Skip to main content

Articles

6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 26 of 128

  1. The discovery of male sterile materials is of great significance for the development of plant fertility research. Wucai (Brassica campestris L. ssp. chinensis var. rosularis Tsen) is a variety of non-heading Chin...

    Authors: Jian Wang, Yitao Yang, Lei Zhang, Shaoxing Wang, Lingyun Yuan, Guohu Chen, Xiaoyan Tang, Jinfeng Hou, Shidong Zhu and Chenggang Wang
    Citation: BMC Genomics 2021 22:654
    Content type: Research Published on:

  2. T-cell activation is an essential step of the immune response and relies on the tightly controlled orchestration of hundreds of genes/proteins, yet the cellular and molecular events underlying this complex pro...

    Authors: Min Wang, Dirk Windgassen and Eleftherios T Papoutsakis
    Citation: BMC Genomics 2008 9:225
    Content type: Research article Published on:

  3. The tropical ascomycete Trichoderma reesei (Hypocrea jecorina) represents one of the most efficient plant cell wall degraders. Regulation of the enzymes required for this process is affected by nutritional signal...

    Authors: Doris Tisch and Monika Schmoll
    Citation: BMC Genomics 2013 14:657
    Content type: Research article Published on:

  4. Many fruits, including watermelon, are proficient in carotenoid accumulation during ripening. While most genes encoding steps in the carotenoid biosynthetic pathway have been cloned, few transcriptional regula...

    Authors: Stefania Grassi, Gabriella Piro, Je Min Lee, Yi Zheng, Zhangjun Fei, Giuseppe Dalessandro, James J Giovannoni and Marcello S Lenucci
    Citation: BMC Genomics 2013 14:781
    Content type: Research article Published on:

  5. We have previously demonstrated that alcohol exposure at early neurulation induces growth retardation, neural tube abnormalities, and alteration of DNA methylation. To explore the global gene expression change...

    Authors: Feng C Zhou, Qianqian Zhao, Yunlong Liu, Charles R Goodlett, Tiebing Liang, Jeanette N McClintick, Howard J Edenberg and Lang Li
    Citation: BMC Genomics 2011 12:124
    Content type: Research article Published on:

  6. The oil yield trait of oil palm is expected to involve multiple genes, environmental influences and interactions. Many of the underlying mechanisms that contribute to oil yield are still poorly understood. In ...

    Authors: Yick Ching Wong, Huey Fang Teh, Katharina Mebus, Tony Eng Keong Ooi, Qi Bin Kwong, Ka Loo Koo, Chuang Kee Ong, Sean Mayes, Fook Tim Chew, David R. Appleton and Harikrishna Kulaveerasingam
    Citation: BMC Genomics 2017 18:470
    Content type: Research article Published on:

  7. In the most general sense, studies involving global analysis of gene expression aim to provide a comprehensive catalog of the components involved in the production of recognizable cellular phenotypes. These st...

    Authors: Roger A Barthelson, Georgina M Lambert, Cheryl Vanier, Ronald M Lynch and David W Galbraith
    Citation: BMC Genomics 2007 8:340
    Content type: Research article Published on:

  8. 'Kuerlexiangli’ (Pyrus sinkiangensis Yu), a native pear of Xinjiang, China, is an important agricultural fruit and primary export to the international market. However, fruit with persistent calyxes affect fruit s...

    Authors: Xiaoxiao Qi, Jun Wu, Lifen Wang, Leiting Li, Yufen Cao, Luming Tian, Xingguang Dong and Shaoling Zhang
    Citation: BMC Genomics 2013 14:727
    Content type: Research article Published on:

  10. Sessile bivalves of the genus Mytilus are suspension feeders relatively tolerant to a wide range of environmental changes, used as sentinels in ecotoxicological investigations and marketed worldwide as seafood. M...

    Authors: Paola Venier, Laura Varotto, Umberto Rosani, Caterina Millino, Barbara Celegato, Filippo Bernante, Gerolamo Lanfranchi, Beatriz Novoa, Philippe Roch, Antonio Figueras and Alberto Pallavicini
    Citation: BMC Genomics 2011 12:69
    Content type: Research article Published on:

  11. Plants grown under shade are exposed to low red/far-red ratio, thereby triggering an array of altered phenotypes called shade avoidance syndrome (SAS). Shade negatively influences plant growth, leading to a re...

