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6356 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The processing ability of poultry meat is highly related to its ultimate pH, the latter being mainly determined by the amount of glycogen in the muscle at death. The genetic determinism of glycogen and related...

    Authors: Vonick Sibut, Christelle Hennequet-Antier, Elisabeth Le Bihan-Duval, Sylvain Marthey, Michel J Duclos and Cécile Berri
    Citation: BMC Genomics 2011 12:112
    Content type: Research article Published on:

  2. The first systematic study of small non-coding RNAs (sRNA, ncRNA) in Streptomyces is presented. Except for a few exceptions, the Streptomyces sRNAs, as well as the sRNAs in other genera of the Actinomyces group, ...

    Authors: Josef Pánek, Jan Bobek, Karel Mikulík, Marek Basler and Jiří Vohradský
    Citation: BMC Genomics 2008 9:217
    Content type: Research article Published on:

  3. Asia minor bluegrass (Polypogon fugax, P. fugax), a weed that is both distributed across China and associated with winter crops, has evolved resistance to acetyl-CoA carboxylase (ACCase) herbicides, but the resis...

    Authors: Fengyan Zhou, Yong Zhang, Wei Tang, Mei Wang and Tongchun Gao
    Citation: BMC Genomics 2017 18:953
    Content type: Research article Published on:

  4. The principal toxicity of acute organophosphate (OP) pesticide poisoning is the disruption of neurotransmission through inhibition of acetylcholinesterase (AChE). However, other mechanisms leading to persisten...

    Authors: John A Lewis, Elizabeth A Gehman, Christine E Baer and David A Jackson
    Citation: BMC Genomics 2013 14:291
    Content type: Research article Published on:

  5. Powdery mildew (PM) is one of the most severe fungal diseases of cucurbits, but the molecular mechanisms underlying PM resistance in cucumber remain elusive. In this study, we developed a PM resistant segment ...

    Authors: Qiang Xu, Xuewen Xu, Yang Shi, Xiaohua Qi and Xuehao Chen
    Citation: BMC Genomics 2017 18:21
    Content type: Research Article Published on:

  6. Endurance exercise training, especially the high-intensity training, exhibits a strong influence on the immune system. However, the mechanisms underpinning the immune-regulatory effect of exercise remain uncle...

    Authors: Dongmei Liu, Ru Wang, Ana R. Grant, Jinming Zhang, Paul M. Gordon, Yuqin Wei and Peijie Chen
    Citation: BMC Genomics 2017 18:29
    Content type: Research article Published on:

  7. Apple replant disease is a soilborne disease caused by Fusarium proliferatum f. sp. malus domestica strain MR5 (abbreviated hereafter as Fpmd MR5) in China. This pathogen causes root tissue rot and wilting leaves...

    Authors: Yanan Duan, Shurui Ma, Xuesen Chen, Xiang Shen, Chengmiao Yin and Zhiquan Mao
    Citation: BMC Genomics 2022 23:484
    Content type: Research Published on:

  8. Cetacean hindlimbs were lost and their forelimb changed into flippers characterized by webbed digits and hyperphalangy, thus allowing them to adapt to a completely aquatic environment. However, the underlying ...

    Authors: Linxia Sun, Xinghua Rong, Xing Liu, Zhenpeng Yu, Qian Zhang, Wenhua Ren, Guang Yang and Shixia Xu
    Citation: BMC Genomics 2022 23:797
    Content type: Research Published on:

  9. Widespread use of chromium (Cr) contaminated fields due to careless and inappropriate management practices of effluent discharge, mostly from industries related to metallurgy, electroplating, production of pai...

    Authors: Sonali Dubey, Prashant Misra, Sanjay Dwivedi, Sandipan Chatterjee, Sumit K Bag, Shrikant Mantri, Mehar H Asif, Arti Rai, Smita Kumar, Manju Shri, Preeti Tripathi, Rudra D Tripathi, Prabodh K Trivedi, Debasis Chakrabarty and Rakesh Tuli
    Citation: BMC Genomics 2010 11:648
    Content type: Research article Published on:

  10. Environmental variation in the amount of resources available to populations challenge individuals to optimize the allocation of those resources to key fitness functions. This coordination of resource allocatio...

    Authors: E. Ng’oma, P. A. Williams-Simon, A. Rahman and E. G. King
    Citation: BMC Genomics 2020 21:84
    Content type: Research article Published on:

  11. Dryopteris fragrans (D. fragrans) is a potential medicinal fern distributed in volcanic magmatic rock areas under tough environmental condition. Sporangia are important organs for fern reproduction. This study wa...

