Skip to main content

Articles

6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 46 of 128

  1. Haemophilus parasuis (HPS) is an important swine pathogen that causes Glässer's disease, which is characterized by fibrinous polyserositis, meningitis and arthritis. The molecular mechanisms that underlie the pat...

    Authors: Hongbo Chen, Changchun Li, Mingdi Fang, Mengjin Zhu, Xinyun Li, Rui Zhou, Kui Li and Shuhong Zhao
    Citation: BMC Genomics 2009 10:64
    Content type: Research article Published on:

  2. The existence of a genetic basis for host responses to bacterial intramammary infections has been widely documented, but the underlying mechanisms and the genes are still largely unknown. Previously, two diver...

    Authors: Cécile MD Bonnefont, Mehdi Toufeer, Cécile Caubet, Eliane Foulon, Christian Tasca, Marie-Rose Aurel, Dominique Bergonier, Séverine Boullier, Christèle Robert-Granié, Gilles Foucras and Rachel Rupp
    Citation: BMC Genomics 2011 12:208
    Content type: Research article Published on:

  3. Two closely related species Burkholderia mallei (Bm) and Burkholderia pseudomallei (Bp) are serious human health hazards and are potential bio-warfare agents, whereas another closely related species Burkholderia ...

    Authors: H Stanley Kim, Mark A Schell, Yan Yu, Ricky L Ulrich, Saul H Sarria, William C Nierman and David DeShazer
    Citation: BMC Genomics 2005 6:174
    Content type: Research article Published on:

  4. Acer truncatum Bunge is an economic, ecological, oil, and medicinal tree, and its kernel oil is rich in nervonic acid. It is crucial to explore the transcriptional expression patterns of genes affecting fatty aci...

    Authors: Liping Yan, Hongcheng Fang, Yan Liang, Yinhua Wang, Fei Ren, Xiaoman Xie and Dejun Wu
    Citation: BMC Genomics 2024 25:605
    Content type: Research Published on:

  5. Circular RNAs (circRNAs), a class of widely expressed endogenous regulatory RNAs, are involved in diverse physiological and developmental processes in eukaryotic cells. However, there have been no related stud...

    Authors: Xingguo Zhang, Xingli Ma, Longlong Ning, Zhongfeng Li, Kunkun Zhao, Ke Li, Jialin He and Dongmei Yin
    Citation: BMC Genomics 2019 20:653
    Content type: Research article Published on:

  6. Long non-coding RNAs (lncRNAs) play crucial roles in gene regulation at the transcriptional and post-transcriptional levels. LncRNAs are belonging to a large class of transcripts with ≥200 nt in length which d...

    Authors: Serafino M. A. Augustino, Qinglei Xu, Xueqin Liu, Siyuan Mi, Liangyu Shi, Yibing Liu, Hui Wen, Di Wang, Lei Liu, Qin Zhang and Ying Yu
    Citation: BMC Genomics 2020 21:780
    Content type: Research article Published on:

  7. Mismatched oligonucleotides are widely used on microarrays to differentiate specific from nonspecific hybridization. While many experiments rely on such oligos, the hybridization behavior of various degrees of...

    Authors: Michael Seringhaus, Joel Rozowsky, Thomas Royce, Ugrappa Nagalakshmi, Justin Jee, Michael Snyder and Mark Gerstein
    Citation: BMC Genomics 2008 9:635
    Content type: Methodology article Published on:

  8. Metabolic detoxification is one of the major mechanisms contributing to the development of resistance in mosquitoes, including the southern house mosquito, Culex quinquefasciatus. The three major detoxification s...

    Authors: Xinyue Huang, Phillip E. Kaufman, Giridhar N. Athrey, Chris Fredregill, Christina Alvarez, Vinaya Shetty and Michel A. Slotman
    Citation: BMC Genomics 2023 24:160
    Content type: Research Published on:

  9. The oriental fruit fly, Bactrocera dorsalis, is an important pest of fruit and vegetable crops throughout Asia, and is considered a high risk pest for establishment in the mainland United States. It is a member o...

    Authors: Scott M Geib, Bernarda Calla, Brian Hall, Shaobin Hou and Nicholas C Manoukis
    Citation: BMC Genomics 2014 15:942
    Content type: Research article Published on:

  10. Bacteroides thetaiotaomicron, a predominant member of the human gut microbiota, is characterized by its ability to utilize a wide variety of polysaccharides using the extensive saccharolytic machinery that is con...

