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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The length of cotton fiber is an important agronomic trait that directly affects the quality of yarn and fabric. Understanding the molecular basis of fiber elongation would provide a means for improvement of f...

    Authors: Marina Naoumkina, Gregory N. Thyssen, David D. Fang, Doug J. Hinchliffe, Christopher B. Florane and Johnie N. Jenkins
    Citation: BMC Genomics 2016 17:360
    Content type: Research article Published on:

  2. Clerodendrum inerme (L.) Gaertn, a halophyte, usually grows on coastal beaches as an important mangrove plant. The salt-tolerant mechanisms and related genes of this species that respond to short-term salinity st...

    Authors: Yuping Xiong, Haifeng Yan, Hanzhi Liang, Yueya Zhang, Beiyi Guo, Meiyun Niu, Shuguang Jian, Hai Ren, Xinhua Zhang, Yuan Li, Songjun Zeng, Kunlin Wu, Feng Zheng, Jaime A. Teixeira da Silva and Guohua Ma
    Citation: BMC Genomics 2019 20:724
    Content type: Research article Published on:

  3. Previous studies have shown that acute intake of high-phenol virgin olive oil reduces pro-inflammatory, pro-oxidant and pro-thrombotic markers compared with low phenols virgin olive oil, but it still remains u...

    Authors: Antonio Camargo, Juan Ruano, Juan M Fernandez, Laurence D Parnell, Anabel Jimenez, Monica Santos-Gonzalez, Carmen Marin, Pablo Perez-Martinez, Marino Uceda, Jose Lopez-Miranda and Francisco Perez-Jimenez
    Citation: BMC Genomics 2010 11:253
    Content type: Research article Published on:

  4. The harsh environment on the Qinghai-Tibetan Plateau gives Tibetan hulless barley (Hordeum vulgare var. nudum) great ability to resist adversities such as drought, salinity, and low temperature, and makes it a go...

    Authors: Junjun Liang, Xin Chen, Guangbing Deng, Zhifen Pan, Haili Zhang, Qiao Li, Kaijun Yang, Hai Long and Maoqun Yu
    Citation: BMC Genomics 2017 18:775
    Content type: Research article Published on:

  5. Studies have shown the strong association between histone modification levels and gene expression levels. The detailed relationships between the two can vary substantially due to differential regulation, and h...

    Authors: Yeonok Lee, Debashis Ghosh and Yu Zhang
    Citation: BMC Genomics 2014 15:360
    Content type: Methodology article Published on:

  6. The striped catfish, Pangasianodon hypophthalmus, is a freshwater and benthopelagic fish common in the Mekong River delta. Catfish constitute a valuable source of dietary protein. Therefore, they are cultured wor...

    Authors: Oanh T. P. Kim, Phuong T. Nguyen, Eiichi Shoguchi, Kanako Hisata, Thuy T. B. Vo, Jun Inoue, Chuya Shinzato, Binh T. N. Le, Koki Nishitsuji, Miyuki Kanda, Vu H. Nguyen, Hai V. Nong and Noriyuki Satoh
    Citation: BMC Genomics 2018 19:733
    Content type: Research article Published on:

  7. Ivermectin has been proposed as a novel malaria transmission control tool based on its insecticidal properties and unique route of acquisition through human blood. To maximize ivermectin’s effect and identify ...

    Authors: Jonathan A. Seaman, Haoues Alout, Jacob I. Meyers, Mark D. Stenglein, Roch K. Dabiré, Saul Lozano-Fuentes, Timothy A. Burton, Wojtek S. Kuklinski, William C. Black IV and Brian D. Foy
    Citation: BMC Genomics 2015 16:797
    Content type: Research article Published on:

  9. In order to identify rice genes involved in nutrient partitioning, microarray experiments have been done to quantify genomic scale gene expression. Genes involved in nutrient partitioning, specifically grain f...

    Authors: Abraham Anderson, Matthew Hudson, Wenqiong Chen and Tong Zhu
    Citation: BMC Genomics 2003 4:26
    Content type: Research article Published on:

  10. Identifying the functional importance of the millions of single nucleotide polymorphisms (SNPs) in the human genome is a difficult challenge. Therefore, a reverse strategy, which identifies functionally import...

