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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Conifers have very large genomes (13 to 30 Gigabases) that are mostly uncharacterized although extensive cDNA resources have recently become available. This report presents a global overview of transcriptome v...

    Authors: Elie Raherison, Philippe Rigault, Sébastien Caron, Pier-Luc Poulin, Brian Boyle, Jukka-Pekka Verta, Isabelle Giguère, Claude Bomal, Jörg Bohlmann and John MacKay
    Citation: BMC Genomics 2012 13:434
    Content type: Research article Published on:

  2. GDSL esterases/lipases are a newly discovered subclass of lipolytic enzymes that are very important and attractive research subjects because of their multifunctional properties, such as broad substrate specifi...

    Authors: Hanna Chepyshko, Chia-Ping Lai, Li-Ming Huang, Jyung-Hurng Liu and Jei-Fu Shaw
    Citation: BMC Genomics 2012 13:309
    Content type: Research article Published on:

  3. Watercress (Nasturtium officinale R. Br.) is an aquatic herb species that is a rich source of secondary metabolites such as glucosinolates. Among these glucosinolates, watercress contains high amounts of gluconas...

    Authors: Jin Jeon, Sun Ju Bong, Jong Seok Park, Young-Kyu Park, Mariadhas Valan Arasu, Naif Abdullah Al-Dhabi and Sang Un Park
    Citation: BMC Genomics 2017 18:401
    Content type: Research article Published on:

  4. Subcellular trafficking is a hallmark of eukaryotic cells. Because of their pivotal role in the process, a great deal of attention has been paid to the SNARE proteins. Most R-SNAREs, or "longins", however, als...

    Authors: Marco Vedovato, Valeria Rossi, Joel B Dacks and Francesco Filippini
    Citation: BMC Genomics 2009 10:510
    Content type: Research article Published on:

  7. Induced pluripotent stem cells (iPSCs) derived from somatic cells have enormous potential for clinical applications. Notably, it was recently reported that reprogramming from somatic cells to iPSCs can induce ...

    Authors: Yulin Chen, Lin Guo, Jiekai Chen, Xiangjie Zhao, Weichen Zhou, Cheng Zhang, Jiucun Wang, Li Jin, Duanqing Pei and Feng Zhang
    Citation: BMC Genomics 2014 15:79
    Content type: Research article Published on:

  8. Our understanding of the dynamics of genome stability versus gene flux within bacteriophage lineages is limited. Recently, there has been a renewed interest in the use of bacteriophages as 'therapeutic' agents; a...

    Authors: Andrew R Timms, Joanna Cambray-Young, Andrew E Scott, Nicola K Petty, Phillippa L Connerton, Louise Clarke, Kathy Seeger, Mike Quail, Nicola Cummings, Duncan J Maskell, Nicholas R Thomson and Ian F Connerton
    Citation: BMC Genomics 2010 11:214
    Content type: Research article Published on:

  9. Previous research has demonstrated that increased milking frequency of dairy cattle during the first few weeks of lactation enhances milk yield, and that the effect persists throughout the entire lactation per...

    Authors: Erin E Connor, Stephen Siferd, Theodore H Elsasser, Christina M Evock-Clover, Curtis P Van Tassell, Tad S Sonstegard, Violet M Fernandes and Anthony V Capuco
    Citation: BMC Genomics 2008 9:362
    Content type: Research article Published on:

  10. The fishery and aquaculture of the widely distributed mangrove crab Scylla serrata is a steadily growing, high-value, global industry. Climate change poses a risk to this industry as temperature elevations are ex...

    Authors: Anish M.S. Shrestha, Crissa Ann I. Lilagan, Joyce Emlyn B. Guiao, Maria Rowena R. Romana-Eguia and Ma. Carmen Ablan Lagman
    Citation: BMC Genomics 2021 22:580
    Content type: Research article Published on:

  11. A successful development of herbivorous insects into plant tissues depends on coordination of metabolic processes. Plants have evolved complex mechanisms to recognize such attacks, and to trigger a defense res...

