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  1. Tuber starch and steroidal glycoalkaloid (SGA)-related traits have been consistently prioritized in potato breeding, while allelic variation pattern of genes that underlie these traits is less explored.

    Authors: Hongbo Li, Matthijs Brouwer, Elena Del Pup, Natascha van Lieshout, Richard Finkers, Christian W. B. Bachem and Richard G. F. Visser
    Citation: BMC Genomics 2024 25:274
    Content type: Research Published on:

  2. There are two major genetic types of Epstein-Barr Virus (EBV): type 1 (EBV-1) and type 2 (EBV-2). EBV functions by manipulating gene expression in host B cells, using virus-encoded gene regulatory proteins inc...

    Authors: Kenyatta C. M. F. Viel, Sreeja Parameswaran, Omer A. Donmez, Carmy R. Forney, Matthew R. Hass, Cailing Yin, Sydney H. Jones, Hayley K. Prosser, Arame A. Diouf, Olivia E. Gittens, Lee E. Edsall, Xiaoting Chen, Hope Rowden, Katelyn A. Dunn, Rui Guo, Andrew VonHandorf…
    Citation: BMC Genomics 2024 25:273
    Content type: Research Published on:

  4. Mung bean (Vigna radiata (L.) Wilczek), is an important pulse crop in the global south. Early flowering and maturation are advantageous traits for adaptation to northern and southern latitudes. This study investi...

    Authors: Kevin O. Chiteri, Ashlyn Rairdin, Kulbir Sandhu, Sven Redsun, Andrew Farmer, Jamie A. O’Rourke, Steven B. Cannon and Arti Singh
    Citation: BMC Genomics 2024 25:270
    Content type: Research Published on:

  5. Polymorphisms of Plasmodium falciparum chloroquine resistance transporter (pfcrt), Plasmodium falciparum multi-drug resistance 1 (pfmdr1) and Plasmodium falciparum kelch 13-propeller (pfk13) genes are accepted as...

    Authors: Phunuch Muhamad, Papichaya Phompradit, Wanna Chaijaroenkul and Kesara Na-Bangchang
    Citation: BMC Genomics 2024 25:269
    Content type: Research Published on:

  6. The core regulation of the abscisic acid (ABA) signalling pathway comprises the multigenic families PYL, PP2C, and SnRK2. In this work, we conducted a genome-wide study of the components of these families in Cucu...

    Authors: Jessica Iglesias-Moya, Álvaro Benítez, María Segura, Sonsoles Alonso, Dolores Garrido, Cecilia Martínez and Manuel Jamilena
    Citation: BMC Genomics 2024 25:268
    Content type: Research Published on:

  7. In every omics experiment, genes or their products are identified for which even state of the art tools are unable to assign a function. In the biotechnology chassis organism Pseudomonas putida, these proteins of...

    Authors: Steven Tavis and Robert L. Hettich
    Citation: BMC Genomics 2024 25:267
    Content type: Research Published on:

  9. Over the last decades, it was subject of many studies to investigate the genomic connection of milk production and health traits in dairy cattle. Thereby, incorporating functional information in genomic analys...

    Authors: Helen Schneider, Ana-Marija Krizanac, Clemens Falker-Gieske, Johannes Heise, Jens Tetens, Georg Thaller and Jörn Bennewitz
    Citation: BMC Genomics 2024 25:265
    Content type: Research Published on:

  11. Escherichia coli, a ubiquitous inhabitant of the gut microbiota, has been recognized as an indicator of fecal contamination and a potential reservoir for antibiotic resistance genes. Its prevalence in drinking wa...

    Authors: Oluwaseyi Samuel Olanrewaju, Lesego G Molale-Tom, Rinaldo K Kritzinger and Cornelius Carlos Bezuidenhout
    Citation: BMC Genomics 2024 25:263
    Content type: Research Published on:

  12. Plague, as an ancient zoonotic disease caused by Yersinia pestis, has brought great disasters. The natural plague focus of Marmota himalayana in the Qinghai-Tibet Plateau is the largest, which has been constantly...