    Authors: Zhen Lu, Qingyang Huang, Tong Zhang, Baozhong Hu and Ying Chang
    Citation: BMC Genomics 2018 19:471
    Content type: Research article Published on:

  12. Phenotypically identical cells demonstrate predictable, robust behaviours. However, there is uncertainty as to whether phenotypically identical cells are equally similar at the underlying transcriptional level...

    Authors: Tatiana Subkhankulova, Michael J Gilchrist and Frederick J Livesey
    Citation: BMC Genomics 2008 9:268
    Content type: Research article Published on:

  13. Staphylococcus epidermidis, long regarded as an innocuous commensal bacterium of the human skin, is the most frequent cause of nosocomial infections associated with implanted medical devices. This conditional pat...

    Authors: Wu Wei, ZhiWei Cao, Yu-Li Zhu, XiaoJing Wang, GuoHui Ding, Hao Xu, PeiLin Jia, Di Qu, Antoine Danchin and YiXue Li
    Citation: BMC Genomics 2006 7:112
    Content type: Research article Published on:

  14. The development of the ovaries is an important factor that affects egg production performance in geese. Ovarian development is regulated by genes that are expressed dynamically and stage-specifically. The tran...

    Authors: Xiaoyu Zhao, Yingping Wu, Haiying Li, Jiahui Li, Yingying Yao, Yan Cao and Zhiyong Mei
    Citation: BMC Genomics 2022 23:607
    Content type: Research Published on:

  15. Genomic approaches provide unique opportunities to study interactions of insects with their pathogens. We developed a cDNA microarray to analyze the gene transcription profile of the lepidopteran pest Spodoptera ...

    Authors: M Barat-Houari, F Hilliou, F-X Jousset, L Sofer, E Deleury, J Rocher, M Ravallec, L Galibert, P Delobel, R Feyereisen, P Fournier and A-N Volkoff
    Citation: BMC Genomics 2006 7:160
    Content type: Research article Published on:

  16. Cross breeding is the most commonly used method in chrysanthemum (Chrysanthemum morifolium) breeding; however, cross barriers always exist in these combinations. Many studies have shown that paternal chromosome d...

    Authors: Fengjiao Zhang, Lichun Hua, Jiangsong Fei, Fan Wang, Yuan Liao, Weimin Fang, Fadi Chen and Nianjun Teng
    Citation: BMC Genomics 2016 17:585
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2016 17:714

  17. The comparison of complete genomes has revealed surprisingly large numbers of conserved non-protein-coding (CNC) DNA regions. However, the biological function of CNC remains elusive. CNC differ in two aspects ...

    Authors: Dorota Retelska, Emmanuel Beaudoing, Cédric Notredame, C Victor Jongeneel and Philipp Bucher
    Citation: BMC Genomics 2007 8:398
    Content type: Research article Published on:

  18. The success of early reproductive events depends on an appropriate communication between gametes/embryos and the oviduct. Extracellular vesicles (EVs) contained in oviductal secretions have been suggested as n...

    Authors: C. Almiñana, G. Tsikis, V. Labas, R. Uzbekov, J. C. da Silveira, S. Bauersachs and P. Mermillod
    Citation: BMC Genomics 2018 19:622
    Content type: Research article Published on:

  19. The spiral cleavage mode of early development is utilized in over one-third of all animal phyla and generates embryonic cells of different size, position, and fate through a conserved set of stereotypic and in...

    Authors: Hsien-Chao Chou, Margaret M. Pruitt, Benjamin R. Bastin and Stephan Q. Schneider
    Citation: BMC Genomics 2016 17:552
    Content type: Research article Published on:

  20. The brown adipose tissue (BAT) is a target for treating obesity. BAT losses thermogenic capacity and gains a “white adipose tissue-like” phenotype (“BAT whitening”) under thermoneutral environments, which is a...

    Authors: Kun Du, Xue Bai, Li Chen, Yu Shi, Hao-ding Wang, Ming-cheng Cai, Wen-qiang Sun, Jie Wang, Shi-yi Chen, Xian-bo Jia and Song-jia Lai
    Citation: BMC Genomics 2022 23:779
    Content type: Research Published on:

  21. Resistance of pest insect species to insecticides, including B. thuringiensis (Bt) pesticidal proteins expressed by transgenic plants, is a threat to global food security. Despite the western corn rootworm, Diabr...