    Authors: Danielle C Cardoso, Juliana C Martinati, Poliana F Giachetto, Ramon O Vidal, Marcelo F Carazzolle, Lilian Padilha, Oliveiro Guerreiro-Filho and Mirian P Maluf
    Citation: BMC Genomics 2014 15:66
    Content type: Research article Published on:

  12. Pseudomonas aeruginosa ATCC 27853 was isolated from a hospital blood specimen in 1971 and has been widely used as a model strain to survey antibiotics susceptibilities, biofilm develop...

    Authors: Huiluo Cao, Yong Lai, Salim Bougouffa, Zeling Xu and Aixin Yan
    Citation: BMC Genomics 2017 18:459
    Content type: Research article Published on:

  13. Microalgae in the genus Nannochloropsis are photosynthetic marine Eustigmatophytes of significant interest to the bioenergy and aquaculture sectors due to their ability to efficiently accumulate biomass and lipid...

    Authors: Shawn R Starkenburg, Kyungyoon J Kwon, Ramesh K Jha, Cedar McKay, Michael Jacobs, Olga Chertkov, Scott Twary, Gabrielle Rocap and Rose Ann Cattolico
    Citation: BMC Genomics 2014 15:212
    Content type: Research article Published on:

  14. Pentatricopeptide-repeat proteins (PPRs) are characterized by tandem arrays of a degenerate 35-amino-acid (PPR motifs), which can bind RNA strands and participate in post-transcription. PPR proteins family is ...

    Authors: Guanglong Chen, Yu Zou, Jihong Hu and Yi Ding
    Citation: BMC Genomics 2018 19:720
    Content type: Research article Published on:

  15. The jumonji C (JmjC) domain containing gene 6 (Jmjd6, previously known as phosphatidylserine receptor) has misleadingly been annotated to encode a transmembrane receptor for the engulfment of apoptotic cells. Giv...

    Authors: Phillip Hahn, Jens Böse, Stefanie Edler and Andreas Lengeling
    Citation: BMC Genomics 2008 9:293
    Content type: Research article Published on:

  16. Potato virus Y (PVY) is a major pathogen of potatoes with major impact on global agricultural production. Resistance to PVY can be achieved by engineering potatoes to express a recessive, resistant allele of e...

    Authors: Pablo A. Gutierrez Sanchez, Lavanya Babujee, Helena Jaramillo Mesa, Erica Arcibal, Megan Gannon, Dennis Halterman, Molly Jahn, Jiming Jiang and Aurélie M. Rakotondrafara
    Citation: BMC Genomics 2020 21:18
    Content type: Research article Published on:

  17. In fish, minimally invasive blood sampling is widely used to monitor physiological stress with blood plasma biomarkers. As fish blood cells are nucleated, they might be a source a potential new markers derived...

    Authors: Madoka Vera Krick, Erick Desmarais, Athanasios Samaras, Elise Guéret, Arkadios Dimitroglou, Michalis Pavlidis, Costas Tsigenopoulos and Bruno Guinand
    Citation: BMC Genomics 2021 22:111
    Content type: Research article Published on:

  18. There are two genetically distinct subspecies of cattle, Bos taurus taurus and Bos taurus indicus, which arose from independent domestication events. The two types of cattle show substantial phenotypic difference...

    Authors: Ruijie Liu, Rick Tearle, Wai Yee Low, Tong Chen, Dana Thomsen, Timothy P. L. Smith, Stefan Hiendleder and John L. Williams
    Citation: BMC Genomics 2021 22:410
    Content type: Research Published on:

  19. Oysters inhabit in the intertidal zone and may be suffered from environmental stresses, which can increase the production of reactive oxygen species (ROS), resulting in mass mortality. Superoxide dismutases (S...

