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  1. Telomeres are the nucleoprotein complexes that physically cap the ends of eukaryotic chromosomes. Most plants possess Arabidopsis-type telomere sequences (TSs). In addition to terminal TSs, more diverse interstit...

    Authors: Alexander Belyayev, Ruslan Kalendar, Jiřina Josefiová, Ladislava Paštová, Farzaneh Habibi, Václav Mahelka, Bohumil Mandák and Karol Krak
    Citation: BMC Genomics 2023 24:572
  2. Malvaceae is an economically important plant family of 4,225 species in nine subfamilies. Phylogenetic relationships among the nine subfamilies have always been controversial, especially for Brownlowioideae, w...

    Authors: Mingsong Wu, Liu He, Guangyao Ma, Kai Zhang, Haijian Yang and Xinquan Yang
    Citation: BMC Genomics 2023 24:571
  3. Developing genomic resources for a diverse range of species is an important step towards understanding the mechanisms underlying complex traits. Specifically, organisms that exhibit unique and accessible pheno...

    Authors: Samantha K. Smith, Paul W. Frazel, Alireza Khodadadi-Jamayran, Paul Zappile, Christian Marier, Mariam Okhovat, Stuart Brown, Michael A. Long, Adriana Heguy and Steven M. Phelps
    Citation: BMC Genomics 2023 24:569
  4. Mammals are potential hosts for many infectious diseases. However, studies on the viral communities of herbivorous mammals in the Northwest Plateau are limited. Here, we studied the viral communities of herbiv...

    Authors: Jiamin Pan, Likai Ji, Haisheng Wu, Xiaochun Wang, Yan Wang, Yan Wu, Shixing Yang, Quan Shen, Yuwei Liu, Wen Zhang, Keshan Zhang and Tongling Shan
    Citation: BMC Genomics 2023 24:568
  5. Metabolic-dysfunction-associated fatty liver disease (MAFLD) is a comorbidity that generally increases in people living with HIV (PLWH). This condition is usually accompanied by persistent inflammation and pre...

    Authors: Elena Moreno, Javier Martínez-Sanz, Rosa Martín-Mateos, Jorge Díaz-Álvarez, Sergio Serrano-Villar, Diego Burgos-Santamaría, Laura Luna, María Jesús Vivancos, Ana Moreno-Zamora, María Jesús Pérez-Elías, Santiago Moreno, Fernando Dronda, María Luisa Montes and Matilde Sánchez-Conde
    Citation: BMC Genomics 2023 24:567
  6. Olive oil contains monounsaturated oleic acid up to 83% and phenolic compounds, making it an excellent source of fat. Due to its economic importance, the quantity and quality of olive oil should be improved in...

    Authors: AliAkbar Asadi, Vahid Shariati, Soraya Mousavi, Roberto Mariotti and Mehdi Hosseini Mazinani
    Citation: BMC Genomics 2023 24:566
  7. The vaginal microenvironment of healthy women has a predominance of Lactobacillus crispatus, L. iners, L. gasseri, and L. jensenii. The genomic repertoire of the strains of each of the species associated with the...

    Authors: Anupam Bhattacharya, Sushmita Das, Maloyjo Joyraj Bhattacharjee, Ashis K. Mukherjee and Mojibur Rohman Khan
    Citation: BMC Genomics 2023 24:565
  8. While numerous studies have described the transcriptomes of extracellular vesicles (EVs) in different cellular contexts, these efforts have typically relied on sequencing methods requiring RNA fragmentation, w...

    Authors: Juan-Carlos A. Padilla, Seda Barutcu, Ludovic Malet, Gabrielle Deschamps-Francoeur, Virginie Calderon, Eunjeong Kwon and Eric Lécuyer
    Citation: BMC Genomics 2023 24:564
  9. Ovarian development is an important prerequisite and basis for animal reproduction. In many vertebrates, it is regulated by multiple genes and influenced by sex steroid hormones and environmental factors. Howe...

