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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 75 of 128

  1. RNA viruses have high mutation rates and exist within their hosts as large, complex and heterogeneous populations, comprising a spectrum of related but non-identical genome sequences. Next generation sequencin...

    Authors: Richard J Orton, Caroline F Wright, Marco J Morelli, David J King, David J Paton, Donald P King and Daniel T Haydon
    Citation: BMC Genomics 2015 16:229
    Content type: Research article Published on:

  2. Giant viruses in the genus Chlorovirus (family Phycodnaviridae) infect eukaryotic green microalgae. The prototype member of the genus, Paramecium bursaria chlorella virus 1, was sequenced more than 15 years ago, ...

    Authors: Adrien Jeanniard, David D Dunigan, James R Gurnon, Irina V Agarkova, Ming Kang, Jason Vitek, Garry Duncan, O William McClung, Megan Larsen, Jean-Michel Claverie, James L Van Etten and Guillaume Blanc
    Citation: BMC Genomics 2013 14:158
    Content type: Research article Published on:

  3. Zinc finger homeodomain (ZHD) protein is a plant-specific transcription factor and a potential regulator of phosphoenolpyruvate carboxylase (PEPCase)-coding genes, and it also participates in plant growth regu...

    Authors: Kai He, Chunxin Li, Zhenyue Zhang, Lifeng Zhan, Chunlong Cong, Depeng Zhang and Hua Cai
    Citation: BMC Genomics 2022 23:150
    Content type: Research Published on:

  4. Microarray analysis provides a powerful approach to identify gene expression alterations following transplantation. In patients the heterogeneity of graft specimens, co-morbidity, co-medications and the challe...

    Authors: Bayram Edemir, Sunil M Kurian, Martin Eisenacher, Detlef Lang, Carsten Müller-Tidow, Gert Gabriëls, Daniel R Salomon and Eberhard Schlatter
    Citation: BMC Genomics 2008 9:71
    Content type: Research article Published on:

  5. Glucocorticoids such as prednisolone and dexamethasone are critical drugs used in multi-agent chemotherapy protocols used to treat acute lymphoblastic leukemia (ALL), and response to glucocorticoids is highly ...

    Authors: Vivek A Bhadri, Mark J Cowley, Warren Kaplan, Toby N Trahair and Richard B Lock
    Citation: BMC Genomics 2011 12:565
    Content type: Research article Published on:

  6. Curculigo latifolia is a perennial plant endogenous to Southeast Asia whose fruits contain the taste-modifying protein neoculin, which binds to sweet receptors and makes sour fruits taste sweet. Although similar ...

    Authors: Satoshi Okubo, Kaede Terauchi, Shinji Okada, Yoshikazu Saito, Takao Yamaura, Takumi Misaka, Ken-ichiro Nakajima, Keiko Abe and Tomiko Asakura
    Citation: BMC Genomics 2021 22:347
    Content type: Research article Published on:

  8. Currently, in the era of post-genomics, immunology is facing a challenging problem to translate mutant phenotypes into gene functions based on high-throughput data, while taking into account the classification...

    Authors: Masahiro Ono, Reiko J Tanaka and Manabu Kano
    Citation: BMC Genomics 2014 15:1028
    Content type: Methodology article Published on:

  9. Microtus fortis is a non-permissive host of Schistosoma japonicum. It has natural resistance against schistosomes, although the precise resistance mechanisms remain unclear. The paucity of genetic information for...

    Authors: Yuan Hu, Yuxin Xu, Weiyuan Lu, Zhongying Yuan, Hong Quan, Yujuan Shen and Jianping Cao
    Citation: BMC Genomics 2014 15:417
    Content type: Research article Published on:

  10. Next-Generation Sequencing (NGS) is revolutionizing molecular epidemiology by providing new approaches to undertake whole genome sequencing (WGS) in diagnostic settings for a variety of human and veterinary pa...