    Authors: Youli Liu, Zhenmin Bao, Zhihua Lin and Qinggang Xue
    Citation: BMC Genomics 2022 23:378
    Content type: Research Published on:

  20. Recently, pioneering expression quantitative trait loci (eQTL) studies on single cell RNA sequencing (scRNA-seq) data have revealed new and cell-specific regulatory single nucleotide variants (SNVs). Here, we ...

    Authors: Hongyu Liu, N. M. Prashant, Liam F. Spurr, Pavlos Bousounis, Nawaf Alomran, Helen Ibeawuchi, Justin Sein, Piotr Słowiński, Krasimira Tsaneva-Atanasova and Anelia Horvath
    Citation: BMC Genomics 2021 22:40
    Content type: Methodology article Published on:

  21. Penicillium digitatum is a fungal necrotroph causing a common citrus postharvest disease known as green mold. In order to gain insight into the genetic bases of its virulence mechanisms and its high degree of hos...

    Authors: Marina Marcet-Houben, Ana-Rosa Ballester, Beatriz de la Fuente, Eleonora Harries, Jose F Marcos, Luis González-Candelas and Toni Gabaldón
    Citation: BMC Genomics 2012 13:646
    Content type: Research article Published on:

  22. Corynebacterium aurimucosum is a slightly yellowish, non-lipophilic, facultative anaerobic member of the genus Corynebacterium and predominantly isolated from human clinical specimens. Unusual black-pigmented var...

    Authors: Eva Trost, Susanne Götker, Jessica Schneider, Susanne Schneiker-Bekel, Rafael Szczepanowski, Alexandra Tilker, Prisca Viehoever, Walter Arnold, Thomas Bekel, Jochen Blom, Karl-Heinz Gartemann, Burkhard Linke, Alexander Goesmann, Alfred Pühler, Sanjay K Shukla and Andreas Tauch
    Citation: BMC Genomics 2010 11:91
    Content type: Research article Published on:

  23. The genomes of Streptomyces coelicolor and Streptomyces lividans bear a considerable degree of synteny. While S. coelicolor is the model streptomycete for studying antibiotic synthesis and differentiation, S. liv...

    Authors: Karthik P Jayapal, Wei Lian, Frank Glod, David H Sherman and Wei-Shou Hu
    Citation: BMC Genomics 2007 8:229
    Content type: Research article Published on:

  24. Vibrio spp. is the major infection-producing marine bacteria in commercially important bivalve Paphia undulata. The host resistance is the major determining factor for the development of pathogenesis. To explore ...

    Authors: Mingjia Yu, Lin Zheng, Xiaobo Wang, Minfu Wu, Ming Qi, Wandong Fu and Yang Zhang
    Citation: BMC Genomics 2019 20:988
    Content type: Research article Published on:

  25. Phytophthora nicotianae Breda de Haan (Phytophthora parasitica Dastur) causes severe damage to citrus crops worldwide. A population of citrandarins was created from the cross between the susceptible parent Citrus...

    Authors: Rômulo P. M. Lima, Maiara Curtolo, Marcus V. Merfa, Mariângela Cristofani-Yaly and Marcos A. Machado
    Citation: BMC Genomics 2018 19:516
    Content type: Research article Published on:

  26. Eggshell formation takes place in the shell gland of the oviduct of laying hens. The eggshell is rich in calcium and various glycoproteins synthesised in the shell gland. Although studies have identified genes...

    Authors: Samiullah Khan, Shu-Biao Wu and Juliet Roberts
    Citation: BMC Genomics 2019 20:89
    Content type: Research article Published on:

  27. Plant microRNAs (miRNAs) are involved in post-transcriptional regulatory mechanisms of several processes, including the response to biotic and abiotic stress, often contributing to the adaptive response of the...

    Authors: Domenico De Paola, Federica Cattonaro, Domenico Pignone and Gabriella Sonnante
    Citation: BMC Genomics 2012 13:41
    Content type: Research article Published on:

  28. Ensifer alkalisoli YIC4027, a recently characterized nitrogen-fixing bacterium of the genus Ensifer, has been isolated from root nodules of the host plant Sesbania cannabina. This plant is widely used as green ma...