    Authors: Wenjing Wang, Biao Wu, Zhihong Liu, Xiujun Sun, Liqing Zhou, Wandong Xu, Tao Yu, Yanxin Zheng and Shihao Zhang
    Citation: BMC Genomics 2023 24:563
  10. Selective constraint, the depletion of variation due to negative selection, provides insights into the functional impact of variants and disease mechanisms. However, its characterization in mice, the most comm...

    Authors: George Powell, Michelle M. Simon, Sara Pulit, Ann-Marie Mallon and Cecilia M. Lindgren
    Citation: BMC Genomics 2023 24:562
  11. The mitochondria are central in the cellular response to changing environmental conditions resulting from disease states, environmental exposures or normal physiological processes. Although the influences of e...

    Authors: John Lees, Fábio Pèrtille, Pia Løtvedt, Per Jensen and Carlos Guerrero Bosagna
    Citation: BMC Genomics 2023 24:561
  12. Genomic data-based machine learning tools are promising for real-time surveillance activities performing source attribution of foodborne bacteria such as Listeria monocytogenes. Given the heterogeneity of machine...

    Authors: Pierluigi Castelli, Andrea De Ruvo, Andrea Bucciacchio, Nicola D’Alterio, Cesare Cammà, Adriano Di Pasquale and Nicolas Radomski
    Citation: BMC Genomics 2023 24:560
  13. In Alzheimer’s Disease (AD) and other dementias, hippocampal synaptic dysfunction and loss contribute to the progression of memory impairment. Recent analysis of human AD transcriptomes has provided a list of ...

    Authors: Elizabeth B. Wright, Erik G. Larsen, Cecilia M. Coloma-Roessle, Hannah R. Hart and Martha R.C. Bhattacharya
    Citation: BMC Genomics 2023 24:559
  14. Tea plants grown in high-latitude areas are often damaged by extreme freezing temperatures in winter, leading to huge economic losses. Here, the physiological and gene expression characteristics of two tea cul...

    Authors: Jinlei Luo, Shuangjie Huang, Yali Chang, Hui Li and Guiyi Guo
    Citation: BMC Genomics 2023 24:558
  15. Drug-target binding affinity (DTA) prediction is important for the rapid development of drug discovery. Compared to traditional methods, deep learning methods provide a new way for DTA prediction to achieve go...

    Authors: Leiming Xia, Lei Xu, Shourun Pan, Dongjiang Niu, Beiyi Zhang and Zhen Li
    Citation: BMC Genomics 2023 24:557
  16. Cocaine use (CU) is associated with psychiatric and medical diseases. Little is known about the mechanisms of CU-related comorbidities. Findings from preclinical and clinical studies have suggested that CU is ...

    Authors: Youshu Cheng, Amy Justice, Zuoheng Wang, Boyang Li, Dana B. Hancock, Eric O. Johnson and Ke Xu
    Citation: BMC Genomics 2023 24:556
  17. Copy number variation (CNV) is an important source of structural variation in the mammalian genome. CNV assays present a new method to explore the genomic diversity of environmental adaptations in animals and ...

    Authors: Huibin Shi, Taotao Li, Manchun Su, Huihui Wang, Qiao Li, Xia Lang and Youji Ma
    Citation: BMC Genomics 2023 24:555
  18. The Inonotus obliquus mushroom, a wondrous fungus boasting edible and medicinal qualities, has been widely used as a folk medicine and shown to have many potential pharmacological secondary metabolites. The purpo...

    Authors: Jinghua Hao, Xiaoli Wang, Yanhua Shi, Lingjun Li, Jinxin Chu, Junjie Li, Weiping Lin, Tao Yu and Dianhai Hou
    Citation: BMC Genomics 2023 24:554
  19. Black spot disease caused by the necrotrophic fungus Alternaria spp. is one of the most devastating diseases affecting Chrysanthemum morifolium. There is currently no effective way to prevent chrysanthemum black ...