    Authors: Grace Logan, Graham L Freimanis, David J King, Begoña Valdazo-González, Katarzyna Bachanek-Bankowska, Nicholas D Sanderson, Nick J Knowles, Donald P King and Eleanor M Cottam
    Citation: BMC Genomics 2014 15:828
    Content type: Methodology article Published on:

  12. The insect order Neuroptera encompasses more than 5,700 described species. To date, only three neuropteran mitochondrial genomes have been fully and one partly sequenced. Current knowledge on neuropteran mitoc...

    Authors: Enrico Negrisolo, Massimiliano Babbucci and Tomaso Patarnello
    Citation: BMC Genomics 2011 12:221
    Content type: Research article Published on:

  14. In bacteria, the weak correlations at the genome scale between mRNA and protein levels suggest that not all mRNAs are translated with the same efficiency. To experimentally explore mRNA translational level reg...

    Authors: Flora Picard, Hélène Milhem, Pascal Loubière, Béatrice Laurent, Muriel Cocaign-Bousquet and Laurence Girbal
    Citation: BMC Genomics 2012 13:528
    Content type: Research article Published on:

  15. Recombination rates vary widely across the human genome, but little of that variation is correlated with known DNA sequence features. The genome contains more than one million Alu mobile element insertions, and t...

    Authors: David J Witherspoon, W Scott Watkins, Yuhua Zhang, Jinchuan Xing, Whitney L Tolpinrud, Dale J Hedges, Mark A Batzer and Lynn B Jorde
    Citation: BMC Genomics 2009 10:530
    Content type: Research article Published on:

  16. Toxoplasma gondii is a widespread protozoan parasite of animals that causes zoonotic disease in humans. Three clonal variants predominate in North America and Europe, while South American strains are genetically ...

    Authors: Asis Khan, Jahangheer S Shaik, Michael Behnke, Qiuling Wang, Jitender P Dubey, Hernan A Lorenzi, James W Ajioka, Benjamin M Rosenthal and L David Sibley
    Citation: BMC Genomics 2014 15:1168
    Content type: Research article Published on:

  18. Coeliac disease is a multifactorial inflammatory disorder of the intestine caused by ingestion of gluten in genetically susceptible individuals. Genes within the HLA-DQ locus are considered to contribute some ...

    Authors: Suzanne Bracken, Greg Byrne, Jacinta Kelly, John Jackson and Conleth Feighery
    Citation: BMC Genomics 2008 9:377
    Content type: Research article Published on:

  19. Avian influenza virus (AIV) outbreaks are worldwide threats to both poultry and humans. Our previous study suggested microRNAs (miRNAs) play significant roles in the regulation of host response to AIV infectio...

    Authors: Ying Wang, Vinayak Brahmakshatriya, Blanca Lupiani, Sanjay M Reddy, Benjamin Soibam, Ashley L Benham, Preethi Gunaratne, Hsiao-ching Liu, Nares Trakooljul, Nancy Ing, Ron Okimoto and Huaijun Zhou
    Citation: BMC Genomics 2012 13:278
    Content type: Research article Published on:

  20. The root architecture of grafted apple (Malus spp.) is affected by various characteristics of the scions. To provide information on the molecular mechanisms underlying this influence, we examined root transcripto...

    Authors: Guofang Li, Juanjuan Ma, Ming Tan, Jiangping Mao, Na An, Guangli Sha, Dong Zhang, Caiping Zhao and Mingyu Han
    Citation: BMC Genomics 2016 17:150
    Content type: Research article Published on:

  21. Understanding ethanol tolerance in microorganisms is important for the improvement of bioethanol production. Hence, we performed parallel-evolution experiments using Escherichia coli cells under ethanol stress to...

    Authors: Takaaki Horinouchi, Kuniyasu Tamaoka, Chikara Furusawa, Naoaki Ono, Shingo Suzuki, Takashi Hirasawa, Tetsuya Yomo and Hiroshi Shimizu
    Citation: BMC Genomics 2010 11:579
    Content type: Research article Published on:

  22. The mammalian oviduct is a complex, fibromuscular organ known for its role in orchestrating a series of timely and dynamic changes to suitably support early embryogenesis. Climate change-induced heat stress (H...