    Authors: Xiaoxiao Dang, Zhihong Xie, Wei Liu, Yu Sun, Xiaolin Liu, Yongqiang Zhu and Christian Staehelin
    Citation: BMC Genomics 2019 20:643
    Content type: Research article Published on:

  29. Human Malaria is transmitted by mosquitoes of the genus Anopheles. Transmission is a complex phenomenon involving biological and environmental factors of humans, parasites and mosquitoes. Among more than 500 anop...

    Authors: Jesús Martínez-Barnetche, Rosa E Gómez-Barreto, Marbella Ovilla-Muñoz, Juan Téllez-Sosa, David E García López, Rhoel R Dinglasan, Ceereena Ubaida Mohien, Robert M MacCallum, Seth N Redmond, John G Gibbons, Antonis Rokas, Carlos A Machado, Febe E Cazares-Raga, Lilia González-Cerón, Salvador Hernández-Martínez and Mario H Rodríguez López
    Citation: BMC Genomics 2012 13:207
    Content type: Research article Published on:

  30. Alternative splicing (AS) plays important roles in gene expression and proteome diversity. Single nucleotide polymorphism (SNP) and insertion/deletion (InDel) are abundant polymorphisms and co-dominant inherit...

    Authors: Xiaobo Luo, Liang Xu, Dongyi Liang, Yan Wang, Wei Zhang, Xianwen Zhu, Yuelin Zhu, Haiyan Jiang, Mingjia Tang and Liwang Liu
    Citation: BMC Genomics 2017 18:505
    Content type: Research article Published on:

  31. Natural rubber, an indispensable commodity used in approximately 40,000 products, is fundamental to the tire industry. The rubber tree species Hevea brasiliensis (Willd. ex Adr. de Juss.) Muell-Arg., which is nat...

    Authors: Camila Campos Mantello, Lucas Boatwright, Carla Cristina da Silva, Erivaldo Jose Scaloppi Jr, Paulo de Souza Goncalves, W. Brad Barbazuk and Anete Pereira de Souza
    Citation: BMC Genomics 2019 20:455
    Content type: Research article Published on:

  32. The human chromosome 14 microRNA cluster (C14MC) is a conserved microRNA (miRNA) cluster across eutherian mammals, reported to play an important role in placental development. However, the expression kinetics ...

    Authors: Pouya Dini, Peter Daels, Shavahn C. Loux, Alejandro Esteller-Vico, Mariano Carossino, Kirsten E. Scoggin and Barry A. Ball
    Citation: BMC Genomics 2018 19:954
    Content type: Research article Published on:

  33. Species of the genus Vibrio, one of the most diverse bacteria genera, have undergone niche adaptation followed by clonal expansion. Niche adaptation and ultimately the formation of ecotypes and speciation in this...

    Authors: Cynthia Maria Chibani, Olivia Roth, Heiko Liesegang and Carolin Charlotte Wendling
    Citation: BMC Genomics 2020 21:354
    Content type: Research article Published on:

  34. Along with the draft sequencing of the pig genome, which has been completed by an international consortium, collection of the nucleotide sequences of genes expressed in various tissues and determination of ent...

    Authors: Hirohide Uenishi, Takeya Morozumi, Daisuke Toki, Tomoko Eguchi-Ogawa, Lauretta A Rund and Lawrence B Schook
    Citation: BMC Genomics 2012 13:581
    Content type: Research article Published on:

  35. Members of the genus Bacillus are important plant growth-promoting rhizobacteria that serve as biocontrol agents. Bacillus paralicheniformis MDJK30 is a PGPR isolated from the peony rhizosphere and can suppress p...