    Authors: Dmitry A Ravcheev, Adam Godzik, Andrei L Osterman and Dmitry A Rodionov
    Citation: BMC Genomics 2013 14:873
    Content type: Research article Published on:

  11. The innate immune system is the first line of defense mechanisms protecting the host from invading pathogens such as bacteria and viruses. The innate immunity responses are triggered by recognition of prototyp...

    Authors: Ran Elkon, Chaim Linhart, Yonit Halperin, Yosef Shiloh and Ron Shamir
    Citation: BMC Genomics 2007 8:394
    Content type: Research article Published on:

  12. Species showing complex life cycles provide excellent opportunities to study the genetic associations between life cycle stages, as selective pressures may differ before and after metamorphosis. The European e...

    Authors: J. M. Pujolar, M. W. Jacobsen, D. Bekkevold, J. Lobón-Cervià, B. Jónsson, L. Bernatchez and M. M. Hansen
    Citation: BMC Genomics 2015 16:600
    Content type: Research article Published on:

  14. Radish exhibits significant variation in color, particularly in sprouts, leaves, petals, fleshy roots, and other tissues, displaying a range of hues such as green, white, red, purple, and black. Although exten...

    Authors: Yi Liu, Chenchen Wang, Haidong Chen, Guoqiang Dai, Qiushi Cuimu, Wenjie Shen, Liwei Gao, Bo Zhu, Changbin Gao, Lunlin Chen, Daozong Chen, Xueli Zhang and Chen Tan
    Citation: BMC Genomics 2024 25:624
    Content type: Research Published on:

  15. Expression of a large number of yeast genes is repressed by glucose. The zinc finger protein Mig1 is the main effector in glucose repression, but yeast also has two related proteins: Mig2 and Mig3. We have use...

    Authors: Jakub Orzechowski Westholm, Niklas Nordberg, Eva Murén, Adam Ameur, Jan Komorowski and Hans Ronne
    Citation: BMC Genomics 2008 9:601
    Content type: Research article Published on:

  16. The impossibility of closing the life cycle of the European eel (Anguilla anguilla) in captivity troubles the future of this critically endangered species. In addition, the European eel is a highly valued and dem...

    Authors: Christoffer Rozenfeld, Víctor García-Carpintero, Luz Pérez, Victor Gallego, Juan Germán Herranz-Jusdado, Helge Tveiten, Helge K. Johnsen, Romain Fontaine, Finn-Arne Weltzien, Joaquín Cañizares, Juan F. Asturiano and David S. Peñaranda
    Citation: BMC Genomics 2019 20:597
    Content type: Research article Published on:

  17. The histidine metabolism and transport (his) genes are controlled by a variety of RNA-dependent regulatory systems among diverse taxonomic groups of bacteria including T-box riboswitches in Firmicutes and Actinob...

    Authors: German A. Ashniev, Natalia V. Sernova, Aleksei E. Shevkoplias, Ivan D. Rodionov, Irina A. Rodionova, Alexey G. Vitreschak, Mikhail S. Gelfand and Dmitry A. Rodionov
    Citation: BMC Genomics 2022 23(Suppl 6):558
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 6

  18. Small quantities of RNA (1–4 μg total RNA) available from biological samples frequently require a single round of amplification prior to analysis, but current amplification strategies have limitations that may...

    Authors: Nicholas F Marko, Bryan Frank, John Quackenbush and Norman H Lee
    Citation: BMC Genomics 2005 6:27
    Content type: Methodology article Published on:

  19. Accompanied with rapid growth and high density aquaculture, gibel carp has been seriously threatened by Carassius auratus herpesvirus (CaHV) since 2012. In previous study, distinct CaHV resistances and immune res...

    Authors: Wei-Jia Lu, Fan-Xiang Gao, Yang Wang, Qi-Ya Zhang, Zhi Li, Xiao-Juan Zhang, Li Zhou and Jian-Fang Gui
    Citation: BMC Genomics 2019 20:432
    Content type: Research article Published on:

  20. Without intensive selection, the majority of bovine oocytes submitted to in vitro embryo production (IVP) fail to develop to the blastocyst stage. This is attributed partly to their maturation status and competen...

    Authors: Solomon Mamo, Fiona Carter, Patrick Lonergan, Cláudia LV Leal, Abdullah Al Naib, Paul McGettigan, Jai P Mehta, Alexander CO Evans and Trudee Fair
    Citation: BMC Genomics 2011 12:151
    Content type: Research article Published on:

  21. Haloxylon ammodendron (C. A. Mey.) is widely distributed across a range of habitats, including gravel desert, clay desert, fixed and semi-fixed sand, and saline land in Asian and African deserts. To date, no geno...