    Authors: Shuhuan Zhang, Weihao Miao, Ye Liu, Jiafu Jiang, Sumei Chen, Fadi Chen and Zhiyong Guan
    Citation: BMC Genomics 2023 24:553
  20. Pleurotus giganteus is a commonly cultivated mushroom with notable high temperature resistance, making it significant for the growth of the edible fungi industry in the tropics. Despite its practical importance,,...

    Authors: Yang Yang, Yongru Pian, Jingyi Li, Lin Xu, Zhu Lu, Yueting Dai and Qinfen Li
    Citation: BMC Genomics 2023 24:552
  21. Producing animal protein while reducing the animal’s impact on the environment, e.g., through improved feed efficiency and lowered methane emissions, has gained interest in recent years. Genetic selection is o...

    Authors: Melanie K. Hess, Hannah E. Hodgkinson, Andrew S. Hess, Larissa Zetouni, Juliana C. C. Budel, Hannah Henry, Alistair Donaldson, Timothy P. Bilton, Tracey C. van Stijn, Michelle R. Kirk, Ken G. Dodds, Rudiger Brauning, Alan F. McCulloch, Sharon M. Hickey, Patricia L. Johnson, Arjan Jonker…
    Citation: BMC Genomics 2023 24:551
  22. Phosphorus is one of the essential nutrients for plant growth. Phosphate-solubilizing microorganisms (PSMs) can alleviate available P deficiency and enhance plant growth in an eco-friendly way. Although ammoni...

    Authors: Zhaomei Lu, Sheng He, Muhammad Kashif, Zufan Zhang, Shuming Mo, Guijiao Su, Linfang Du and Chengjian Jiang
    Citation: BMC Genomics 2023 24:550
  23. E2 ubiquitin conjugating enzymes and E3 ubiquitin ligases play important roles in the growth and development of plants and animals. To date, the systematic analysis of E2 and E3 genes in Rhodophyta is limited....

    Authors: Qiong Wu, Jingru Yin, Min Jiang, Jingyu Zhang and Zhenghong Sui
    Citation: BMC Genomics 2023 24:549
  24. Mycoplasmopsis (M.) bovis, the agent of mastitis, pneumonia, and arthritis in cattle, harbors a small genome of approximately 1 Mbp. Combining data from Illumina and Nanopore technologies, we sequenced and assemb...

    Authors: Sandra Triebel, Konrad Sachse, Michael Weber, Martin Heller, Celia Diezel, Martin Hölzer, Christiane Schnee and Manja Marz
    Citation: BMC Genomics 2023 24:548
  25. Genetic diversity and heterogeneous genomic signatures in marine fish populations may result from selection pressures driven by the strong effects of environmental change. Nearshore fishes are often exposed to...

    Authors: Xiang Zhao, Tianlun Zheng, Tianxiang Gao and Na Song
    Citation: BMC Genomics 2023 24:547
  26. Haemorrhagic septicaemia (HS) is a highly fatal and predominant disease in livestock, particularly cattle and buffalo in the tropical regions of the world. Pasteurella multocida (P. multocida), serotypes B:2 and ...

    Authors: Sadia Mahboob, Nimat Ullah, Muhammad Farhan Ul Haque, Waqar Rauf, Mazhar Iqbal, Amjad Ali and Moazur Rahman
    Citation: BMC Genomics 2023 24:546
  27. Teleost fish have evolved various adaptations that allow them to tolerate cold water conditions. However, the underlying mechanism of this adaptation is poorly understood in Tibetan Plateau fish. RNA-seq combi...

    Authors: Sijia Liu, Fei Tian, Delin Qi, Hongfang Qi, Yang Wang, Shixiao Xu and Kai Zhao
    Citation: BMC Genomics 2023 24:545
  28. Domains of unknown function (DUF) proteins are a number of uncharacterized and highly conserved protein families in eukaryotes. In plants, some DUFs have been predicted to play important roles in development a...