    Authors: Yuhui Du, Jinjin Ma, Zhiqiu Yin, Kai Liu, Gan Yao, Wenfeng Xu, Lingchao Fan, Binghai Du, Yanqin Ding and Chengqiang Wang
    Citation: BMC Genomics 2019 20:283
    Content type: Research article Published on:

  36. Endogenous small interfering (esi)RNAs repress mRNA levels and retrotransposon mobility in Drosophila somatic cells by poorly understood mechanisms. 21 nucleotide esiRNAs are primarily generated from retrotran...

    Authors: Andrew W. Harrington, Michael R. McKain, Daniel Michalski, Kaylyn M. Bauer, Joshua M. Daugherty and Mindy Steiniger
    Citation: BMC Genomics 2017 18:304
    Content type: Research article Published on:

  37. The auxin indole-3-acetic acid (IAA) is a vital phytohormone that influences plant growth and development. Our previous work showed that IAA content decreased during flower development in the medicinally impor...

    Authors: Can Si, Danqi Zeng, Jaime A. Teixeira da Silva, Shengxiang Qiu, Jun Duan, Song Bai and Chunmei He
    Citation: BMC Genomics 2023 24:199
    Content type: Research Published on:

  38. MicroRNAs (miRNAs) regulate gene expression via mRNA cleavage or translation inhibition. In spite of barley being a cereal of great economic importance, very little data is available concerning its miRNA bioge...

    Authors: Katarzyna Kruszka, Andrzej Pacak, Aleksandra Swida-Barteczka, Agnieszka K Stefaniak, Elzbieta Kaja, Izabela Sierocka, Wojciech Karlowski, Artur Jarmolowski and Zofia Szweykowska-Kulinska
    Citation: BMC Genomics 2013 14:34
    Content type: Research article Published on:

  39. Planarians are considered to be among the extant animals close to one of the earliest groups of organisms that acquired a central nervous system (CNS) during evolution. Planarians have a bilobed brain with nin...

    Authors: Osamu Nishimura, Yukako Hirao, Hiroshi Tarui and Kiyokazu Agata
    Citation: BMC Genomics 2012 13:289
    Content type: Research article Published on:

  40. Brucella spp. are Gram-negative, facultative intracellular pathogens that cause brucellosis in both humans and animals. The B. abortus vaccine strain 104 M is the only vaccine availabl...

    Authors: Xiaodong Zai, Qiaoling Yang, Kun Liu, Ruihua Li, Mengying Qian, Taoran Zhao, Yaohui Li, Ying Yin, Dayong Dong, Ling Fu, Shanhu Li, Junjie Xu and Wei Chen
    Citation: BMC Genomics 2017 18:402
    Content type: Research article Published on:

  41. Malignant breast cancer with complex molecular mechanisms of progression and metastasis remains a leading cause of death in women. To improve diagnosis and drug development, it is critical to identify panels o...

    Authors: Ying Cai, Ruben Nogales-Cadenas, Quanwei Zhang, Jhih-Rong Lin, Wen Zhang, Kelly O’Brien, Cristina Montagna and Zhengdong D. Zhang
    Citation: BMC Genomics 2017 18:185
    Content type: Research article Published on:

  42. Segmental duplications (SDs) are not evenly distributed along chromosomes. The reasons for this biased susceptibility to SD insertion are poorly understood. Accumulation of SDs is associated with increased gen...

    Authors: Grit Ebert, Anne Steininger, Robert Weißmann, Vivien Boldt, Allan Lind-Thomsen, Jana Grune, Stefan Badelt, Melanie Heßler, Matthias Peiser, Manuel Hitzler, Lars R Jensen, Ines Müller, Hao Hu, Peter F Arndt, Andreas W Kuss, Katrin Tebel…
    Citation: BMC Genomics 2014 15:537
    Content type: Research article Published on:

  43. Mammalian sex chromosomes provide dosage compensation, but avian lack a global mechanism of dose compensation. Herein, we employed nanopore sequencing to investigate the genetic basis of gene expression and ge...