    Authors: Yan Long, Jingwen Zhang, Xinjie Tian, Shanshan Wu, Qiong Zhang, Jianping Zhang, Zhanhai Dang and Xin Wu Pei
    Citation: BMC Genomics 2014 15:1111
    Content type: Research article Published on:

  22. The MYB family is one of the most abundant transcription factor families in plants. MYB proteins are involved in plant development, abiotic stress tolerance, hormone signal transduction and disease resistance....

    Authors: Xianjun Peng, Hui Liu, Dan Wang and Shihua Shen
    Citation: BMC Genomics 2016 17:251
    Content type: Research article Published on:

  23. Plant natural products have been co-opted for millennia by humans for various uses such as flavor, fragrances, and medicines. These compounds often are only produced in relatively low amounts and are difficult...

    Authors: Wei Gao, Hai-Xi Sun, Hongbin Xiao, Guanghong Cui, Matthew L Hillwig, Alana Jackson, Xiao Wang, Ye Shen, Nan Zhao, Liangxiao Zhang, Xiu-Jie Wang, Reuben J Peters and Luqi Huang
    Citation: BMC Genomics 2014 15:73
    Content type: Research article Published on:

  24. The mesencephalic dopaminergic (mDA) cell system is composed of two major groups of projecting cells in the Substantia Nigra (SN) (A9 neurons) and the Ventral Tegmental Area (VTA) (A10 cells). Selective degene...

    Authors: Alice Grison, Silvia Zucchelli, Alice Urzì, Ilaria Zamparo, Dejan Lazarevic, Giovanni Pascarella, Paola Roncaglia, Alejandro Giorgetti, Paula Garcia-Esparcia, Christina Vlachouli, Roberto Simone, Francesca Persichetti, Alistair RR Forrest, Yoshihide Hayashizaki, Paolo Carloni, Isidro Ferrer…
    Citation: BMC Genomics 2014 15:729
    Content type: Research article Published on:

  25. As the only truly flying mammals, bats use their unique wing - consisting of four elongated digits (digits II-V) connected by membranes - to power their flight. In addition to the elongated digits II-V, the fo...

    Authors: Zhe Wang, Dong Dong, Binghua Ru, Rebecca L Young, Naijian Han, Tingting Guo and Shuyi Zhang
    Citation: BMC Genomics 2010 11:619
    Content type: Research article Published on:

  26. The achievement of sustainable feeding practices in aquaculture by reducing the reliance on wild-captured fish, via replacement of fish-based feed with plant-based feed, is impeded by the poor growth response ...

    Authors: Mukundh N. Balasubramanian, Stephane Panserat, Mathilde Dupont-Nivet, Edwige Quillet, Jerome Montfort, Aurelie Le Cam, Francoise Medale, Sadasivam J. Kaushik and Inge Geurden
    Citation: BMC Genomics 2016 17:449
    Content type: Research article Published on:

  27. Anthracnose (Colletotrichum gloeosporioides) is a major limiting factor in the production of yam (Dioscorea spp.) worldwide. Availability of high quality sequence information is necessary for designing molecular ...

    Authors: Satya S Narina, Ramesh Buyyarapu, Kameswara Rao Kottapalli, Alieu M Sartie, Mohamed I Ali, Asiedu Robert, Mignouna JD Hodeba, Brian L Sayre and Brian E Scheffler
    Citation: BMC Genomics 2011 12:100
    Content type: Research article Published on:

  28. Understanding viral infection of the olfactory epithelium is essential because the olfactory nerve is an important route of entry for viruses to the central nervous system. Specialized chemosensory epithelial ...

    Authors: B. Dnate’ Baxter, Eric D. Larson, Laetitia Merle, Paul Feinstein, Arianna Gentile Polese, Andrew N. Bubak, Christy S. Niemeyer, James Hassell Jr, Doug Shepherd, Vijay R. Ramakrishnan, Maria A. Nagel and Diego Restrepo
    Citation: BMC Genomics 2021 22:224
    Content type: Research article Published on:

  29. Warm winter and hot spring attributed to global warming affected floral development and may induce floral abortion, resulted in poor flowering in litchi. To identify genes potentially involved in litchi floral...

    Authors: Hao Liu, Congcong Wang, Houbin Chen and Biyan Zhou
    Citation: BMC Genomics 2019 20:127
    Content type: Research article Published on:

  30. African weakly-electric fishes of the family Mormyridae are able to produce and perceive weak electric signals (typically less than one volt in amplitude) owing to the presence of a specialized, muscle-derived...