    Authors: Nguyen Hoai Nguyen, Benny Jian Rong Sng, Hock Chuan Yeo and In-Cheol Jang
    Citation: BMC Genomics 2021 22:760
    Content type: Research Published on:

  12. Completely sequenced plant genomes provide scope for designing a large number of microsatellite markers, which are useful in various aspects of crop breeding and genetic analysis. With the objective of develop...

    Authors: Swarup Kumar Parida, Vivek Dalal, Ashok Kumar Singh, Nagendra Kumar Singh and Trilochan Mohapatra
    Citation: BMC Genomics 2009 10:140
    Content type: Research article Published on:

  13. Transcriptome and proteome analyses on fruit pulp from the blood orange ‘Zaohong’ and the navel orange ‘twenty-first century’ were performed to study Citrus sinensis quality-related molecular changes during conse...

    Authors: Jian-hui Wang, Jian-jun Liu, Ke-ling Chen, Hong-wen Li, Jian He, Bin Guan and Li He
    Citation: BMC Genomics 2017 18:984
    Content type: Research article Published on:

  14. Mannoproteins construct the outer cover of the fungal cell wall. The covalently linked cell wall protein Ccw12p is an abundant mannoprotein. It is considered as crucial structural cell wall component since in ...

    Authors: Enrico Ragni, Heidi Piberger, Christine Neupert, Jesús García-Cantalejo, Laura Popolo, Javier Arroyo, Markus Aebi and Sabine Strahl
    Citation: BMC Genomics 2011 12:107
    Content type: Research article Published on:

  15. Chromium (Cr) being multifarious industrial used element, is considered a potential environmental threat. Cr found to be a prospective water and soil pollutant, and thus it is a current area of concern. Oilsee...

    Authors: Rafaqat A. Gill, Basharat Ali, Peng Cui, Enhui Shen, Muhammad A. Farooq, Faisal Islam, Shafaqat Ali, Bizeng Mao and Weijun Zhou
    Citation: BMC Genomics 2016 17:885
    Content type: Research article Published on:

  16. Oct4 is a key factor of an expanded transcriptional network (Oct4-TN) that governs pluripotency and self-renewal in embryonic stem cells (ESCs) and in the inner cell mass from which ESCs are derived. A pending...

    Authors: Maurizio Zuccotti, Valeria Merico, Michele Bellone, Francesca Mulas, Lucia Sacchi, Paola Rebuzzini, Alessandro Prigione, Carlo A Redi, Riccardo Bellazzi, James Adjaye and Silvia Garagna
    Citation: BMC Genomics 2011 12:345
    Content type: Research article Published on:

  17. Venom systems are ideal models to study genetic regulatory mechanisms that underpin evolutionary novelty. Snake venom glands are thought to share a common origin, but there are major distinctions between venom...

    Authors: Cassandra M. Modahl, Summer Xia Han, Jory van Thiel, Candida Vaz, Nathan L. Dunstan, Seth Frietze, Timothy N. W. Jackson, Stephen P. Mackessy and R. Manjunatha Kini
    Citation: BMC Genomics 2024 25:186
    Content type: Research Published on:

  18. Changes in gene expression are known to be responsible for phenotypic variation and susceptibility to diseases. Identification and annotation of the genomic sequence variants that cause gene expression changes...

    Authors: Debraj GuhaThakurta, Tao Xie, Manish Anand, Stephen W Edwards, Guoya Li, Susanna S Wang and Eric E Schadt
    Citation: BMC Genomics 2006 7:235
    Content type: Research article Published on:

  19. Bacterial wilt caused by Ralstonia solanacearum is a serious soil-borne disease of peanut (Arachis hypogaea L). The molecular basis of peanut response to R. solanacearum remains unknown. To understand the resista...

    Authors: Yuning Chen, Xiaoping Ren, Xiaojing Zhou, Li Huang, Liying Yan, Yong Lei, Boshou Liao, Jinyong Huang, Shunmou Huang, Wenhui Wei and Huifang Jiang
    Citation: BMC Genomics 2014 15:1078
    Content type: Research article Published on:

  20. Insecticide-treated bed nets and indoor residual spraying comprise the major control measures against Anopheles gambiae sl, the dominant vector in sub-Saharan Africa. The primary site of contact with insecticide ...

    Authors: M. Kefi, J. Charamis, V. Balabanidou, P. Ioannidis, H. Ranson, V. A. Ingham and J. Vontas
    Citation: BMC Genomics 2021 22:891
    Content type: Research Published on:

  21. Microsporidia are obligate intracellular eukaryotic parasites with genomes ranging in size from 2.3 Mbp to more than 20 Mbp. The extremely small (2.9 Mbp) and highly compact (~1 gene/kb) genome of the human pa...