    Authors: Ying Ma, Pengbo Liu, Ziyan Li, Yujuan Yue, Yanmei Zhao, Jian He, Jiaxin Zhao, Xiuping Song, Jun Wang, Qiyong Liu and Liang Lu
    Citation: BMC Genomics 2024 25:262
    Content type: Research Published on:

  14. In this study, we conducted an assembly and analysis of the organelle genomes of Aconitum carmichaelii. Our investigation encompassed the examination of organelle genome structures, gene transfer events, and the ...

    Authors: Rongxiang Zhang, Niyan Xiang, Changjiang Qian, Shuwen Liu, Yuemei Zhao, Guiyu Zhang, Pei Wei, Jianfeng Li and Tao Yuan
    Citation: BMC Genomics 2024 25:260
    Content type: Research Published on:

  15. Sugar Will Eventually be Exported Transporter (SWEET) proteins are highly conserved in various organisms and play crucial roles in sugar transport processes. However, SWEET proteins in peanuts, an essential le...

    Authors: Yang Li, Mengjia Fu, Jiaming Li, Jie Wu, Zhenyang Shua, Tiantian Chen, Wen Yao and Dongxin Huai
    Citation: BMC Genomics 2024 25:259
    Content type: Research Published on:

  16. The interactions between the rumen microbiota and the host are crucial for the digestive and absorptive processes of ruminants, and they are heavily influenced by the climatic conditions of their habitat. Owin...

    Authors: Cheng Pan, Haiyan Li, Shehr Bano Mustafa, Cuomu Renqing, Zhenzhen Zhang, Jingjing Li, Tianzeng Song, Gaofu Wang and Wangsheng Zhao
    Citation: BMC Genomics 2024 25:258
    Content type: Research Published on:

  18. Congenital heart defects (CHD) are structural defects of the heart affecting approximately 1% of newborns. They exhibit low penetrance and non-Mendelian patterns of inheritance as varied and complex traits. Wh...

    Authors: Martin Broberg, Minna Ampuja, Samuel Jones, Tiina Ojala, Otto Rahkonen, Riikka Kivelä, James Priest, Aarno Palotie, Hanna M. Ollila and Emmi Helle
    Citation: BMC Genomics 2024 25:256
    Content type: Research Published on:

  19. Drug addiction is a serious problem worldwide and is influenced by genetic factors. The present study aimed to investigate the association between genetics and drug addiction among Han Chinese.

    Authors: Hanli Xu, Yulin Kang, Tingming Liang, Sifen Lu, Xiaolin Xia, Zuhong Lu, Lingming Hu, Li Guo, Lishu Zhang, Jiaqiang Huang, Lin Ye, Peiye Jiang, Yi Liu, Li Xinyi, Jin Zhai, Zi Wang…
    Citation: BMC Genomics 2024 25:255
    Content type: Research Published on:

  20. Neddylation, an important post-translational modification (PTM) of proteins, plays a crucial role in follicular development. MLN4924 is a small-molecule inhibitor of the neddylation-activating enzyme (NAE) tha...

    Authors: Mengjuan Chen, Yuqing Liu, Mingzhong Zuo, Meina Zhang, Zhitong Wang, Xin Li, Dongdong Yuan, Huifen Xu, Guangqing Yu and Ming Li
    Citation: BMC Genomics 2024 25:254
    Content type: Research Published on:

  21. The genus Pseudoroegneria (Nevski) Löve (Triticeae, Poaceae), whose genome symbol was designed as “St”, accounts for more than 60% of perennial Triticeae species. The diploid species Psudoroegneria libanotica ...

    Authors: Xingguang Zhai, Dandan Wu, Chen Chen, Xunzhe Yang, Shaobo Cheng, Lina Sha, Shuhan Deng, Yiran Cheng, Xing Fan, Houyang Kang, Yi Wang, Dengcai Liu, Yonghong Zhou and Haiqin Zhang
    Citation: BMC Genomics 2024 25:253
    Content type: Research Published on:

  22. The SnRK (sucrose non-fermentation-related protein kinase) plays an important role in regulating various signals in plants. However, as an important bamboo shoot and wood species, the response mechanism of PheSnR...

    Authors: Huifang Zheng, Yali Xie, Changhong Mu, Wenlong Cheng, Yucong Bai and Jian Gao
    Citation: BMC Genomics 2024 25:252
    Content type: Research Published on:

  23. The Illumina family of Infinium Methylation BeadChip microarrays has been widely used over the last 15 years for genome-wide DNA methylation profiling, including large-scale and population-based studies, due t...