    Authors: Francesco Lamanna, Frank Kirschbaum, Isabelle Waurick, Christoph Dieterich and Ralph Tiedemann
    Citation: BMC Genomics 2015 16:668
    Content type: Research article Published on:

  31. Acacia auriculiformis × Acacia mangium hybrids are commercially important trees for the timber and pulp industry in Southeast Asia. Increasing pulp yield while reducing pulping costs are major objectives of tree ...

    Authors: Melissa ML Wong, Charles H Cannon and Ratnam Wickneswari
    Citation: BMC Genomics 2011 12:342
    Content type: Research article Published on:

  32. Numerous different types of variations can occur in DNA and have diverse effects and consequences. The Variation Ontology (VariO) was developed for systematic descriptions of variations and their effects at DN...

    Authors: Mauno Vihinen
    Citation: BMC Genomics 2018 19:974
    Content type: Review Published on:

  33. Trypanosoma brucei subspecies infect humans and animals in sub-Saharan Africa. This early diverging eukaryote shows many novel features in basic biological processes, including the use of polycistronic transcript...

    Authors: Bryan C Jensen, Gowthaman Ramasamy, Elton J R Vasconcelos, Nicholas T Ingolia, Peter J Myler and Marilyn Parsons
    Citation: BMC Genomics 2014 15:911
    Content type: Research article Published on:

  34. miRNAs are short single-stranded non-coding RNAs involved in post-transcriptional gene regulation that play a major role in normal biological functions and diseases. Little is currently known about how express...

    Authors: Michael J Parsons, Christina Grimm, Jose L Paya-Cano, Cathy Fernandes, Lin Liu, Vivek M Philip, Elissa J Chesler, Wilfried Nietfeld, Hans Lehrach and Leonard C Schalkwyk
    Citation: BMC Genomics 2012 13:476
    Content type: Research article Published on:

  36. The dried stem of Cistanche, is a famous Chinese traditional medicine. The main active pharmacodynamic components are phenylethanol glycosides (PhGs). Cistanche tubulosa produces higher level of PhGs in its stems...

    Authors: Lei Hou, Guanghui Li, Qingliang Chen, JinJin Zhao, Jiaowen Pan, Ruxia Lin, Xiujin Zhu, Pengfei Wang and Xingjun Wang
    Citation: BMC Genomics 2022 23:698
    Content type: Research Published on:

  37. In culturing normal diploid cells, senescence may either happen naturally, in the form of replicative senescence, or it may be a consequence of external challenges such as oxidative stress. Here we present a c...

    Authors: Kamil C. Kural, Neetu Tandon, Mikhail Skoblov, Olga V. Kel-Margoulis and Ancha V. Baranova
    Citation: BMC Genomics 2016 17(Suppl 14):1030
    Content type: Research Published on:

    This article is part of a Supplement: Volume 17 Supplement 14

  38. The protist Plasmodiophora brassicae is a biotrophic soil-borne pathogen that causes clubroot on Brassica crops worldwide. Clubroot disease is a serious threat to the 8 M ha of canola (Brassica napus) grown annua...

    Authors: Mingguang Chu, Tao Song, Kevin C Falk, Xingguo Zhang, Xunjia Liu, Adrian Chang, Rachid Lahlali, Linda McGregor, Bruce D Gossen, Fengqun Yu and Gary Peng
    Citation: BMC Genomics 2014 15:1166
    Content type: Research article Published on:

  39. Red-flesh fruit is absent from common sweet orange varieties, but is more preferred by consumers due to its visual attraction and nutritional properties. Our previous researches on a spontaneous red-flesh muta...

    Authors: Qiang Xu, Yuanlong Liu, Andan Zhu, Xiaomeng Wu, Junli Ye, Keqin Yu, Wenwu Guo and Xiuxin Deng
    Citation: BMC Genomics 2010 11:246
    Content type: Research article Published on:

  40. The major pathogenesis associated with Fasciola hepatica infection results from the extensive tissue damage caused by the tunnelling and feeding activity of immature flukes during their migration, growth and deve...

    Authors: Krystyna Cwiklinski, Mark W. Robinson, Sheila Donnelly and John P. Dalton
    Citation: BMC Genomics 2021 22:46
    Content type: Research article Published on:

  41. Caecilians, with a discrete lifestyle, are the least explored group of amphibians. Though with distinct traits, many aspects of their biology are poorly investigated. Obtaining the caecilian genomic sequences ...

    Authors: Riga Wu, Qingfeng Liu, Shaoquan Meng, Peng Zhang and Dan Liang
    Citation: BMC Genomics 2015 16:468
    Content type: Research article Published on:

  42. A long term research goal of venomics, of applied importance for improving current antivenom therapy, but also for drug discovery, is to understand the pharmacological potential of venoms. Individually or comb...