    Authors: Kai Chen, Yilin Wang, Xiaoyan Nong, Yichi Zhang, Tang Tang, Yun Chen, Qikun Shen, Changjie Yan and Bing Lü
    Citation: BMC Genomics 2023 24:544
  29. Macrocystis pyrifera (giant kelp), is a brown macroalga of great ecological importance as a primary producer and structure-forming foundational species that provides habitat for hundreds of species. It has many c...

    Authors: Jose Diesel, Gary Molano, Gabriel J. Montecinos, Kelly DeWeese, Sara Calhoun, Alan Kuo, Anna Lipzen, Asaf Salamov, Igor V. Grigoriev, Daniel C. Reed, Robert J. Miller, Sergey V. Nuzhdin and Filipe Alberto
    Citation: BMC Genomics 2023 24:543
  30. Plasmodium falciparum malaria is a leading cause of pediatric morbidity and mortality in holoendemic transmission areas. Severe malarial anemia [SMA, hemoglobin (Hb) < 5.0 g/dL in children] is the most common cli...

    Authors: Clinton O. Onyango, Qiuying Cheng, Elly O. Munde, Evans Raballah, Samuel B. Anyona, Benjamin H. McMahon, Christophe G. Lambert, Patrick O. Onyango, Kristan A. Schneider, Douglas J. Perkins and Collins Ouma
    Citation: BMC Genomics 2023 24:542
  31. The AP2/ERF transcription factor is widely distributed across the plant kingdom and plays a crucial role in various abiotic stress responses in plants. Tritipyrum, an octoploid resulting from an intergeneric cros...

    Authors: Xiaojuan Liu, Guangyi Zhou, Songshu Chen, Zhenzhen Jia, Suqin Zhang, Mingjian Ren and Fang He
    Citation: BMC Genomics 2023 24:541
  32. Intramuscular fat (IMF) content is the major indicator for evaluating chicken meat quality due to its positive correlation with tenderness, juiciness, and flavor. An increasing number of studies are focusing o...

    Authors: Shuaipeng Zhu, Binbin Zhang, Tingqi Zhu, Dongxue Wang, Cong Liu, Yixuan Liu, Yuehua He, Wenjie Liang, Wenting Li, Ruili Han, Donghua Li, Fengbin Yan, Yadong Tian, Guoxi Li, Xiangtao Kang, Zhuanjian Li…
    Citation: BMC Genomics 2023 24:540
  33. Rhodophyta are among the closest known relatives of green plants. Studying the codons of their genomes can help us understand the codon usage pattern and characteristics of the ancestor of green plants. By stu...

    Authors: Huipeng Yao, Tingting Li, Zheng Ma, Xiyuan Wang, Lixiao Xu, Yuxin Zhang, Yi Cai and Zizhong Tang
    Citation: BMC Genomics 2023 24:538
  34. The mechanism of grain development in elite maize breeding lines has not been fully elucidated. Grain length, grain width and grain weight are key components of maize grain yield. Previously, using the Chinese...

    Authors: Qing Cai, Fuchao Jiao, Qianqian Wang, Enying Zhang, Xiyun Song, Yuhe Pei, Jun Li, Meiai Zhao and Xinmei Guo
    Citation: BMC Genomics 2023 24:537
  35. Paenarthrobacter nicotinovorans ATCC 49919 uses the pyridine-pathway to degrade nicotine and could provide a renewable source of precursors from nicotine-containing waste as well as a model for studying the molec...

    Authors: Amada El-Sabeh, Andreea-Mihaela Mlesnita, Iustin-Tiberius Munteanu, Iasmina Honceriu, Fakhri Kallabi, Razvan-Stefan Boiangiu and Marius Mihasan
    Citation: BMC Genomics 2023 24:536
  36. Biological denitrification has been commonly adopted for the removal of nitrogen from sewage effluents. However, due to the low temperature during winter, microorganisms in the wastewater biological treatment ...

    Authors: Yong-Qiang Hu, Yin-Xin Zeng, Yu Du, Wei Zhao, Hui-Rong Li, Wei Han, Ting Hu and Wei Luo
    Citation: BMC Genomics 2023 24:534
  37. Surgical resection remains a critical treatment option for many patients with primary and secondary hepatic neoplasms. Extended hepatectomy (eHx) may be required for some patients with large tumors, which may ...

