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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Commercial Atlantic halibut (Hippoglossus hippoglossus) farming is restricted by variable oocyte quality, slow growth, and early maturation of male fish. Maternally transferred components regulate early developme...

    Authors: Maren Mommens, Jorge MO Fernandes, Knut Erik Tollefsen, Ian A Johnston and Igor Babiak
    Citation: BMC Genomics 2014 15:829
    Content type: Research article Published on:

  2. Heterokont algae form a monophyletic group within the stramenopile branch of the tree of life. These organisms display wide morphological diversity, ranging from minute unicells to massive, bladed forms. Surpr...

    Authors: Rose Ann Cattolico, Michael A Jacobs, Yang Zhou, Jean Chang, Melinda Duplessis, Terry Lybrand, John McKay, Han Chuan Ong, Elizabeth Sims and Gabrielle Rocap
    Citation: BMC Genomics 2008 9:211
    Content type: Research article Published on:

  3. Pseudomonas aeruginosa is an environmentally ubiquitous Gram-negative bacterium and important opportunistic human pathogen, causing severe chronic respiratory infections in patients wi...

    Authors: John J. Varga, Mariette Barbier, Xavier Mulet, Piotr Bielecki, Jennifer A. Bartell, Joshua P. Owings, Inmaculada Martinez-Ramos, Lauren E. Hittle, Michael R. Davis Jr., F. Heath Damron, George W. Liechti, Jacek PuchaÅ‚ka, Vitor A. P. Martins dos Santos, Robert K. Ernst, Jason A. Papin, Sebastian Albertí…
    Citation: BMC Genomics 2015 16:883
    Content type: Research article Published on:

  4. The deep ocean is characterized by low temperatures, high hydrostatic pressures, and low concentrations of organic matter. While these conditions likely select for distinct genomic characteristics within proka...

    Authors: Logan M. Peoples, Than S. Kyaw, Juan A. Ugalde, Kelli K. Mullane, Roger A. Chastain, A. Aristides Yayanos, Masataka Kusube, Barbara A. Methé and Douglas H. Bartlett
    Citation: BMC Genomics 2020 21:692
    Content type: Research article Published on:

  5. Lungworms of the genus Dictyocaulus (family Dictyocaulidae) are parasitic nematodes of major economic importance. They cause pathological effects and clinical disease in various ruminant hosts, particularly in yo...

    Authors: Shoba Ranganathan, Shivashankar H Nagaraj, Min Hu, Christina Strube, Thomas Schnieder and Robin B Gasser
    Citation: BMC Genomics 2007 8:311
    Content type: Research article Published on:

  6. Without knowledge of their genomic sequences, it is impossible to make functional models of the bacteria that make up human and animal microbiota. Unfortunately, the vast majority of publicly available genomes...

    Authors: Luis Acuña-Amador, Aline Primot, Edouard Cadieu, Alain Roulet and Frédérique Barloy-Hubler
    Citation: BMC Genomics 2018 19:54
    Content type: Research article Published on:

  7. Secondary metabolites as natural products from endophytic fungi are important sources of pharmaceuticals. However, there is currently little understanding of endophytic fungi at the omics levels about their po...

    Authors: Jin-Tao Cheng, Fei Cao, Xin-Ai Chen, Yong-Quan Li and Xu-Ming Mao
    Citation: BMC Genomics 2020 21:424
    Content type: Research article Published on:

  8. Tea plant is one of the most important non-alcoholic beverage crops worldwide. While potassium (K+) is an essential macronutrient and greatly affects the growth and development of plants, the molecular mechanism ...

    Authors: Tianyuan Yang, Xin Lu, Yan Wang, Yunxia Xie, Jingzhen Ma, Xunmin Cheng, Enhua Xia, Xiaochun Wan and Zhaoliang Zhang
    Citation: BMC Genomics 2020 21:556
    Content type: Research article Published on:

  9. Genome-wide association studies (GWAS) are utilized in cattle to identify regions or genetic variants associated with phenotypes of interest, and thus, to identify design strategies that allow for the increase...

    Authors: Luis Orlando Duitama Carreño, Matilde da Conceição Pessoa, Rafael Espigolan, Luciana Takada, Tiago Bresolin, Ligia Cavani, Fernando Baldi, Roberto Carvalheiro, Lucia Galvão de Albuquerque and Ricardo da Fonseca
    Citation: BMC Genomics 2019 20:150
    Content type: Research article Published on:

  10. Two major mycoparasitic lineages, the family Hypocreaceae and the genus Tolypocladium, exist within the fungal order, Hypocreales. Peptaibiotics are a group of secondary metabolites almost exclusively described f...