    Authors: Eric Peyretaillade, Olivier Gonçalves, Sébastien Terrat, Eric Dugat-Bony, Patrick Wincker, Robert S Cornman, Jay D Evans, Frédéric Delbac and Pierre Peyret
    Citation: BMC Genomics 2009 10:607
    Content type: Research article Published on:

  22. Fundamental knowledge of cellular and molecular mechanisms in developing testicular tissues is critical to better understand gonadal biology and responses to non-physiological conditions. The objective of our ...

    Authors: Olga Amelkina, Andreia M. da Silva, Alexandre R. Silva and Pierre Comizzoli
    Citation: BMC Genomics 2021 22:847
    Content type: Research Published on:

  23. Sterile and fertile flowers are important evolutionary developmental phenotypes in angiosperm flowers. The development of floral organs, critical in angiosperm reproduction, is regulated by microRNAs (miRNAs)....

    Authors: Weixing Li, Zhichong He, Li Zhang, Zhaogeng Lu, Jing Xu, Jiawen Cui, Li Wang and Biao Jin
    Citation: BMC Genomics 2017 18:783
    Content type: Research article Published on:

  24. We have previously found substantial animal-to-animal and age-dependent variation in the response of Holstein fibroblast cultures challenged with LPS. To expand on this finding, fibroblast cultures were establ...

    Authors: Aimee L. Benjamin, Benjamin B. Green, Brian A. Crooker, Stephanie D. McKay and David E. Kerr
    Citation: BMC Genomics 2016 17:258
    Content type: Research article Published on:

  25. Trypanosoma brucei, the causative agent of African sleeping sickness, undergoes a complex developmental cycle that takes place in mammalian and insect hosts and is accompanied by changes in metabolism and cellula...

    Authors: Bryan C Jensen, Dhileep Sivam, Charles T Kifer, Peter J Myler and Marilyn Parsons
    Citation: BMC Genomics 2009 10:482
    Content type: Research article Published on:

  26. VQ motif-containing (VQ) proteins are plant-specific proteins that interact with WRKY transcription factors and play important roles in plant growth, development and stress response. To date, VQ gene families hav...

    Authors: Junhong Guo, Jiangfei Chen, Jiankun Yang, Youben Yu, Yajun Yang and Weidong Wang
    Citation: BMC Genomics 2018 19:710
    Content type: Research article Published on:

  27. In models extensively used in studies of aging and extended lifespan, such as C. elegans and Drosophila, adult senescence is regulated by gene networks that are likely to be similar to ones that underlie lifespan...

    Authors: Lucie Kučerová, Olga I. Kubrak, Jonas M. Bengtsson, Hynek Strnad, Sören Nylin, Ulrich Theopold and Dick R. Nässel
    Citation: BMC Genomics 2016 17:50
    Content type: Research article Published on:

  29. Skeletal muscle in livestock develops into meat, an important source of protein and other nutrients for human consumption. The muscle is largely composed of a fixed number of multinucleated myofibers determine...

    Authors: Tomasz Sadkowski, Anna Ciecierska, Jolanta Oprządek and Edyta Balcerek
    Citation: BMC Genomics 2018 19:109
    Content type: Research article Published on:

  30. MicroRNAs (miRNAs) play important roles in plant growth and development. MiRNAs and their targets have been widely studied in model plants, but limited knowledge is available concerning this small RNA populati...

    Authors: Jihong Hu, Jing Jin, Qian Qian, Keke Huang and Yi Ding
    Citation: BMC Genomics 2016 17:684
    Content type: Research article Published on:

  31. To gain insight into host-microbe interactions in a piglet model, a functional genomics approach was used to address the working hypothesis that transcriptionally regulated genes associated with promoting epit...

    Authors: Shankar R Chowdhury, Dale E King, Benjamin P Willing, Mark R Band, Jonathan E Beever, Adrienne B Lane, Juan J Loor, Juan C Marini, Laurie A Rund, Lawrence B Schook, Andrew G Van Kessel and H Rex Gaskins
    Citation: BMC Genomics 2007 8:215
    Content type: Research article Published on:

  32. Methionine (Met) supply during late-pregnancy enhances fetal development in utero and leads to greater rates of growth during the neonatal period. Due to its central role in coordinating nutrient and one-carbo...