    Authors: Nico G. Menjivar, Ahmed Gad, Riley E. Thompson, Mindy A. Meyers, Fiona K. Hollinshead and Dawit Tesfaye
    Citation: BMC Genomics 2023 24:646
    Content type: Research Published on:

  23. Serratia sp. ATCC 39006 (S39006) is a Gram-negative enterobacterium that is virulent in plant and animal models. It produces a red-pigmented trypyrrole secondary metabolite, prodigiosin (Pig), and a carbapenem an...

    Authors: Nabil M Wilf, Adam J Reid, Joshua P Ramsay, Neil R Williamson, Nicholas J Croucher, Laurent Gatto, Svenja S Hester, David Goulding, Lars Barquist, Kathryn S Lilley, Robert A Kingsley, Gordon Dougan and George PC Salmond
    Citation: BMC Genomics 2013 14:822
    Content type: Research article Published on:

  24. Redox homeostasis is essential to sustain metabolism and growth. We recently reported that yeast cells meet a gradual increase in imposed NADPH demand by progressively increasing flux through the pentose phosp...

    Authors: Magalie Celton, Isabelle Sanchez, Anne Goelzer, Vincent Fromion, Carole Camarasa and Sylvie Dequin
    Citation: BMC Genomics 2012 13:317
    Content type: Research article Published on:

  25. Pathogenic bacteria have evolved various strategies to counteract host defences. They are also exposed to environments that are undergoing constant changes. Hence, in order to survive, bacteria must adapt them...

    Authors: Pritha Ghosh and Ramanathan Sowdhamini
    Citation: BMC Genomics 2017 18:658
    Content type: Research article Published on:

  26. The genetic mechanisms underlying hemangioblastoma development are still largely unknown. We used high-resolution single nucleotide polymorphism microarrays and droplet digital PCR analysis to detect copy numb...

    Authors: Ruty Mehrian-Shai, Michal Yalon, Itai Moshe, Iris Barshack, Dvorah Nass, Jasmine Jacob, Chen Dor, Juergen K. V. Reichardt, Shlomi Constantini and Amos Toren
    Citation: BMC Genomics 2016 17:56
    Content type: Research article Published on:

  28. South Pacific Gyre (SPG) is the largest and clearest gyre in the world, where the concentration of surface chlorophyll a and primary production are extremely low. Aquimarina longa SW024T was isolated from surface...

    Authors: Tingting Xu, Min Yu, Heyu Lin, Zenghu Zhang, Jiwen Liu and Xiao-Hua Zhang
    Citation: BMC Genomics 2015 16:772
    Content type: Research article Published on:

  29. The σ54 subunit controls a unique class of promoters in bacteria. Such promoters, without exception, require enhancer binding proteins (EBPs) for transcription initiation. Desulfovibrio vulgaris Hildenborough, a ...

    Authors: Alexey E. Kazakov, Lara Rajeev, Amy Chen, Eric G. Luning, Inna Dubchak, Aindrila Mukhopadhyay and Pavel S. Novichkov
    Citation: BMC Genomics 2015 16:919
    Content type: Research article Published on:

  30. Rubber tree (Hevea brasiliensis) is an important industrial crop cultivated in tropical areas for natural rubber production. Treatment of the bark of rubber trees with ehephon (an ethylene releaser) has been a ro...

    Authors: Jin-Ping Liu, Yu-Fen Zhuang, Xiu-Li Guo and Yi-Jian Li
    Citation: BMC Genomics 2016 17:257
    Content type: Research article Published on:

  31. Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is the most devastating pathogen of soybean. Many gene expression profiling studies have been conducted to investigate the responses of soybean to the inf...

    Authors: Jinrong Wan, Tri Vuong, Yongqing Jiao, Trupti Joshi, Hongxin Zhang, Dong Xu and Henry T Nguyen
    Citation: BMC Genomics 2015 16:148
    Content type: Research article Published on:

  32. The Gram-negative, xylem-limited phytopathogenic bacterium Xylella fastidiosa is responsible for causing economically important diseases in grapevine, citrus and many other plant species. Despite its economic imp...