    Authors: Jordi Durban, Paula Juárez, Yamileth Angulo, Bruno Lomonte, Marietta Flores-Diaz, Alberto Alape-Girón, Mahmood Sasa, Libia Sanz, José M Gutiérrez, Joaquín Dopazo, Ana Conesa and Juan J Calvete
    Citation: BMC Genomics 2011 12:259
    Content type: Research article Published on:

  43. The molecular basis of compensatory growth in monogastric animals has not yet been fully explored. Herewith, in this study we aim to determine changes in the pig skeletal muscle transcriptome profile during co...

    Authors: Maria Ballester, Marcel Amills, Olga González-Rodríguez, Tainã F. Cardoso, Mariam Pascual, Rayner González-Prendes, Núria Panella-Riera, Isabel Díaz, Joan Tibau and Raquel Quintanilla
    Citation: BMC Genomics 2018 19:682
    Content type: Research article Published on:

  44. Abdominal fat is the major adipose tissue in chickens. The growth status of abdominal fat during postnatal late development ultimately affects meat yield and quality in chickens. MicroRNAs (miRNAs) are endogen...

    Authors: Yi Chen, Yinli Zhao, Wenjiao Jin, Yuanfang Li, Yanhua Zhang, Xuejie Ma, Guirong Sun, Ruili Han, Yadong Tian, Hong Li, Xiangtao Kang and Guoxi Li
    Citation: BMC Genomics 2019 20:778
    Content type: Research article Published on:

  45. The phenomenon of sexual reproduction characterizes nearly all eukaryotes, with anisogamy being the most prevalent form of gamete discrimination. Since dimorphic gametes most likely descend from equal-sized sp...

    Authors: Agnieszka P Lipinska, Sofie D’hondt, Els JM Van Damme and Olivier De Clerck
    Citation: BMC Genomics 2013 14:909
    Content type: Research article Published on:

  46. Developing high yielding varieties is a major challenge for breeders tackling the challenges of climate change in agriculture. The panicle (inflorescence) architecture of rice is one of the key components of y...

    Authors: Hélène Adam, Andrés Gutiérrez, Marie Couderc, François Sabot, Fabrice Ntakirutimana, Julien Serret, Julie Orjuela, James Tregear, Stefan Jouannic and Mathias Lorieux
    Citation: BMC Genomics 2023 24:587
    Content type: Research Published on:

  47. Salamanders regenerate their limbs after amputation. However, the molecular mechanism of this unique regeneration remains unclear. In this study, isobaric tags for relative and absolute quantification (iTRAQ) ...

    Authors: Jie Tang, Yuan Yu, Hanxue Zheng, Lu Yin, Mei Sun, Wenjun Wang, Jihong Cui, Wenguang Liu, Xin Xie and Fulin Chen
    Citation: BMC Genomics 2017 18:750
    Content type: Research article Published on:

  48. Neutral lipid storage is enhanced by nitrogen deprivation (ND) in numbers of green microalgal species. However, little is known about the metabolic pathways whose transcription levels are most significantly al...

    Authors: Deying Sun, Jiaqi Zhu, Lei Fang, Xin Zhang, Yvonne Chow and Jianhua Liu
    Citation: BMC Genomics 2013 14:715
    Content type: Research article Published on:

  49. Researches have been conducted for the identification of differentially expressed genes (DEGs) by generating and mining of cDNA expressed sequence tags (ESTs) for more than a decade. Although the availability ...

    Authors: Timothy H Wu, Lichieh J Chu, Jian-Chiao Wang, Ting-Wen Chen, Yin-Jing Tien, Wen-Chang Lin and Wailap V Ng
    Citation: BMC Genomics 2012 13(Suppl 7):S12
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 13 Supplement 7

  50. Biopsies taken from individual tumours exhibit extensive differences in their cellular composition due to the inherent heterogeneity of cancers and vagaries of sample collection. As a result genes expressed in...

    Authors: Tamasin N Doig, David A Hume, Thanasis Theocharidis, John R Goodlad, Christopher D Gregory and Tom C Freeman
    Citation: BMC Genomics 2013 14:469
    Content type: Research article Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • Citation Impact 2023
    Journal Impact Factor: 3.5
    5-year Journal Impact Factor: 4.1
    Source Normalized Impact per Paper (SNIP): 1.083
    SCImago Journal Rank (SJR): 1.047

    Speed 2023
    Submission to first editorial decision (median days): 21
    Submission to acceptance (median days): 137

    Usage 2023
    Downloads: 7,167,242
    Altmetric mentions: 4,454

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us