    Authors: C. Alisha Quandt, Kathryn E. Bushley and Joseph W. Spatafora
    Citation: BMC Genomics 2015 16:553
    Content type: Research article Published on:

  11. Leptospirosis is an emerging infectious disease worldwide that can cause high morbidity and mortality rates in humans and animals. The causative spirochetes have reservoirs in mammalian hosts, but there has be...

    Authors: Alongkorn Kurilung, Chantisa Keeratipusana, Prapat Suriyaphol, David J. Hampson and Nuvee Prapasarakul
    Citation: BMC Genomics 2019 20:168
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2019 20:246

  12. Abscisic acid (ABA), a key phytohormone that controls plant growth and stress responses, is sensed by the pyrabactin resistance 1(PYR1)/PYR1-like (PYL)/regulatory components of the ABA receptor (RCAR) family o...

    Authors: Shashank Kumar Yadav, Vinjamuri Venkata Santosh Kumar, Rakesh Kumar Verma, Pragya Yadav, Ankit Saroha, Dhammaprakash Pandhari Wankhede, Bhupendra Chaudhary and Viswanathan Chinnusamy
    Citation: BMC Genomics 2020 21:676
    Content type: Research article Published on:

  13. Understanding how pathogens respond to antimicrobial peptides, and how this compares to currently available antibiotics, is crucial for optimizing antimicrobial therapy. Staphylococcus aureus has several known re...

    Authors: Milla Pietiäinen, Patrice François, Hanne-Leena Hyyryläinen, Manuela Tangomo, Vera Sass, Hans-Georg Sahl, Jacques Schrenzel and Vesa P Kontinen
    Citation: BMC Genomics 2009 10:429
    Content type: Research article Published on:

  14. Yersinia enterocolitica strains responsible for mild gastroenteritis in humans are very diverse with respect to their metabolic and virulence properties. Strain W22703 (biotype 2, serotype O:9) was recently ident...

    Authors: Thilo M Fuchs, Katharina Brandt, Mandy Starke and Thomas Rattei
    Citation: BMC Genomics 2011 12:168
    Content type: Research article Published on:

  15. We have recently released a comprehensive, manually curated database of mammalian protein complexes called CORUM. Combining CORUM with other resources, we assembled a dataset of over 2700 mammalian complexes. ...

    Authors: Philip Wong, Sonja Althammer, Andrea Hildebrand, Andreas Kirschner, Philipp Pagel, Bernd Geissler, Pawel Smialowski, Florian Blöchl, Matthias Oesterheld, Thorsten Schmidt, Normann Strack, Fabian J Theis, Andreas Ruepp and Dmitrij Frishman
    Citation: BMC Genomics 2008 9:629
    Content type: Research article Published on:

  16. Understanding how mesenchymal cells arise from epithelial cells could have a strong impact in unveiling mechanisms of epithelial cell plasticity underlying kidney regeneration and repair.

    Authors: Stefano Campanaro, Simone Picelli, Rossella Torregrossa, Laura Colluto, Monica Ceol, Dorella Del Prete, Angela D'Angelo, Giorgio Valle and Franca Anglani
    Citation: BMC Genomics 2007 8:383
    Content type: Research article Published on:

  17. The bacterium Staphylococcus aureus causes significant morbidity and mortality in humans, primarily due to the emergence of strains that are resistant to antibiotics – notably methicillin-resistant S. aureus (MRS...

    Authors: Christina J Brandner, Richard H Maier, Daryl S Henderson, Helmut Hintner, Johann W Bauer and Kamil Önder
    Citation: BMC Genomics 2008 9:321
    Content type: Research article Published on:

  18. A combined supplement of vitamins B9 and B12 was reported to increase milk and milk component yields of dairy cows without effect on feed intake. The present study was undertaken to verify whether this supplem...

    Authors: Bazoumana Ouattara, Nathalie Bissonnette, Melissa Duplessis and Christiane L. Girard
    Citation: BMC Genomics 2016 17:640
    Content type: Research article Published on:

  19. Large-scale gene expression analysis of post-mortem brain tissue offers unique opportunities for investigating genetic mechanisms of psychiatric and neurodegenerative disorders. On the other hand microarray da...

    Authors: Tatiana Popova, Detlev Mennerich, Andreas Weith and Karsten Quast
    Citation: BMC Genomics 2008 9:91
    Content type: Research article Published on:

  20. Trypanosoma brucei is the causative agent of human African sleeping sickness and Nagana in cattle. In addition to being an important pathogen T. brucei has developed into a model system in cell biology.