    Authors: Harshavardhan Doddapaneni, Jiqiang Yao, Hong Lin, M Andrew Walker and Edwin L Civerolo
    Citation: BMC Genomics 2006 7:225
    Content type: Research article Published on:

  33. Damage to the adult central nervous system often leads to long-term disruptions in function due to the limited capacity for neurological recovery. The central nervous system of the Mediterranean field cricket, Gr...

    Authors: Meera P. Prasad, Donald K. E. Detchou, Felicia Wang, Lisa L. Ledwidge, Sarah E. Kingston and Hadley Wilson Horch
    Citation: BMC Genomics 2021 22:742
    Content type: Research Published on:

  34. The cryptochromes (CRY) are specific blue light receptors of plants and animals, which play crucial roles in physiological processes of plant growth, development, and stress tolerance.

    Authors: Chaochen Huang, Pengbo Li, Junfeng Cao, Zishou Zheng, Jinquan Huang, Xiufang Zhang, Xiaoxia Shangguan, Lingjian Wang and Zhiwen Chen
    Citation: BMC Genomics 2022 23:231
    Content type: Research Published on:

  35. There are an exceedingly large number of sequence variants discovered through whole genome sequencing in most populations, including cattle. Deciphering which of these affect complex traits is a major challeng...

    Authors: Lambros T. Koufariotis, Yi-Ping Phoebe Chen, Paul Stothard and Ben J. Hayes
    Citation: BMC Genomics 2018 19:237
    Content type: Research article Published on:

  36. Recently, a new livestock-associated methicillin-resistant Staphylococcus aureus (MRSA) Sequence Type 398 (ST398) isolate has emerged worldwide. Although there have been reports of invasive disease in humans, MRS...

    Authors: Maarten J Schijffelen, CH Edwin Boel, Jos AG van Strijp and Ad C Fluit
    Citation: BMC Genomics 2010 11:376
    Content type: Research article Published on:

  37. B-thalassaemia and sickle cell disease (SCD) are two of the most common monogenic diseases that are found in many populations worldwide. In both disorders the clinical severity is highly variable, with the per...

    Authors: Pavlos Fanis, Ioanna Kousiappa, Marios Phylactides and Marina Kleanthous
    Citation: BMC Genomics 2014 15:108
    Content type: Methodology article Published on:

  38. Nematode-trapping fungi are a unique group of organisms that can capture nematodes using sophisticated trapping structures. The genome of Drechslerella stenobrocha, a constricting-ring-forming fungus, has been se...

    Authors: Keke Liu, Weiwei Zhang, Yiling Lai, Meichun Xiang, Xiuna Wang, Xinyu Zhang and Xingzhong Liu
    Citation: BMC Genomics 2014 15:114
    Content type: Research article Published on:

  39. Milling yield and eating quality are two important grain quality traits in rice. To identify the genes involved in these two traits, we performed a deep transcriptional analysis of developing seeds using both ...

    Authors: R C Venu, M V Sreerekha, Kan Nobuta, André Beló, Yuese Ning, Gynheung An, Blake C Meyers and Guo-Liang Wang
    Citation: BMC Genomics 2011 12:190
    Content type: Research article Published on:

  40. Geese exhibit relatively low reproductive performance, and follicular atresia is an important factor that restricts the egg production of geese. Systematic analysis of the regulation of follicle atresia in gee...

    Authors: Wanli Yang, Xingyong Chen, Zhengquan Liu, Yutong Zhao, Yufei Chen and Zhaoyu Geng
    Citation: BMC Genomics 2023 24:24
    Content type: Research Published on:

  41. Wheat is an allopolyploid plant that harbors a huge, complex genome. Therefore, accumulation of expressed sequence tags (ESTs) for wheat is becoming particularly important for functional genomics and molecular...