    Authors: Valentino Palombo, Abdulrahman Alharthi, Fernanda Batistel, Claudia Parys, Jessie Guyader, Erminio Trevisi, Mariasilvia D’Andrea and Juan J. Loor
    Citation: BMC Genomics 2021 22:280
    Content type: Research article Published on:

  33. Early life malnutrition is known to target adipose tissue with varying impact depending on timing of the insult. This study aimed to identify differentially expressed genes in subcutaneous (SUB) and perirenal ...

    Authors: Sharmila Ahmad, Markus Hodal Drag, Suraya Mohamad Salleh, Zexi Cai and Mette Olaf Nielsen
    Citation: BMC Genomics 2021 22:338
    Content type: Research Published on:

  34. Among twenty amino acids, methionine has a special role as it is coded by the translation initiation codon and methionyl-tRNAi (Met-tRNAi) is required for the assembly of the translation initiation complex. Th...

    Authors: Ke Zou, Qi Ouyang, Hao Li and Jiashun Zheng
    Citation: BMC Genomics 2017 18:189
    Content type: Research Article Published on:

  35. Small RNAs (sRNAs), including small interfering RNAs (siRNAs) and microRNAs (miRNAs), have emerged as important regulators of eukaryotic gene expression. In plants, miRNAs play critical roles in development, n...

    Authors: Patricia Baldrich, Klementina Kakar, Christelle Siré, Ana Beatriz Moreno, Angélique Berger, Meritxell García-Chapa, Juan José López-Moya, José Luis Riechmann and Blanca San Segundo
    Citation: BMC Genomics 2014 15:1083
    Content type: Research article Published on:

  36. Plant response mechanisms to heat and drought stresses have been considered in strategies for generating stress tolerant genotypes, but with limited success. Here, we analyzed the transcriptome and improved to...

    Authors: José A. Casaretto, Ashraf El-kereamy, Bin Zeng, Suzy M. Stiegelmeyer, Xi Chen, Yong-Mei Bi and Steven J. Rothstein
    Citation: BMC Genomics 2016 17:312
    Content type: Research article Published on:

  37. Guava (Psidium guajava L.) is an important fruit crop of tropical and subtropical areas of the world. Genomics resources in guava are scanty. RNA-Seq based tissue specific expressed genomic information, de novo t...

    Authors: Amandeep Mittal, Inderjit Singh Yadav, Naresh Kumar Arora, Rajbir Singh Boora, Meenakshi Mittal, Parwinder Kaur, William Erskine, Parveen Chhuneja, Manav Indra Singh Gill and Kuldeep Singh
    Citation: BMC Genomics 2020 21:484
    Content type: Research article Published on:

  38. Nematodes are the most abundant and diverse metazoans on Earth, and are known to significantly affect ecosystem functioning. A better understanding of their biology and ecology, including potential adaptations...

    Authors: Eli M. S. Gendron, Xue Qing, Joseph L. Sevigny, Hongmei Li, Zhiyin Liu, Mark Blaxter, Thomas O. Powers, W. Kelly Thomas and Dorota L. Porazinska
    Citation: BMC Genomics 2024 25:615
    Content type: Research Published on:

  39. Hybridization is a prominent process in the evolution of crop plants that can give rise to gene expression variation, phenotypic novelty and heterosis. Maize is the most successful crop in utilizing heterosis....

    Authors: Xiaojiao Hu, Hongwu Wang, Xizhou Diao, Zhifang Liu, Kun Li, Yujin Wu, Qianjin Liang, Hui Wang and Changling Huang
    Citation: BMC Genomics 2016 17:959
    Content type: Research article Published on:

  40. Plants synthesize metabolites to adapt to a continuously changing environment. Metabolite biosynthesis often occurs in response to the tissue-specific combinatorial developmental cues that are transcriptionall...

    Authors: Xiaoyang Gao, Qixuan Su, Jing Li, Wenjing Yang, Baolin Yao, Jiawei Guo, Shengying Li and Changning Liu
    Citation: BMC Genomics 2022 23(Suppl 1):559
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 1

  41. In the biotechnological workhorse Trichoderma reesei (Hypocrea jecorina) transcription of cellulase genes as well as efficiency of the secreted cellulase mixture are modulated by light. Components of the heterotr...

    Authors: Doris Tisch, Christian P Kubicek and Monika Schmoll
    Citation: BMC Genomics 2011 12:613
    Content type: Research article Published on:

  42. Rye (Secale cereale), one of the drought and cold-tolerant crops, is an important component of the Triticae Dumortier family of Gramineae plants. Basic helix-loop-helix (bHLH), an important family of transcriptio...