    Authors: Muna Affara, Benjamin J Dunmore, Deborah A Sanders, Nicola Johnson, Cristin G Print and D Stephen Charnock-Jones
    Citation: BMC Genomics 2011 12:43
    Content type: Research article Published on:

  11. Transcription factor (TF) GAMYB, belonging to MYB family (named after the gene of the avian myeloblastosis virus) is a master gibberellin (GA)-induced regulatory protein that is crucial for development and germin...

    Authors: Anna Bienias, Magdalena Góralska, Piotr Masojć, Paweł Milczarski and Beata Myśków
    Citation: BMC Genomics 2020 21:578
    Content type: Research article Published on:

  12. Yaks that inhabit the Tibetan Plateau exhibit striking phenotypic and physiological differences from cattle and have adapted well to the extreme conditions on the plateau. However, the mechanisms used by these...

    Authors: Qianyun Ge, Yongbo Guo, Wangshan Zheng, Yuan Cai, Xuebin Qi and Shengguo Zhao
    Citation: BMC Genomics 2021 22:744
    Content type: Research article Published on:

  13. The distribution and location of insertion elements in a genome is an excellent tool to track the evolution of bacterial strains and a useful molecular marker to distinguish between closely related bacterial i...

    Authors: Betsy M Martinez-Vaz, Yang Xie, Wei Pan and Arkady B Khodursky
    Citation: BMC Genomics 2005 6:81
    Content type: Methodology article Published on:

  14. GLV-1h68 is an attenuated recombinant vaccinia virus (VACV) that selectively colonizes established human xenografts inducing their complete regression.

    Authors: Andrea Worschech, Nanhai Chen, Yong A Yu, Qian Zhang, Zoltan Pos, Stephanie Weibel, Viktoria Raab, Marianna Sabatino, Alessandro Monaco, Hui Liu, Vladia Monsurró, R Mark Buller, David F Stroncek, Ena Wang, Aladar A Szalay and Francesco M Marincola
    Citation: BMC Genomics 2009 10:301
    Content type: Research article Published on:

  15. The splicing of pre-mRNAs is conspicuously often variable and produces multiple alternatively spliced (AS) isoforms that encode different messages from one gene locus. Computational studies uncovered a class o...

    Authors: Ralf Bortfeldt, Stefanie Schindler, Karol Szafranski, Stefan Schuster and Dirk Holste
    Citation: BMC Genomics 2008 9:202
    Content type: Research article Published on:

  16. Sand flies are the vectors of Leishmania parasites. To develop in the sand fly midgut, Leishmania multiplies and undergoes various stage differentiations giving rise to the infective form, the metacyclic promasti...

    Authors: Iliano V. Coutinho-Abreu, Tiago Donatelli Serafim, Claudio Meneses, Shaden Kamhawi, Fabiano Oliveira and Jesus G. Valenzuela
    Citation: BMC Genomics 2020 21:608
    Content type: Research article Published on:

  17. WRKY proteins are a large family of transcriptional regulators in higher plant. They are involved in many biological processes, such as plant development, metabolism, and responses to biotic and abiotic stress...

    Authors: Jian Ling, Weijie Jiang, Ying Zhang, Hongjun Yu, Zhenchuan Mao, Xingfang Gu, Sanwen Huang and Bingyan Xie
    Citation: BMC Genomics 2011 12:471
    Content type: Research article Published on:

  18. The yellow catfish, Pelteobagrus fulvidraco, is a commercially important fish species. It is widely distributed in the fresh water areas of China, including rivers, lakes, and reservoirs. Like many other aquacult...

    Authors: Dong Gao, Junrou Huang, Genmei Lin and Jianguo Lu
    Citation: BMC Genomics 2022 23(Suppl 1):409
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 1

  19. The thymus is a highly specialized organ of the immune system where T cell precursors develop and differentiate into self-tolerant CD4+ or CD8+ T cells. No studies to date have investigated how the human trans...

    Authors: Hanna Helgeland, Ingvild Gabrielsen, Helle Akselsen, Arvind Y. M. Sundaram, Siri Tennebø Flåm and Benedicte Alexandra Lie
    Citation: BMC Genomics 2020 21:350
    Content type: Research article Published on:

  20. Iron-deficiency anemia is the most prevalent form of anemia world-wide. The yeast Saccharomyces cerevisiae has been used as a model of cellular iron deficiency, in part because many of its cellular pathways are c...