    Authors: Brad S. Coates, Emeline Deleury, Aaron J. Gassmann, Bruce E. Hibbard, Lance J. Meinke, Nicholas J. Miller, Jennifer Petzold-Maxwell, B. Wade French, Thomas W. Sappington, Blair D. Siegfried and Thomas Guillemaud
    Citation: BMC Genomics 2021 22:639
    Content type: Research Published on:

  22. Genome-scale prediction of gene regulation and reconstruction of transcriptional regulatory networks in bacteria is one of the critical tasks of modern genomics. The Shewanella genus is comprised of metabolically...

    Authors: Dmitry A Rodionov, Pavel S Novichkov, Elena D Stavrovskaya, Irina A Rodionova, Xiaoqing Li, Marat D Kazanov, Dmitry A Ravcheev, Anna V Gerasimova, Alexey E Kazakov, Galina Yu Kovaleva, Elizabeth A Permina, Olga N Laikova, Ross Overbeek, Margaret F Romine, James K Fredrickson, Adam P Arkin…
    Citation: BMC Genomics 2011 12(Suppl 1):S3
    Content type: Research Published on:

    This article is part of a Supplement: Volume 12 Supplement 1

  23. The floral transition plays a vital role in the life of ornamental plants. Despite progress in model plants, the molecular mechanisms of flowering regulation remain unknown in perennial plants. Rosa chinensis ‘Ol...

    Authors: Xuelian Guo, Chao Yu, Le Luo, Huihua Wan, Ni Zhen, Tingliang Xu, Jiongrui Tan, Huitang Pan and Qixiang Zhang
    Citation: BMC Genomics 2017 18:199
    Content type: Research article Published on:

  24. Phenotypic evolution in animals is thought to be driven in large part by differences in gene expression patterns, which can result from sequence changes in cis- regulatory elements (cis- changes) or from changes ...

    Authors: Ana Ariza-Cosano, Axel Visel, Len A Pennacchio, Hunter B Fraser, José Luis Gómez-Skarmeta, Manuel Irimia and José Bessa
    Citation: BMC Genomics 2012 13:713
    Content type: Research article Published on:

  25. Uncovering the molecular mechanisms involved in epileptogenesis is critical to better understand the physiopathology of epilepsies and to help develop new therapeutic strategies for this prevalent and severe n...

    Authors: Oswaldo K Okamoto, Luciana Janjoppi, Felipe M Bonone, Aline P Pansani, Alexandre V da Silva, Fúlvio A Scorza and Esper A Cavalheiro
    Citation: BMC Genomics 2010 11:230
    Content type: Research article Published on:

  26. Tropical water lily is an aquatic plant with high ornamental value, but it cannot overwinter naturally at high latitudes. The temperature drop has become a key factor restricting the development and promotion ...

    Authors: Xiangyu Ma, Qijiang Jin, Yanjie Wang, Xiaowen Wang, Xuelian Wang, Meihua Yang, Chunxiu Ye, Zhijuan Yang and Yingchun XU
    Citation: BMC Genomics 2023 24:82
    Content type: Research Published on:

  27. The Down syndrome phenotype has been attributed to overexpression of chromosome 21 (Hsa21) genes. However, the expression profile of Hsa21 genes in trisomic human subjects as well as their effects on genes loc...

    Authors: Anna Conti, Floriana Fabbrini, Paola D'Agostino, Rosa Negri, Dario Greco, Rita Genesio, Maria D'Armiento, Carlo Olla, Dario Paladini, Mariastella Zannini and Lucio Nitsch
    Citation: BMC Genomics 2007 8:268
    Content type: Research article Published on:

  28. Mitotic terminally differentiated photoreceptors (PRs) are observed in early retinal degeneration (erd), an inherited canine retinal disease driven by mutations in the NDR kinase STK38L (NDR2).

    Authors: Kristin L. Gardiner, Louise Downs, Agnes I. Berta-Antalics, Evelyn Santana, Gustavo D. Aguirre and Sem Genini
    Citation: BMC Genomics 2016 17:221
    Content type: Research article Published on:

  29. Streptomyces hygroscopicus 5008 has been used for the production of the antifungal validamycin/jinggangmycin for more than 40 years. A high yield of validamycin is achieved by culturing the strain at 37°C, rather...

    Authors: Hang Wu, Shuang Qu, Chenyang Lu, Huajun Zheng, Xiufen Zhou, Linquan Bai and Zixin Deng
    Citation: BMC Genomics 2012 13:337
    Content type: Research article Published on:

  30. Despite the tremendous therapeutic advances that have stemmed from somatic oncogenetics, survival of some cancers has not improved in 50 years. Osteosarcoma still has a 5-year survival rate of 66%. We propose ...