    Authors: Kanako Kawaura, Keiichi Mochida, Akiko Enju, Yasushi Totoki, Atsushi Toyoda, Yoshiyuki Sakaki, Chikatoshi Kai, Jun Kawai, Yoshihide Hayashizaki, Motoaki Seki, Kazuo Shinozaki and Yasunari Ogihara
    Citation: BMC Genomics 2009 10:271
    Content type: Research article Published on:

  42. An enduring question surrounding sex chromosome evolution is whether effective hemizygosity in the heterogametic sex leads inevitably to dosage compensation of sex-linked genes, and whether this compensation h...

    Authors: Nathaniel K Jue, Michael B Murphy, Seth D Kasowitz, Sohaib M Qureshi, Craig J Obergfell, Sahar Elsisi, Robert J Foley, Rachel J O’Neill and Michael J O’Neill
    Citation: BMC Genomics 2013 14:150
    Content type: Research article Published on:

  43. Untargeted metabolomics and proteomics were employed to investigate the intracellular response of yak rumen epithelial cells (YRECs) to conditions mimicking subacute rumen acidosis (SARA) etiology, including e...

    Authors: JunMei Wang, Liyuan Shi, Xiaohong Zhang, Rui Hu, Ziqi Yue, Huawei Zou, Quanhui Peng, Yahui Jiang and Zhisheng Wang
    Citation: BMC Genomics 2024 25:394
    Content type: Research Published on:

  44. Alcohol abuse and alcoholism are significant public health problems, but the genetic basis for individual variation in alcohol sensitivity remains poorly understood. Drosophila melanogaster presents a powerful mo...

    Authors: Tatiana V. Morozova, Wen Huang, Victoria A. Pray, Thomas Whitham, Robert R. H. Anholt and Trudy F. C. Mackay
    Citation: BMC Genomics 2015 16:865
    Content type: Research article Published on:

  45. At later stages of folliculogenesis, the mammalian ovarian follicle contains layers of epithelial granulosa cells surrounding an antral cavity. During follicle development granulosa cells replicate, secrete ho...

    Authors: Nicholas Hatzirodos, Helen F Irving-Rodgers, Katja Hummitzsch, Margaret L Harland, Stephanie E Morris and Raymond J Rodgers
    Citation: BMC Genomics 2014 15:24
    Content type: Research article Published on:

  46. Carbon and nitrogen fixation are essential pathways for autotrophic bacteria living in extreme environments. These bacteria can use carbon dioxide directly from the air as their sole carbon source and can use ...

    Authors: Gloria Levicán, Juan A Ugalde, Nicole Ehrenfeld, Alejandro Maass and Pilar Parada
    Citation: BMC Genomics 2008 9:581
    Content type: Research article Published on:

  47. Infection by infectious laryngotracheitis virus (ILTV; gallid herpesvirus 1) causes acute respiratory diseases in chickens often with high mortality. To better understand host-ILTV interactions at the host transc...

    Authors: Jeong Yoon Lee, Joon Jin Song, Ann Wooming, Xianyao Li, Huaijun Zhou, Walter G Bottje and Byung-Whi Kong
    Citation: BMC Genomics 2010 11:445
    Content type: Research article Published on:

  48. The behaviors and ontogeny of Aedes aegypti are closely related to the spread of diseases caused by dengue (DENV), chikungunya (CHIKV), Zika (ZIKV), and yellow fever (YFV) viruses. During the life cycle, Ae. aegy...

    Authors: Zhinan Lin, Yuqi Huang, Sihan Liu, Qiwen Huang, Biliang Zhang, Tianpeng Wang, Ziding Zhang, Xiaowei Zhu, Chenghong Liao and Qian Han
    Citation: BMC Genomics 2023 24:301
    Content type: Research Published on:

  49. Ochromonas is a genus of mixotrophic chrysophytes that is found ubiquitously in many aquatic environments. Species in this genus can be important consumers of bacteria but vary in thei...

    Authors: Alle A. Y. Lie, Zhenfeng Liu, Ramon Terrado, Avery O. Tatters, Karla B. Heidelberg and David A. Caron
    Citation: BMC Genomics 2017 18:163
    Content type: Research article Published on:

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BMC Genomics

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