    Authors: William J Jo, Jeung Hyoun Kim, Eric Oh, Daniel Jaramillo, Patricia Holman, Alex V Loguinov, Adam P Arkin, Corey Nislow, Guri Giaever and Chris D Vulpe
    Citation: BMC Genomics 2009 10:130
    Content type: Research article Published on:

  23. Purple-fleshed sweetpotato (PFSP) is one of the most important crops in the word which helps to bridge the food gap and contribute to solve the malnutrition problem especially in developing countries. Salt str...

    Authors: Mohamed Hamed Arisha, Hesham Aboelnasr, Muhammad Qadir Ahmad, Yaju Liu, Wei Tang, Runfei Gao, Hui Yan, Meng Kou, Xin Wang, Yungang Zhang and Qiang Li
    Citation: BMC Genomics 2020 21:197
    Content type: Research article Published on:

  24. Nerve growth factor (NGF) is a potent growth factor that plays a key role in neuronal cell differentiation and may also play a role in hematopoietic differentiation. It has been shown that NGF induced synergis...

    Authors: Priyanka Dutta, Alexandra Koch, Bjoern Breyer, Heike Schneider, Oliver Dittrich-Breiholz, Michael Kracht and Teruko Tamura
    Citation: BMC Genomics 2011 12:196
    Content type: Research article Published on:

  25. Soil salinity affects growth and yield of crop plants. Plants respond to salinity by physiological and biochemical adjustments through a coordinated regulation and expression of a cascade of genes. Recently, h...

    Authors: Renesh Bedre, Venkata Ramanarao Mangu, Subodh Srivastava, Luis Eduardo Sanchez and Niranjan Baisakh
    Citation: BMC Genomics 2016 17:657
    Content type: Research article Published on:

  26. A strain of Leghorn chickens (rd/rd), unable to produce a functional riboflavin-binding protein, lays riboflavin-deficient eggs, in which all embryos suddenly die at mid-incubation (days 13-15). This malady, caus...

    Authors: Larry A. Cogburn, Danielle N. Smarsh, Xiaofei Wang, Nares Trakooljul, Wilfrid Carré and Harold B. White III
    Citation: BMC Genomics 2018 19:177
    Content type: Research article Published on:

  27. Insects are the most important epidemiological factors for plant virus disease spread, with >75% of viruses being dependent on insects for transmission to new hosts. The black-faced leafhopper (Graminella nigrifr...

    Authors: Bryan J Cassone, Saranga Wijeratne, Andrew P Michel, Lucy R Stewart, Yuting Chen, Pearlly Yan and Margaret G Redinbaugh
    Citation: BMC Genomics 2014 15:133
    Content type: Research article Published on:

  28. Cold temperatures and their alleviation affect many plant traits including the abundance of protein coding gene transcripts. Transcript level changes that occur in response to cold temperatures and their allev...

    Authors: Luis M Avila, Wisam Obeidat, Hugh Earl, Xiaomu Niu, William Hargreaves and Lewis Lukens
    Citation: BMC Genomics 2018 19:761
    Content type: Research article Published on:

  29. RNA sequencing offers advantages over other quantification methods for microRNA (miRNA), yet numerous biases make reliable quantification challenging. Previous evaluations of these biases have focused on adapt...

    Authors: Carrie Wright, Anandita Rajpurohit, Emily E. Burke, Courtney Williams, Leonardo Collado-Torres, Martha Kimos, Nicholas J. Brandon, Alan J. Cross, Andrew E. Jaffe, Daniel R. Weinberger and Joo Heon Shin
    Citation: BMC Genomics 2019 20:513
    Content type: Methodology article Published on:

  30. Mammalian follicle development is characterized by extensive changes in morphology, endocrine responsiveness, and function, providing the optimum environment for oocyte growth, development, and resumption of m...