    Authors: Isain Zapata, Luis E. Moraes, Elise M. Fiala, Sara Zaldivar-Lopez, C. Guillermo Couto, Jennie L. Rowell and Carlos E. Alvarez
    Citation: BMC Genomics 2019 20:226
    Content type: Research article Published on:

  31. The fruit of litchi (Litchi chinensis) comprises a white translucent edible aril surrounded by a pericarp. The pericarp of litchi has been the focus of studies associated with fruit size, coloration, cracking and...

    Authors: Biao Lai, Bing Hu, Yong-Hua Qin, Jie-Tang Zhao, Hui-Cong Wang and Gui-Bing Hu
    Citation: BMC Genomics 2015 16:225
    Content type: Research article Published on:

  32. Chinese sprangletop [Leptochloa chinensis (L.) Nees] is an annual malignant weed, which can often be found in paddy fields. Cyhalofop-butyl is a specialized herbicide which is utilized to control L. chinensis. Ho...

    Authors: Ke Chen, Yajun Peng, Liang Zhang, Long Wang, Donghai Mao, Zhenghong Zhao, Lianyang Bai and Lifeng Wang
    Citation: BMC Genomics 2021 22:521
    Content type: Research Published on:

  33. The recent access to a large set of genome sequences, combined with a robust evolutionary scenario of modern monocot (i.e. grasses) and eudicot (i.e. rosids) species from their founder ancestors, offered the oppo...

    Authors: Rongzhi Zhang, Florent Murat, Caroline Pont, Thierry Langin and Jerome Salse
    Citation: BMC Genomics 2014 15:187
    Content type: Research article Published on:

  34. Keratinocytes (KCs) are the most frequent cells in the epidermis, and they are often isolated and cultured in vitro to study the molecular biology of the skin. Cultured primary cells and various immortalized cell...

    Authors: Shintaro Katayama, Tiina Skoog, Eeva-Mari Jouhilahti, H. Annika Siitonen, Kristo Nuutila, Mari H Tervaniemi, Jyrki Vuola, Anna Johnsson, Peter Lönnerberg, Sten Linnarsson, Outi Elomaa, Esko Kankuri and Juha Kere
    Citation: BMC Genomics 2015 16:476
    Content type: Research article Published on:

  35. Drosophila melanogaster adult males perform an elaborate courtship ritual to entice females to mate. fruitless (fru), a gene that is one of the key regulators of male courtship behavior, encodes multiple male-spe...

    Authors: Justin E Dalton, Justin M Fear, Simon Knott, Bruce S Baker, Lauren M McIntyre and Michelle N Arbeitman
    Citation: BMC Genomics 2013 14:659
    Content type: Research article Published on:

  36. miRNAs play critical roles in growth and development. Various studies of chicken muscle development have focused on identifying miRNAs that are important for embryo or adult muscle development. However, littl...

    Authors: Jie Liu, Fuwei Li, Xin Hu, Dingguo Cao, Wei Liu, Haixia Han, Yan Zhou and Qiuxia Lei
    Citation: BMC Genomics 2021 22:64
    Content type: Research article Published on:

  37. Ustilago maydis is the basidiomycete fungus responsible for common smut of corn and is a model organism for the study of fungal phytopathogenesis. To aid in the annotation of the genome sequence of this organism,...

    Authors: Eric CH Ho, Matt J Cahill and Barry J Saville
    Citation: BMC Genomics 2007 8:334
    Content type: Research article Published on:

  38. Apomixis is considered an evolutionary deviation of the sexual reproductive pathway leading to the generation of clonal maternal progenies by seeds. Recent evidence from model and non-model species suggested t...

    Authors: Juan Pablo A. Ortiz, Olivier Leblanc, Cristian Rohr, Mauricio Grisolia, Lorena A. Siena, Maricel Podio, Carolina Colono, Celeste Azzaro and Silvina C. Pessino
    Citation: BMC Genomics 2019 20:487
    Content type: Research article Published on:

  39. Peanut is an economically-important oilseed crop and needs a large amount of calcium for its normal growth and development. Calcium deficiency usually leads to embryo abortion and subsequent abnormal pod devel...

    Authors: Kang Tang, Lin Li, Bowen Zhang, Wei Zhang, Ningbo Zeng, Hao Zhang, Dengwang Liu and Zinan Luo
    Citation: BMC Genomics 2023 24:421
    Content type: Research Published on:

  40. Porcine reproductive and respiratory syndrome (PRRS) is one of the most economically important viral diseases affecting swine industry worldwide. Despite routine farm vaccination, effective control strategies ...