    Authors: Zeyuan Li, Bo Peng, Shilian Chen, Jiaping Li, Kai Hu, Lijuan Liao, Qiuli Xie, Mei Yao, Lixing Liang, Stephen Tomlinson, Guandou Yuan and Songqing He
    Citation: BMC Genomics 2023 24:532
  38. Due to the influence of extreme weather, the environment in China’s main cotton-producing areas is prone to drought stress conditions, which affect the growth and development of cotton and lead to a decrease i...

    Authors: Fenglei Sun, Yanlong Yang, Penglong Wang, Jun Ma and Xiongming Du
    Citation: BMC Genomics 2023 24:531
  39. Ligilactobacillus salivarius has been frequently isolated from the gut microbiota of humans and domesticated animals and has been studied as a candidate probiotic. Badger (Meles meles) is known as a “generalist” ...

    Authors: Yu Wang, Xiaomeng Xu, Huan Chen, Fang Yang, Bo Xu, Kun Wang, Qianwen Liu, Guixin Liang, Ruiqi Zhang, Xin’an Jiao and Yunzeng Zhang
    Citation: BMC Genomics 2023 24:530
  40. Environmental changes are expected to intensify in the future. The invasion of toxic plants under environmental changes may change herbivore feeding environments. Herbivores living long-term in toxic plant-fee...

    Authors: Yuchen Tan, Yanli Wang, Qianqian Liu, Zhicheng Wang, Shangli Shi and Junhu Su
    Citation: BMC Genomics 2023 24:529
  41. The harsh conditions of high-altitude environments are known to drive the evolution of physiological and morphological traits in endothermic animals. These conditions are expected to result in the adaptive evo...

    Authors: Edgar G. Gutiérrez, Jorge Ortega, Avery Savoie and J. Antonio Baeza
    Citation: BMC Genomics 2023 24:527
  42. To combat drought stress in rice, a major threat to global food security, three major quantitative trait loci for ‘yield under drought stress’ (qDTYs) were successfully exploited in the last decade. However, t...

    Authors: Deepesh Kumar, M. K. Ramkumar, Bipratip Dutta, Ajay Kumar, Rakesh Pandey, Pradeep Kumar Jain, Kishor Gaikwad, Dwijesh C. Mishra, K. K. Chaturvedi, Anil Rai, Amolkumar U. Solanke and Amitha Mithra Sevanthi
    Citation: BMC Genomics 2023 24:526
  43. The incidence of kidney disease caused by thyroid cancer is rising worldwide. Observational studies cannot recognize whether thyroid cancer is independently associated with kidney disease. We performed the Men...

    Authors: Ziwei Mei, Fuhao Li, Ruizhen Chen, Zilong Xiao, Dongsheng Cai, Lie Jin, Xu Qian, Yucheng Wang and Jun Chen
    Citation: BMC Genomics 2023 24:525
  44. Gut microbiota plays a significant role in host survival, health, and diseases; however, compared to other livestock, research on the gut microbiome of donkeys is limited.

    Authors: Rong Guo, Wei Zhang, Wei Shen, Guoliang Zhang, Taifeng Xie, Ling Li, Jiacuo Jinmei, Yiduan Liu, Fanyong Kong, Baozhu Guo, Benke Li, Yujiang Sun and Shuqin Liu
    Citation: BMC Genomics 2023 24:524
  45. The autosomal dominant form of polycystic kidney disease (ADPKD) is the most common hereditary disease that causes late-onset renal cyst development and end-stage renal disease. Preimplantation genetic testing...

    Authors: Cuiting Peng, Han Chen, Jun Ren, Fan Zhou, Yutong Li, Yuezhi Keqie, Taoli Ding, Jiangxing Ruan, He Wang, Xinlian Chen and Shanling Liu
    Citation: BMC Genomics 2023 24:521

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