    Authors: Xingyu Chen, Caimei Yao, Jiahao Liu, Jintao Liu, Jingmei Fang, Hong Deng, Qian Yao, Tairan Kang and Xiaoqiang Guo
    Citation: BMC Genomics 2024 25:67
    Content type: Research Published on:

  43. Filamentous fungi such as Aspergillus niger are well known for their exceptionally high capacity for secretion of proteins, organic acids, and secondary metabolites and they are therefore used in biotechnology as...

    Authors: Min Jin Kwon, Thomas R Jørgensen, Benjamin M Nitsche, Mark Arentshorst, Joohae Park, Arthur FJ Ram and Vera Meyer
    Citation: BMC Genomics 2012 13:701
    Content type: Research article Published on:

  44. Head-to-head (h2h) genes are prone to have association in expression and in functionality and have been shown conserved in evolution. Currently there are many studies on such h2h gene pairs. We found that the ...

    Authors: Darby Tien-Hao Chang, Chi-Yeh Wu and Chen-Yu Fan
    Citation: BMC Genomics 2012 13(Suppl 1):S11
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 13 Supplement 1

  45. The parasitoid wasp, Trichogramma dendrolimi, can enter diapause at the prepupal stage. Thus, diapause is an efficient preservation method during the mass production of T. dendrolimi. Previous studies on diapause...

    Authors: Xue Zhang, Wenmei Du, Junjie Zhang, Zhen Zou and Changchun Ruan
    Citation: BMC Genomics 2020 21:864
    Content type: Research article Published on:

  46. Gene expression profiling studies of mastitis in ruminants have provided key but fragmented knowledge for the understanding of the disease. A systematic combination of different expression profiling studies vi...

    Authors: Sem Genini, Bouabid Badaoui, Gert Sclep, Stephen C Bishop, Dave Waddington, Marie-Hélène Pinard van der Laan, Christophe Klopp, Cédric Cabau, Hans-Martin Seyfert, Wolfram Petzl, Kirsty Jensen, Elizabeth J Glass, Astrid de Greeff, Hilde E Smith, Mari A Smits, Ingrid Olsaker…
    Citation: BMC Genomics 2011 12:225
    Content type: Research article Published on:

  48. Long noncoding RNAs (lncRNAs) have emerged as an important class of transcriptional regulators in cellular processes. The past decades have witnessed great progress in lncRNA studies in a variety of organisms....

    Authors: Longsheng Xing, Yu Xi, Xi Qiao, Cong Huang, Qiang Wu, Nianwan Yang, Jianyang Guo, Wanxue Liu, Wei Fan, Fanghao Wan and Wanqiang Qian
    Citation: BMC Genomics 2021 22:4
    Content type: Research article Published on:

  49. Crocus sativus stigmas form rich source of apocarotenoids like crocin, picrocrocin and saffranal which besides imparting color, flavour and aroma to saffron spice also have tremendous ...

    Authors: Shoib Ahmad Baba, Tabasum Mohiuddin, Swaraj Basu, Mohit Kumar Swarnkar, Aubid Hussain Malik, Zahoor Ahmed Wani, Nazia Abbas, Anil Kumar Singh and Nasheeman Ashraf
    Citation: BMC Genomics 2015 16:698
    Content type: Research article Published on:

  50. Understanding the molecular underpinnings of phenotypic variations is critical for enhancing poultry breeding programs. The Brazilian broiler (TT) and laying hen (CC) lines exhibit striking differences in body...

    Authors: Renata Erbert Contriciani, Carla Vermeulen Carvalho Grade, Igor Buzzatto-Leite, Fernanda Cristina da Veiga, Mônica Corrêa Ledur, Antonio Reverter, Pamela Almeida Alexandre, Aline Silva Mello Cesar, Luiz Lehmann Coutinho and Lúcia Elvira Alvares
    Citation: BMC Genomics 2024 25:168
    Content type: Research Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • 2022 Citation Impact
    4.4 - 2-year Impact Factor
    4.7 - 5-year Impact Factor
    1.189 - SNIP (Source Normalized Impact per Paper)
    1.107 - SJR (SCImago Journal Rank)

    2023 Speed
    23 days submission to first editorial decision for all manuscripts (Median)
    137 days submission to accept (Median)

    2023 Usage
    7,167,242 downloads
    4,454 Altmetric mentions

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us