    Authors: Md Aminul Islam, Christine Große-Brinkhaus, Maren Julia Pröll, Muhammad Jasim Uddin, Sharmin Aqter Rony, Dawit Tesfaye, Ernst Tholen, Michael Hölker, Karl Schellander and Christiane Neuhoff
    Citation: BMC Genomics 2016 17:641
    Content type: Research article Published on:

  41. Directed cell migration is a fundamental process in normal development and in tumor metastasis. In C. elegans the MAB-5/Hox transcription factor is a determinant of posterior migration of the Q neuroblast descend...

    Authors: Joel V Tamayo, Mahekta Gujar, Stuart J Macdonald and Erik A Lundquist
    Citation: BMC Genomics 2013 14:304
    Content type: Research article Published on:

  42. The ability of the human malarial parasite Plasmodium falciparum to invade, colonise and multiply within diverse host environments, as well as to manifest its virulence within the human host, are activities tight...

    Authors: Karen Russell, Sandra Hasenkamp, Richard Emes and Paul Horrocks
    Citation: BMC Genomics 2013 14:267
    Content type: Research article Published on:

  43. Dinotefuran (CAS No. 165252–70-0), a neonicotinoid insecticide, has been used to protect various crops against invertebrate pests and has been associated with numerous negative sublethal effects on honey bees....

    Authors: Minjie Huang, Jie Dong, Haikun Guo, Minghui Xiao and Deqian Wang
    Citation: BMC Genomics 2021 22:502
    Content type: Research Published on:

  44. Many studies have shown that guanine-rich DNA sequences form quadruplex structures (G4) in vitro but there is scarce evidence of guanine quadruplexes in vivo. The majority of potential quadruplex-forming seque...

    Authors: Viktor Tokan, Janka Puterova, Matej Lexa and Eduard Kejnovsky
    Citation: BMC Genomics 2018 19:184
    Content type: Research article Published on:

  45. The Gretchen Hagen 3 (GH3) genes encode acyl acid amido synthetases, many of which have been shown to modulate the amount of active plant hormones or their precursors. GH3 genes, especially Group III subgroup 6 G...

    Authors: Jiseong Jeong, Sunhee Park, Jeong Hui Im and Hankuil Yi
    Citation: BMC Genomics 2021 22:22
    Content type: Research article Published on:

  46. Several tools have been developed to perform global gene expression profile data analysis, to search for specific chromosomal regions whose features meet defined criteria as well as to study neighbouring gene ...

    Authors: Luca Lenzi, Federica Facchin, Francesco Piva, Matteo Giulietti, Maria Chiara Pelleri, Flavia Frabetti, Lorenza Vitale, Raffaella Casadei, Silvia Canaider, Stefania Bortoluzzi, Alessandro Coppe, Gian Antonio Danieli, Giovanni Principato, Sergio Ferrari and Pierluigi Strippoli
    Citation: BMC Genomics 2011 12:121
    Content type: Research article Published on:

  47. Protein kinases and phosphatases regulate protein phosphorylation, a critical means of modulating protein function, stability and localization. The identification of functional networks for protein phosphatase...

    Authors: Michael R Logan, Thao Nguyen, Nicolas Szapiel, James Knockleby, Hanting Por, Megan Zadworny, Michael Neszt, Paul Harrison, Howard Bussey, Craig A Mandato, Jackie Vogel and Guillaume Lesage
    Citation: BMC Genomics 2008 9:336
    Content type: Research article Published on:

  48. The transcription factor p63 belongs to the p53/p63/p73 family and plays key functional roles during normal epithelial development and differentiation and in pathological states such as squamous cell carcinoma...

    Authors: Isha Sethi, Rose-Anne Romano, Christian Gluck, Kirsten Smalley, Borivoj Vojtesek, Michael J. Buck and Satrajit Sinha
    Citation: BMC Genomics 2015 16:584
    Content type: Research article Published on:

  49. Human embryonic stem (ES) cells hold great promise for medicine and science. The transcriptome of human ES cells has been studied in detail in recent years. However, no systematic analysis has yet addressed wh...

    Authors: Huai Li, Ying Liu, Soojung Shin, Yu Sun, Jeanne F Loring, Mark P Mattson, Mahendra S Rao and Ming Zhan 1
    Citation: BMC Genomics 2006 7:103
    Content type: Research article Published on:

  50. Long intergenic non-coding RNAs (lincRNAs) can act as regulators of expression of protein-coding genes. Trans-natural antisense transcripts (trans-NATs) are a type of lincRNAs that contain sequence complementary ...

    Authors: Jules Deforges, Rodrigo S. Reis, Philippe Jacquet, Dominique Jacques Vuarambon and Yves Poirier
    Citation: BMC Genomics 2019 20:601
    Content type: Research article Published on:

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