    Authors: Jianmei Wang, Yang Xi, Shengchao Ma, Jingjing Qi, Junpeng Li, Rongping Zhang, Chunchun Han, Liang Li, Jiwen Wang and Hehe Liu
    Citation: BMC Genomics 2022 23:122
    Content type: Research article Published on:

  44. Spot 42 was discovered in Escherichia coli nearly 40 years ago as an abundant, small and unstable RNA. Its biological role has remained obscure until recently, and is today implicated in having broader roles in t...

    Authors: Geir Ã… Hansen, Rafi Ahmad, Erik Hjerde, Christopher G Fenton, Nils-Peder Willassen and Peik Haugen
    Citation: BMC Genomics 2012 13:37
    Content type: Research article Published on:

  45. Essential genes are critical for the development of all organisms and are associated with many human diseases. These genes have been a difficult category to study prior to the availability of balanced lethal s...

    Authors: Jeffrey Shih-Chieh Chu, Shu-Yi Chua, Kathy Wong, Ann Marie Davison, Robert Johnsen, David L Baillie and Ann M Rose
    Citation: BMC Genomics 2014 15:361
    Content type: Research article Published on:

  46. Changes in promoter DNA methylation pattern of genes involved in key biological pathways have been reported in glioblastoma. Genome-wide assessments of DNA methylation levels are now required to decipher the e...

    Authors: Amandine Etcheverry, Marc Aubry, Marie de Tayrac, Elodie Vauleon, Rachel Boniface, Frederique Guenot, Stephan Saikali, Abderrahmane Hamlat, Laurent Riffaud, Philippe Menei, Veronique Quillien and Jean Mosser
    Citation: BMC Genomics 2010 11:701
    Content type: Research article Published on:

  47. The salmon louse (Lepeophtheirus salmonis) is an obligate ectoparasitic copepod living on Atlantic salmon and other salmonids in the marine environment. Salmon lice cause a number of environmental problems and le...

    Authors: Zhaoran Zhou, Christiane Eichner, Frank Nilsen, Inge Jonassen and Michael Dondrup
    Citation: BMC Genomics 2021 22:832
    Content type: Research Published on:

  48. Estrogen receptor α (ERα) is a transcription factor whose activity is affected by multiple regulatory cofactors. In an effort to identify the human genes involved in the regulation of ERα, we constructed a hig...

    Authors: Xiao Han, Jinhai Guo, Weiwei Deng, Chenying Zhang, Peige Du, Taiping Shi and Dalong Ma
    Citation: BMC Genomics 2008 9:476
    Content type: Research article Published on:

  49. Hygienic behavior is a complex, genetically-based quantitative trait that serves as a key defense mechanism against parasites and diseases in Apis mellifera. Yet, the genomic basis and functional pathways involve...

    Authors: Sébastien Boutin, Mohamed Alburaki, Pierre-Luc Mercier, Pierre Giovenazzo and Nicolas Derome
    Citation: BMC Genomics 2015 16:500
    Content type: Research article Published on:

  50. Interspecific hybridization plays vital roles in enriching animal diversity, while male hybrid sterility (MHS) of the offspring commonly suffered from spermatogenic arrest constitutes the postzygotic reproduct...

    Authors: TserangDonko Mipam, Xuemei Chen, Wangsheng Zhao, Peng Zhang, Zhixin Chai, Binglin Yue, Hui Luo, Jikun Wang, Haibo Wang, Zhijuan Wu, Jiabo Wang, Mingxiu Wang, Hui Wang, Ming Zhang, Hongying Wang, Kemin Jing…
    Citation: BMC Genomics 2023 24:149
    Content type: Research article Published on:

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  • Citation Impact 2023
    Journal Impact Factor: 3.5
    5-year Journal Impact Factor: 4.1
    Source Normalized Impact per Paper (SNIP): 1.083
    SCImago Journal Rank (SJR): 1.047

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BMC Genomics

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