    Authors: Kapila Gunasekera, Daniel Wüthrich, Sophie Braga-Lagache, Manfred Heller and Torsten Ochsenreiter
    Citation: BMC Genomics 2012 13:556
    Content type: Research article Published on:

  21. Although genes play a key role in many complex diseases, the specific genes involved in most complex diseases remain largely unidentified. Their discovery will hinge on the identification of key sequence varia...

    Authors: Jacob L McCauley, Shannon J Kenealy, Elliott H Margulies, Nathalie Schnetz-Boutaud, Simon G Gregory, Stephen L Hauser, Jorge R Oksenberg, Margaret A Pericak-Vance, Jonathan L Haines and Douglas P Mortlock
    Citation: BMC Genomics 2007 8:266
    Content type: Methodology article Published on:

  22. Glycolipid transfer protein is the prototypical and founding member of the new GLTP superfamily distinguished by a novel conformational fold and glycolipid binding motif. The present investigation provides the...

    Authors: Xianqiong Zou, Taeowan Chung, Xin Lin, Margarita L Malakhova, Helen M Pike and Rhoderick E Brown
    Citation: BMC Genomics 2008 9:72
    Content type: Research article Published on:

  24. The hair coat is available for the yak to live in the harsh environment of the plateau. Besides, improving the hair production of yak is necessary for its textile industry development. Hair grows from hair fol...

    Authors: Xuelan Zhou, Pengjia Bao, Xiaolan Zhang, Xian Guo, Chunnian Liang, Min Chu, Xiaoyun Wu and Ping Yan
    Citation: BMC Genomics 2022 23:737
    Content type: Research Published on:

  25. Ectophytic fungi occupy the waxy plant surface, an extreme environment characterized by prolonged desiccation, nutrient limitation, and exposure to solar radiation. The nature of mechanisms that facilitate ada...

    Authors: Bo Wang, Xiaofei Liang, Mark L. Gleason, Rong Zhang and Guangyu Sun
    Citation: BMC Genomics 2017 18:729
    Content type: Research article Published on:

  26. As economically relevant traits, feeding behavior and food preference domestication determine production cost and profitability. Although there are intensive research efforts on feeding behavior and food intak...

    Authors: Shan He, Xu-Fang Liang, Jian Sun, Ling Li, Ying Yu, Wei Huang, Chun-Mei Qu, Liang Cao, Xiao-Li Bai and Ya-Xiong Tao
    Citation: BMC Genomics 2013 14:601
    Content type: Research article Published on:

  27. Parasitoid wasps have fascinating life cycles and play an important role in trophic networks, yet little is known about their genome content and function. Parasitoids that infect aphids are an important group ...

    Authors: Alice B. Dennis, Gabriel I. Ballesteros, Stéphanie Robin, Lukas Schrader, Jens Bast, Jan Berghöfer, Leo W. Beukeboom, Maya Belghazi, Anthony Bretaudeau, Jan Buellesbach, Elizabeth Cash, Dominique Colinet, Zoé Dumas, Mohammed Errbii, Patrizia Falabella, Jean-Luc Gatti…
    Citation: BMC Genomics 2020 21:376
    Content type: Research article Published on:

  28. Next-generation sequencing (NGS) offers great opportunities for studying the biology of insect vectors of disease. Prerequisites for successful analyses include high quality annotated genome assemblies and tha...

    Authors: Gareth D. Weedall, Helen Irving, Margaret A. Hughes and Charles S. Wondji
    Citation: BMC Genomics 2015 16:931
    Content type: Research article Published on:

  29. Acute or chronic irreversible respiratory failure may occur in patients undergoing pneumonectomy. Aim of this study was to determine transcriptome expression changes after experimental pneumonectomy in swine m...

    Authors: Valerio Napolioni, Fortunato Bianconi, Rossella Potenza, Francesco M. Carpi, Vienna Ludovini, Matteo Picciolini, Francesca R. Tofanetti, Antonello Bufalari, Stefano Pallotti, Camilla Poggi, Marco Anile, Niccolò Daddi, Federico Venuta, Francesco Puma and Jacopo Vannucci
    Citation: BMC Genomics 2021 22:881
    Content type: Research Published on:

  30. In diphyodont mammals, the additional molars (permanent molars) bud off from the posterior-free end of the primary dental lamina compared with successional teeth (replacement teeth) budding off from the second...

    Authors: Fu Wang, Yang Li, Xiaoshan Wu, Min Yang, Wei Cong, Zhipeng Fan, Jinsong Wang, Chunmei Zhang, Jie Du and Songlin Wang
    Citation: BMC Genomics 2017 18:148
    Content type: Research article Published on:

  31. The moss Physcomitrella patens as a model species provides an important reference for early-diverging lineages of plants and the release of the genome in 2008 opened the doors to genome-wide studies. The usabilit...