    Authors: Timothy J. Peters, Braydon Meyer, Lauren Ryan, Joanna Achinger-Kawecka, Jenny Song, Elyssa M. Campbell, Wenjia Qu, Shalima Nair, Phuc Loi-Luu, Phillip Stricker, Elgene Lim, Clare Stirzaker, Susan J. Clark and Ruth Pidsley
    Citation: BMC Genomics 2024 25:251
    Content type: Research Published on:

  24. Immunotherapy is a practical therapeutic approach in breast cancer (BRCA), and the role of FLI1 in immune regulation has gradually been unveiled. However, the specific role of FLI1 in BRCA was conflicted; thus...

    Authors: Jianying Pei, Ying Peng, Kexin Ma, Chunyan Lan, Tingting Zhang, Yan Li, Xiaofang Chen and Huafang Gao
    Citation: BMC Genomics 2024 25:250
    Content type: Research Published on:

  25. Iron plays a crucial role in the growth of Mycobacterium tuberculosis (M. tuberculosis). However, the precise regulatory mechanism governing this system requires further elucidation. Additionally, limited studies...

    Authors: Yameng Li, Yifan Li, Yao Liu, Xianglong Kong, Ningning Tao, Yawei Hou, Tingting Wang, Qilin Han, Yuzhen Zhang, Fei Long and Huaichen Li
    Citation: BMC Genomics 2024 25:249
    Content type: Research Published on:

  26. Quality traits are essential determinants of consumer preferences. Dioscorea alata (Greater Yam), is a starchy tuber crop in tropical regions. However, a comprehensive understanding of the genetic basis underlyin...

    Authors: Ana Paula Zotta Mota, Komivi Dossa, Mathieu Lechaudel, Denis Cornet, Pierre Mournet, Sylvain Santoni, David Lopez and Hana Chaïr
    Citation: BMC Genomics 2024 25:248
    Content type: Research Published on:

  27. Ampelopsideae J. Wen & Z.L. Nie is a small-sized tribe of Vitaceae Juss., including ca. 47 species from four genera showing a disjunct distribution worldwide across all the continents except Antarctica. There ...

    Authors: Lei Zhang, Ying Meng, Da Wang, Guan-Hao He, Jun-Ming Zhang, Jun Wen and Ze-Long Nie
    Citation: BMC Genomics 2024 25:247
    Content type: Research Published on:

  28. Cyclospora cayetanensis is a protozoan parasite that causes intestinal illness in humans worldwide. Despite its global distribution, most genomic data for C. cayetanensis has been obtained from isolates collected...

    Authors: Monica Santin, Aleksey Molokin, Guadalupe E. Orozco-Mosqueda, Sonia Almeria and Jenny Maloney
    Citation: BMC Genomics 2024 25:246
    Content type: Research Published on:

  29. We investigated whole blood and hepatic mRNA expressions of immune genes and rumen microbiome of crossbred beef steers with divergent residual feed intake phenotype to identify relevant biological processes un...

    Authors: Godstime Taiwo, Olanrewaju B. Morenikeji, Modoluwamu Idowu, Taylor Sidney, Ajiboye Adekunle, Andres Pech Cervantes, Sunday Peters and Ibukun M. Ogunade
    Citation: BMC Genomics 2024 25:245
    Content type: Research Published on:

  30. Vitamin A and retinoic acid (RA, a metabolite of vitamin A), are inextricably involved to the development of skeletal muscle in animals. However, the mechanisms regulating skeletal muscle development by vitami...

    Authors: Pengkang Song, Jiamin Zhao, Weipeng Zhang, Xuying Li, Bingzhen Ji and Junxing Zhao
    Citation: BMC Genomics 2024 25:244
    Content type: Research Published on:

  31. Mosaic loss of chromosome Y (LOY) in leukocytes is the most prevalent somatic aneuploidy in aging humans. Men with LOY have increased risks of all-cause mortality and the major causes of death, including many ...