    Authors: Lais Barbosa Latorraca, António Galvão, Maria Belen Rabaglino, Julieta Maria D’Augero, Gavin Kelsey and Trudee Fair
    Citation: BMC Genomics 2024 25:335
    Content type: Research Published on:

  31. Pathogens can infect their hosts through different routes. For studying the consequences for host resistance, we here used the entomopathogen Bacillus thuringiensis and the red flour beetle Tribolium castaneum fo...

    Authors: Sarah Behrens, Robert Peuß, Barbara Milutinović, Hendrik Eggert, Daniela Esser, Philip Rosenstiel, Hinrich Schulenburg, Erich Bornberg-Bauer and Joachim Kurtz
    Citation: BMC Genomics 2014 15:445
    Content type: Research article Published on:

  32. Stem cells located in the centre of the shoot apical meristem are required for the repetitive formation of new organs such as leaves, branches and flowers. In Arabidopsis thaliana, the ZWILLE/PINHEAD/AGO10 (ZLL) ...

    Authors: Matthew R Tucker, Farshad Roodbarkelari, Elisabeth Truernit, Nikolai M Adamski, Annika Hinze, Barbara Lohmüller, Tobias Würschum and Thomas Laux
    Citation: BMC Genomics 2013 14:809
    Content type: Research article Published on:

  33. Growing evidence indicates that RNA methylation plays a fundamental role in epigenetic regulation, which is associated with the tumorigenesis and drug resistance. Among them, acute myeloid leukemia (AML), as t...

    Authors: Jingyi Han, Qinqin Liu, Yao Zhou, Dong Li and Ran Wang
    Citation: BMC Genomics 2023 24:425
    Content type: Research Published on:

  34. Virus infection induces the activation and suppression of global gene expression in the host. Profiling gene expression changes in the host may provide insights into the molecular mechanisms that underlie host...

    Authors: Mohan Babu, Jonathan S Griffiths, Tyng-Shyan Huang and Aiming Wang
    Citation: BMC Genomics 2008 9:325
    Content type: Research article Published on:

  35. The investigation of extremophile plant species growing in their natural environment offers certain advantages, chiefly that plants adapted to severe habitats have a repertoire of stress tolerance genes that a...

    Authors: Marc J Champigny, Wilson WL Sung, Vasile Catana, Rupa Salwan, Peter S Summers, Susan A Dudley, Nicholas J Provart, Robin K Cameron, G Brian Golding and Elizabeth A Weretilnyk
    Citation: BMC Genomics 2013 14:578
    Content type: Research article Published on:

  36. Dormancy of buds is a critical developmental process that allows perennial plants to survive extreme seasonal variations in climate. Dormancy transitions in underground crown buds of the model herbaceous peren...

    Authors: David P Horvath, Wun S Chao, Jeffrey C Suttle, Jyothi Thimmapuram and James V Anderson
    Citation: BMC Genomics 2008 9:536
    Content type: Research article Published on:

  37. Quantitative phenotypic variation of agronomic characters in crop plants is controlled by environmental and genetic factors (quantitative trait loci = QTL). To understand the molecular basis of such QTL, the i...

    Authors: Agim Ballvora, Anika Jöcker, Prisca Viehöver, Hirofumi Ishihara, Jürgen Paal, Khalid Meksem, Rémy Bruggmann, Heiko Schoof, Bernd Weisshaar and Christiane Gebhardt
    Citation: BMC Genomics 2007 8:112
    Content type: Research article Published on:

  38. Transcriptome sequencing of brain samples provides detailed enrichment analysis of differential expression and genetic interactions for evaluation of mitochondrial and coagulation function of schizophrenia. It...

    Authors: Kuo-Chuan Huang, Ko-Chun Yang, Han Lin, Theresa Tsun-Hui Tsao and Sheng-An Lee
    Citation: BMC Genomics 2014 15(Suppl 9):S6
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 9

  39. Long-range chromatin interactions play an important role in transcription regulation. Chromatin Interaction Analysis with Paired-End-Tag sequencing (ChIA-PET) is an emerging technology that has unique advantag...

    Authors: Guoliang Li, Liuyang Cai, Huidan Chang, Ping Hong, Qiangwei Zhou, Ekaterina V Kulakova, Nikolay A Kolchanov and Yijun Ruan
    Citation: BMC Genomics 2014 15(Suppl 12):S11
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 12

  40. Associations of tree roots with diverse symbiotic mycorrhizal fungi have distinct effects on whole plant functioning. An untested explanation might be that such effect variability is associated with distinct i...