    Authors: Andreas D Zimmer, Daniel Lang, Karol Buchta, Stephane Rombauts, Tomoaki Nishiyama, Mitsuyasu Hasebe, Yves Van de Peer, Stefan A Rensing and Ralf Reski
    Citation: BMC Genomics 2013 14:498
    Content type: Research article Published on:

  32. Trichophyton rubrum is the main etiological agent of skin and nail infections worldwide. Because of its keratinolytic activity and anthropophilic nature, infection models based on the addition of protein substrat...

    Authors: Tamires Aparecida Bitencourt, Claudia Macedo, Matheus Eloy Franco, Marina Campos Rocha, Igor Sawasaki Moreli, Bruna Aline Micheloto Cantelli, Pablo Rodrigo Sanches, Rene Oliveira Beleboni, Iran Malavazi, Geraldo Aleixo Passos, Mozart Marins and Ana Lúcia Fachin
    Citation: BMC Genomics 2019 20:411
    Content type: Research article Published on:

  33. Flowering time has an important effect on regional adaptation and yields for crops. The tyrosine kinase-like (TKL) gene family is widely existed and participates in many biological processes in plants. Further...

    Authors: Peisen S. Su, Jingyu Li, Dongtian Zang, Zhiyu Wang, Yangyang Wu, Shatong Chi, Fanting Sun, Yufei Niu, Xuewen Hua, Jun Yan and Wenyang Ge
    Citation: BMC Genomics 2024 25:474
    Content type: Research Published on:

  34. The xylem-inhabiting bacterium Xylella fastidiosa (Xf) is the causal agent of Pierce's disease (PD) in vineyards and citrus variegated chlorosis (CVC) in orange trees. Both of these economically-devastating disea...

    Authors: Vivian S da Silva, Cláudio S Shida, Fabiana B Rodrigues, Diógenes CD Ribeiro, Alessandra A de Souza, Helvécio D Coletta-Filho, Marcos A Machado, Luiz R Nunes and Regina Costa de Oliveira
    Citation: BMC Genomics 2007 8:474
    Content type: Research article Published on:

  35. Citrus shoot tips abscise at an anatomically distinct abscission zone (AZ) that separates the top part of the shoots into basal and apical portions (citrus self-pruning). Cell separation occurs only at the AZ,...

    Authors: Jin-Zhi Zhang, Kun Zhao, Xiao-Yan Ai and Chun-Gen Hu
    Citation: BMC Genomics 2014 15:892
    Content type: Research article Published on:

  36. Social insects, such as honey bees, use molecular, physiological and behavioral responses to combat pathogens and parasites. The honey bee genome contains all of the canonical insect immune response pathways, ...

    Authors: Freddie-Jeanne Richard, Holly L Holt and Christina M Grozinger
    Citation: BMC Genomics 2012 13:558
    Content type: Research article Published on:

  37. Genome scale annotation of regulatory interactions and reconstruction of regulatory networks are the crucial problems in bacterial genomics. The Lactobacillales order of bacteria collates various microorganisms h...

    Authors: Dmitry A Ravcheev, Aaron A Best, Natalia V Sernova, Marat D Kazanov, Pavel S Novichkov and Dmitry A Rodionov
    Citation: BMC Genomics 2013 14:94
    Content type: Research article Published on:

  38. Neuronal tissue has limited potential to self-renew or repair after neurological diseases. Cellular therapies using stem cells are promising approaches for the treatment of neurological diseases. However, the ...

    Authors: Tatiana Tondreau, Marielle Dejeneffe, Nathalie Meuleman, Basile Stamatopoulos, Alain Delforge, Philippe Martiat, Dominique Bron and Laurence Lagneaux
    Citation: BMC Genomics 2008 9:166
    Content type: Research article Published on:

  39. The genome sequence of the sea-ice bacterium Psychromonas ingrahamii 37, which grows exponentially at -12C, may reveal features that help to explain how this extreme psychrophile is able to grow at such low tempe...

    Authors: Monica Riley, James T Staley, Antoine Danchin, Ting Zhang Wang, Thomas S Brettin, Loren J Hauser, Miriam L Land and Linda S Thompson
    Citation: BMC Genomics 2008 9:210
    Content type: Research article Published on:

  40. During infection by intracellular pathogens, a highly complex interplay occurs between the infected cell trying to degrade the invader and the pathogen which actively manipulates the host cell to enable surviv...