    Authors: Jonas Mattisson, Jonatan Halvardson, Hanna Davies, Bożena Bruhn-Olszewska, Paweł Olszewski, Marcus Danielsson, Josefin Bjurling, Amanda Lindberg, Ammar Zaghlool, Edyta Rychlicka-Buniowska, Jan P. Dumanski and Lars A. Forsberg
    Citation: BMC Genomics 2024 25:243
    Content type: Research Published on:

  33. Authors: Daniel Gaspar, Catarina Ginja, Nuno Carolino, Célia Leão, Helena Monteiro, Lino Tábuas, Sandra Branco, Ludovina Padre, Pedro Caetano, Ricardo Romão, Claudino Matos, António Marcos Ramos, Elisa Bettencourt and Ana Usié
    Citation: BMC Genomics 2024 25:241
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2024 25:100

  34. Lumpy skin disease (LSD) is a transboundary viral disease of cattle and water buffaloes caused by the LSD virus, leading to high morbidity, low mortality, and a significant economic impact. Initially endemic t...

    Authors: Indrawati Sendow, Irene Kasindi Meki, Ni Luh Putu Indi Dharmayanti, Heri Hoerudin, Atik Ratnawati, Tirumala Bharani K. Settypalli, Hatem Ouled Ahmed, Harimurti Nuradji, Muharam Saepulloh, Rahmat Setya Adji, Nuha Fairusya, Faralinda Sari, Katamtama Anindita, Giovanni Cattoli and Charles Euloge Lamien
    Citation: BMC Genomics 2024 25:240
    Content type: Research Published on:

  35. Acute diarrhea, dehydration and death in piglets are all symptoms of transmissible gastroenteritis virus (TGEV), which results in significant financial losses in the pig industry. It is important to understand...

    Authors: Yajing Zhou, Chao Xu, Shanshen Gu, Yeyi Xiao, Shenglong Wu, Haifei Wang and Wenbin Bao
    Citation: BMC Genomics 2024 25:239
    Content type: Research Published on:

  36. The caffeoyl-CoA-O methyltransferase (CCoAOMT) family plays a crucial role in the oxidative methylation of phenolic substances and is involved in various plant processes, including growth, development, and stress...

    Authors: Yiqing Wang, Tao Wang, Siyu Qi, Jiamin Zhao, Jiumei Kong, Zhihui Xue, Weijiang Sun and Wen Zeng
    Citation: BMC Genomics 2024 25:238
    Content type: Research Published on:

  37. Here, we investigated the underlying transcriptional-level evidence behind phytochemical differences between two metabolically extreme genotypes of Thymus daenensis. The genotypes ‘Zagheh-11’ (thymol/carvacrol ty...

    Authors: Hosein Ahmadi, Reza Fatahi, Zabihollah Zamani, Majid Shokrpour, Morteza Sheikh-Assadi and Peter Poczai
    Citation: BMC Genomics 2024 25:237
    Content type: Research Published on:

  38. The pathogenesis of vitiligo remains unclear. The genes encoding vitiligo-related RNA-binding proteins (RBPs) and their underlying pathogenic mechanism have not been determined.

    Authors: Jingzhan Zhang, Fang Xiang, Yuan Ding, Wen Hu, Hongjuan Wang, Xiangyue Zhang, Zixian Lei, Tingting Li, Peng Wang and Xiaojing Kang
    Citation: BMC Genomics 2024 25:236
    Content type: Research Published on:

  39. Orchardgrass (Dactylis glomerata L.), a perennial forage, has the advantages of rich leaves, high yield, and good quality and is one of the most significant forage for grassland animal husbandry and ecological ma...

    Authors: Guangyan Feng, Yongjuan Jiao, Huizhen Ma, Haoyang Bian, Gang Nie, Linkai Huang, Zheni Xie, Qifan Ran, Wenwen Fan, Wei He and Xinquan Zhang
    Citation: BMC Genomics 2024 25:235
    Content type: Research Published on:

  40. Provision of feed is a major determinant of overall profitability in beef production systems, accounting for up to 75% of the variable costs. Thus, improving cattle feed efficiency, by way of determining the u...

    Authors: Kate Keogh, D. A. Kenny, P. A. Alexandre, M. McGee and A. Reverter
    Citation: BMC Genomics 2024 25:234
    Content type: Research Published on:

  41. Patagonian toothfish (Dissostichus eleginoides) is an economically and ecologically important fish species in the family Nototheniidae. Juveniles occupy progressively deeper waters as they mature and grow, and ad...

