri, Kentu Lassiter, Devin Cook, Alissa Piekarski, Sami Dridi, Nicholas Anthony and Walter Bottje
    Citation: BMC Genomics 2017 18:82
    Content type: Research article Published on:

  41. Shigella flexneri is an important human pathogen that has to adapt to the anaerobic environment in the gastrointestinal tract to cause dysentery. To define the influence of anaerobiosis on the virulence of Shigel...

    Authors: Marta Vergara-Irigaray, Maria C Fookes, Nicholas R Thomson and Christoph M Tang
    Citation: BMC Genomics 2014 15:438
    Content type: Research article Published on:

  42. The invertebrate immune system comprises physiological mechanisms, physical barriers and also behavioral responses. It is generally related to the vertebrate innate immune system and widely believed to provide...

    Authors: Rania Nakad, L. Basten Snoek, Wentao Yang, Sunna Ellendt, Franziska Schneider, Timm G. Mohr, Lone Rösingh, Anna C. Masche, Philip C. Rosenstiel, Katja Dierking, Jan E. Kammenga and Hinrich Schulenburg
    Citation: BMC Genomics 2016 17:280
    Content type: Research article Published on:

  43. The laying hen model of spontaneous epithelial ovarian cancer (EOC) is unique in that it is the only model that enables observations of early events in disease progression and is therefore also uniquely suited...

    Authors: Karen H Hales, Sheree C Speckman, Nawneet K Kurrey and Dale B Hales
    Citation: BMC Genomics 2014 15:709
    Content type: Research article Published on:

  44. Chilling injury of mung bean (Vigna radiata (L.)) during the blooming and podding stages is a major agricultural threat in Northeast China. Uniconazole (UNZ) can alleviate water deficit stress in soybean and wate...

    Authors: Hanqiao Hu, Naijie Feng, Xuefeng Shen, Liming Zhao and Dianfeng Zheng
    Citation: BMC Genomics 2022 23:205
    Content type: Research Published on:

  45. Seashore paspalum (Paspalum vaginatum), a halophytic warm-seasoned perennial grass, is tolerant of many environmental stresses, especially salt stress. To investigate molecular mechanisms underlying salinity tole...

    Authors: Peipei Wu, Steven Cogill, Yijian Qiu, Zhigang Li, Man Zhou, Qian Hu, Zhihui Chang, Rooksana E. Noorai, Xiaoxia Xia, Christopher Saski, Paul Raymer and Hong Luo
    Citation: BMC Genomics 2020 21:131
    Content type: Research article Published on:

  46. Although the study of gene regulation via the action of specific microRNAs (miRNAs) has experienced a boom in recent years, the analysis of genome-wide interaction networks among miRNAs and respective targeted...

    Authors: Yury O Nunez, Jay M Truitt, Giorgio Gorini, Olga N Ponomareva, Yuri A Blednov, R Adron Harris and R Dayne Mayfield
    Citation: BMC Genomics 2013 14:725
    Content type: Research article Published on:

  47. The success of a biological control agent depends on key traits, particularly reproductive potential, environmental tolerance, and ability to be cultured. These traits can deteriorate rapidly when the biologic...

    Authors: Bishwo N Adhikari, Chin-Yo Lin, Xiaodong Bai, Todd A Ciche, Parwinder S Grewal, Adler R Dillman, John M Chaston, David I Shapiro-Ilan, Anwar L Bilgrami, Randy Gaugler, Paul W Sternberg and Byron J Adams
    Citation: BMC Genomics 2009 10:609
    Content type: Research article Published on:

  48. Here, we investigated the underlying transcriptional-level evidence behind phytochemical differences between two metabolically extreme genotypes of Thymus daenensis. The genotypes ‘Zagheh-11’ (thymol/carvacrol ty...

    Authors: Hosein Ahmadi, Reza Fatahi, Zabihollah Zamani, Majid Shokrpour, Morteza Sheikh-Assadi and Peter Poczai
    Citation: BMC Genomics 2024 25:237
    Content type: Research Published on:

  50. Use of RNA-Seq presents unique benefits in terms of gene expression analysis because of its wide dynamic range and ability to identify functional sequence variants. This technology provides the opportunity to ...

    Authors: James L Chitwood, Gonzalo Rincon, German G Kaiser, Juan F Medrano and Pablo J Ross
    Citation: BMC Genomics 2013 14:350
    Content type: Research article Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • 2022 Citation Impact
    4.4 - 2-year Impact Factor
    4.7 - 5-year Impact Factor
    1.189 - SNIP (Source Normalized Impact per Paper)
    1.107 - SJR (SCImago Journal Rank)

    2023 Speed
    23 days submission to first editorial decision for all manuscripts (Median)
    137 days submission to accept (Median)

    2023 Usage
    7,167,242 downloads
    4,454 Altmetric mentions

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us