    Authors: Marie-Lara Bouffaud, Sylvie Herrmann, Mika T. Tarkka, Markus Bönn, Lasse Feldhahn and François Buscot
    Citation: BMC Genomics 2020 21:399
    Content type: Research article Published on:

  41. Histone modifications play a significant role in the regulation of transcription and various biological processes, such as development and regeneration. Though a few genomic (including DNA methylation patterns...

    Authors: Vasudevan Ayyappan, Venkateswara R. Sripathi, Venu ( Kal) Kalavacharla, Malay C. Saha, Jyothi Thimmapuram, Ketaki P. Bhide and Elizabeth Fiedler
    Citation: BMC Genomics 2019 20:667
    Content type: Research article Published on:

  42. Paphiopedilum is an important genus of the orchid family Orchidaceae and has high horticultural value. The wild populations are under threat of extinction because of overcollection and habitat destruction. Mature...

    Authors: Lin Fang, Xin Xu, Ji Li, Feng Zheng, Mingzhi Li, Jingwei Yan, Yuan Li, Xinhua Zhang, Lin Li, Guohua Ma, Aying Zhang, Fubing Lv, Kunlin Wu and Songjun Zeng
    Citation: BMC Genomics 2020 21:524
    Content type: Research article Published on:

  44. Sunflower Verticillium wilt (SVW) is a vascular disease caused by root infection with Verticillium dahliae (V. dahlia). It is a serious threat to the yield and quality of sunflower. However, chemical and agronomi...

    Authors: Shuchun Guo, Yongchun Zuo, Yanfang Zhang, Chengyan Wu, Wenxia Su, Wen Jin, Haifeng Yu, Yulin An and Qianzhong Li
    Citation: BMC Genomics 2017 18:42
    Content type: Research article Published on:

  46. Because number of matured muscle fibers in poultry does not increase after birth, the meat yield is mainly determined during embryogenesis. We previously indicated breast muscle grew rapidly from 18th day afte...

    Authors: Lihong Gu, Jile Chen, Chengjun Hu, Dingfa Wang, Shuqian Huan, Guang Rong, Renlong Lv and Tieshan Xu
    Citation: BMC Genomics 2024 25:551
    Content type: Research Published on:

  47. Messenger RNA polyadenylation is an essential step for the maturation of most eukaryotic mRNAs. Accurate determination of poly(A) sites helps define the 3’-ends of genes, which is important for genome annotati...

    Authors: Xiaohui Wu, Yong Zeng, Jinting Guan, Guoli Ji, Rongting Huang and Qingshun Q. Li
    Citation: BMC Genomics 2015 16:511
    Content type: Research article Published on:

  48. Starch is the principle constituent of potato tubers and is of considerable importance for food and non-food applications. Its metabolism has been subject of extensive research over the past decades. Despite i...

    Authors: Jessica K. Van Harsselaar, Julia Lorenz, Melanie Senning, Uwe Sonnewald and Sophia Sonnewald
    Citation: BMC Genomics 2017 18:37
    Content type: Research article Published on:

  49. YY1 is an epigenetic regulator for a large number of mammalian genes. While performing genome-wide YY1 binding motif searches, we discovered that the olfactory receptor (OLFR) genes have an unusual cluster of ...

    Authors: Christopher D Faulk and Joomyeong Kim
    Citation: BMC Genomics 2009 10:576
    Content type: Research article Published on:

  50. Predatory mites (Acari: Phytoseiidae) are the most important beneficial arthropods used in augmentative biological pest control of protected crops around the world. However, the genomes of mites are far less w...

    Authors: Yan-Xuan Zhang, Xia Chen, Jie-Ping Wang, Zhi-Qiang Zhang, Hui Wei, Hai-Yan Yu, Hong-Kun Zheng, Yong Chen, Li-Sheng Zhang, Jian-Zhen Lin, Li Sun, Dong-Yuan Liu, Juan Tang, Yan Lei, Xu-Ming Li and Min Liu
    Citation: BMC Genomics 2019 20:954
    Content type: Research article Published on:

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