    Authors: David Ryder, David Stone, Diana Minardi, Ainsley Riley, Justin Avant, Lisa Cross, Marta Soeffker, Deborah Davidson, Andrew Newman, Peter Thomson, Chris Darby and Ronny van Aerle
    Citation: BMC Genomics 2024 25:233
    Content type: Research Published on:

  42. The rose is one of the most important ornamental flowers in the world for its aesthetic beauty but can be attacked by many pests such as aphids. Aphid infestation causes tremendous damage on plant tissues lead...

    Authors: Wenqi Dong, Lei Sun, Bo Jiao, Pu Zhao, Chunhong Ma, Junping Gao and Shuo Zhou
    Citation: BMC Genomics 2024 25:232
    Content type: Research Published on:

  44. Krüppel-like factor 1 (KLF1), a crucial erythroid transcription factor, plays a significant role in various erythroid changes and haemolytic diseases. The rare erythrocyte Lutheran inhibitor (In(Lu)) blood gro...

    Authors: Luyi Ye, Chen Wang, Aijing Li, Minghao Li, Yan Pi, Jingmin Yang, Ziyan Zhu and Daru Lu
    Citation: BMC Genomics 2024 25:230
    Content type: Research Published on:

  45. Alfalfa (Medicago sativa. L) is one of the best leguminous herbage in China and even in the world, with high nutritional and ecological value. However, one of the drawbacks of alfalfa is its sensitivity to dry co...

    Authors: Qian Ruan, Xiaoming Bai, Yizhen Wang, Xiaofang Zhang, Baoqiang Wang, Ying Zhao, Xiaolin Zhu and Xiaohong Wei
    Citation: BMC Genomics 2024 25:229
    Content type: Research Published on:

  46. Late embryogenesis abundant (LEA) proteins play important roles in plant growth and development, as well as stresses responsiveness. Nowadays, it has been found that LEAs also have function in fruit ripening. ...

    Authors: Yuanxiu Lin, Musha She, Mantong Zhao, Hong Yu, Wenfei Xiao, Yunting Zhang, Mengyao Li, Qing Chen, Yong Zhang, Yan Wang, Wen He, Xiaorong Wang, Haoru Tang and Ya Luo
    Citation: BMC Genomics 2024 25:228
    Content type: Research Published on:

  47. Hybridization capture-based targeted next generation sequencing (NGS) is gaining importance in routine cancer clinical practice. DNA library preparation is a fundamental step to produce high-quality sequencing...

    Authors: HuiJuan Chen, YiRan Zhang, Bing Wang, Rui Liao, XiaoHong Duan, ChunYan Yang, Jing Chen, YanTong Hao, YingShuang Shu, LiLi Cai, Xue Leng, Nian-Song Qian, DaWei Sun, Beifang Niu and Qiming Zhou
    Citation: BMC Genomics 2024 25:227
    Content type: Research Published on:

  48. Long-read sequencing is revolutionizing de-novo genome assemblies, with continued advancements making it more readily available for previously understudied, non-model organisms. Stony corals are one such example,...

    Authors: Benjamin D. Young, Olivia M. Williamson, Nicholas S. Kron, Natalia Andrade Rodriguez, Lys M. Isma, Nicholas J. MacKnight, Erinn M. Muller, Stephanie M. Rosales, Stephanie M. Sirotzke, Nikki Traylor-Knowles, Sara D. Williams and Michael S. Studivan
    Citation: BMC Genomics 2024 25:226
    Content type: Research Published on:

  50. Switchgrass (Panicum virgatum L.) is a warm-season perennial (C4) grass identified as an important biofuel crop in the United States. It is well adapted to the marginal environment where heat and moisture stre...

    Authors: Vasudevan Ayyappan, Venkateswara R. Sripathi, Shaojun Xie, Malay C. Saha, Rita Hayford, Desalegn D. Serba, Mayavan Subramani, Jyothi Thimmapuram, Antonette Todd and Venu Kal Kalavacharla
    Citation: BMC Genomics 2024 25:223
    Content type: Research Published on:

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BMC Genomics

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