    Authors: Jonas Kjellin, Maria Pränting, Frauke Bach, Roshan Vaid, Bart Edelbroek, Zhiru Li, Marc P. Hoeppner, Manfred Grabherr, Ralph R. Isberg, Monica Hagedorn and Fredrik Söderbom
    Citation: BMC Genomics 2019 20:961
    Content type: Research article Published on:

  41. The polytene nuclei of the dipteran Chironomus tentans (Ch. tentans) with their Balbiani ring (BR) genes constitute an exceptional model system for studies of the expression of endogenous eukaryotic genes. Here, ...

    Authors: Alexey Kutsenko, Thomas Svensson, Björn Nystedt, Joakim Lundeberg, Petra Björk, Erik Sonnhammer, Stefania Giacomello, Neus Visa and Lars Wieslander
    Citation: BMC Genomics 2014 15:819
    Content type: Research article Published on:

  42. Vibriosis has been implicated in major losses of larvae at shellfish hatcheries. However, the species of Vibrio responsible for disease in aquaculture settings and their associated virulence genes are often varia...

    Authors: Hanna Kehlet-Delgado, Claudia C. Häse and Ryan S. Mueller
    Citation: BMC Genomics 2020 21:599
    Content type: Research article Published on:

  43. Brown adipose tissue (BAT) is specialized to dissipate energy in the form of heat. BAT-mediated heat production in rodents and humans is critical for effective temperature adaptation of newborns to the extraut...

    Authors: Sujoy Ghosh, Chul-Hong Park, Jisu Lee, Nathan Lee, Rui Zhang, Clara Huesing, Dorien Reijnders, Jennifer Sones, Heike Münzberg, Leanne Redman and Ji Suk Chang
    Citation: BMC Genomics 2021 22:500
    Content type: Research article Published on:

  44. Curvularia lunata is an important maize foliar fungal pathogen that distributes widely in maize growing area in China. Genome sequencing of the pathogen will provide important information for globally understandi...

    Authors: Shigang Gao, Yaqian Li, Jinxin Gao, Yujuan Suo, Kehe Fu, Yingying Li and Jie Chen
    Citation: BMC Genomics 2014 15:627
    Content type: Research article Published on:

  45. Mastitis is a very common disease in the dairy industry that producers encounter daily. Transcriptomics, using RNA-Sequencing (RNA - Seq) technology, can be used to study the functional aspect of mastitis resi...

    Authors: V. Asselstine, J. F. Medrano and A. Cánovas
    Citation: BMC Genomics 2022 23:222
    Content type: Research Published on:

  46. Recent studies show that galling Hymenoptera and Diptera are able to synthesize the plant hormone indole-3-acetic acid (auxin) from tryptophan and that plant response to insect-produced auxin is implicated in ...

    Authors: Sebastian Bailey, Diana M. Percy, Charles A. Hefer and Quentin C. B. Cronk
    Citation: BMC Genomics 2015 16:943
    Content type: Research article Published on:

  47. Mitochondrial genomes play important roles in studying genome evolution, phylogenetic analyses, and species identification. Amphipods (Class Malacostraca, Order Amphipoda) are one of the most ecologically dive...

    Authors: Joseph B. Benito, Megan L. Porter and Matthew L. Niemiller
    Citation: BMC Genomics 2024 25:298
    Content type: Research Published on:

  48. SSH has emerged as a widely used technology to identify genes that are differentially regulated between two biological situations. Because it includes a normalisation step, it is used for preference to clone l...

    Authors: LC Bui, RD Léandri, JP Renard and V Duranthon
    Citation: BMC Genomics 2005 6:155
    Content type: Methodology article Published on:

  49. Histone deacetylases (HDACs) play an important role in the regulation of gene expression, which is indispensable in plant growth, development, and responses to environmental stresses. In Arabidopsis and rice, the...

    Authors: Qiaoli Du, Yuanpeng Fang, Junmei Jiang, Meiqing Chen, Xiaodong Fu, Zaifu Yang, Liting Luo, Qijiao Wu, Qian Yang, Lujie Wang, Zhiguang Qu, Xiangyang Li and Xin Xie
    Citation: BMC Genomics 2022 23:28
    Content type: Research Published on:

  50. The MADS-box transcription factors are an ancient family of genes that regulate numerous physiological and biochemical processes in plants and facilitate the development of floral organs. However, the function...

    Authors: Xuanrui Zeng, Hailun Liu, Hongyang Du, Sujing Wang, Wenming Yang, Yingjun Chi, Jiao Wang, Fang Huang and Deyue Yu
    Citation: BMC Genomics 2018 19:51
    Content type: Research article Published on:

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BMC Genomics

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