Liang P, Pardee AB: Differential display of eukaryotic messenger-RNA by means of the polymerase chain-reaction. Science. 1992, 257: 967-971. 10.1126/science.1354393.
Article
CAS
PubMed
Google Scholar
Breyne P, Dreesen R, Cannoot B, Rombaut D, Vandepoele K, Rombauts S, Vanderhaeghen R, Inze D, Zabeau M: Quantitative cDNA-AFLP analysis for genome-wide expression studies. Mol Genet Genomics. 2003, 269: 173-179.
CAS
PubMed
Google Scholar
Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M: AFLP - A new technique for DNA-fingerprinting. Nucleic Acids Res. 1995, 23: 4407-4414. 10.1093/nar/23.21.4407.
Article
PubMed Central
CAS
PubMed
Google Scholar
Meudt HM, Clarke AC: Almost forgotten or latest practice? AFLP applications, analyses and advances. Trends Plant Sci. 2007, 12: 106-117. 10.1016/j.tplants.2007.02.001.
Article
CAS
PubMed
Google Scholar
Koopman WJM, Gort G: Significance tests and weighted values for AFLP similarities, based on Arabidopsis in silico AFLP fragment length distributions. Genetics. 2004, 167: 1915-1928. 10.1534/genetics.103.015693.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kivioja T, Arvas M, Saloheimo M, Penttila M, Ukkonen E: Optimization of cDNA-AFLP experiments using genomic sequence data. Bioinformatics. 2005, 21: 2573-2579. 10.1093/bioinformatics/bti393.
Article
CAS
PubMed
Google Scholar
Weiberg A, Pöhler D, Morris J, Karlovsky P: Improved coverage of cDNA-AFLP by sequential digestion of immobilized cDNA. BMC Genomics. 2008, 9: 480-10.1186/1471-2164-9-480.
Article
PubMed Central
PubMed
Google Scholar
Gort G, Koopman WJM, Stein A: Fragment length distributions and collision probabilities for AFLP markers. Biometrics. 2006, 62: 1107-1115. 10.1111/j.1541-0420.2006.00613.x.
Article
PubMed
Google Scholar
Gunnarsson GH, Thormar HG, Gudmundsson B, Akesson L, Jonsson JJ: Two-dimensional conformation-dependent electrophoresis (2D-CDE) to separate DNA fragments containing unmatched bulge from complex DNA samples. Nucleic Acids Res. 2004, 32: e23-10.1093/nar/gnh018.
Article
PubMed Central
PubMed
Google Scholar
Subramanian S: Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes. Genetics. 2008, 178: 2429-2432. 10.1534/genetics.107.086405.
Article
PubMed Central
PubMed
Google Scholar
Bachem CWB, Hoeven van der RS, de Bruijn SM, Vreugdenhil D, Zabeau M, Visser RGF: Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development. Plant J. 1996, 9: 745-753. 10.1046/j.1365-313X.1996.9050745.x.
Article
CAS
PubMed
Google Scholar
Xu L, Chen H, Hu XH, Zhang RM, Zhang Z, Luo ZW: Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms. Mol Biol Evol. 2006, 23: 1107-1108. 10.1093/molbev/msk019.
Article
CAS
PubMed
Google Scholar
Vuylsteke M, Daele Van Den H, Vercauteren A, Zabeau M, Kuiper M: Genetic dissection of transcriptional regulation by cDNA-AFLP. Plant J. 2006, 45: 439-446. 10.1111/j.1365-313X.2005.02630.x.
Article
CAS
PubMed
Google Scholar
Reijans M, Lascaris R, Groeneger AO, Wittenberg A, Wesselink E, van Oeveren J, de Wit E, Boorsma A, Voetdijk B, Spek van der H, Grivell LA, Simons G: Quantitative comparison of cDNA-AFLP, microarrays, and GeneChip expression data in Saccharomyces cerevisiae. Genomics. 2003, 82: 606-618. 10.1016/S0888-7543(03)00179-4.
Article
CAS
PubMed
Google Scholar
Ogihara Y, Mochida K, Kawaura K, Murai K, Seki M, Kamiya A, Shinozaki K, Carninci P, Hayashizaki Y, Shin I, Kohara Y, Yamazaki Y: Construction of a full-length cDNA library from young spikelets of hexaploid wheat and its characterization by large-scale sequencing of expressed sequence tags. Genes Genet Syst. 2004, 79: 227-232. 10.1266/ggs.79.227.
Article
PubMed
Google Scholar
Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA: Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol Biol. 2006, 60: 69-85. 10.1007/s11103-005-2564-9.
Article
CAS
PubMed
Google Scholar
Umezawa T, Sakurai T, Totoki Y, Toyoda A, Seki M, Ishiwata A, Akiyama K, Kurotani A, Yoshida T, Mochida K, Kasuga M, Todaka D, Maruyama K, Nakashima K, Enju A, Mizukado S, Ahmed S, Yoshiwara K, Harada K, Tsubokura Y, Hayashi M, Sato S, Anai T, Ishimoto M, Funatsuki H, Teraishi M, Osaki M, Shinano T, Akashi R, Sakaki Y, et al: Sequencing and analysis of approximately 40 000 soybean cDNA clones from a full-length-enriched cDNA library. DNA Res. 2008, 15: 333-346. 10.1093/dnares/dsn024.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sato K, Shin I, Seki M, Shinozaki K, Yoshida T, Takeda K, Conte M, Kohara Y: Development of 5006 full-length cDNAs in barley: a tool for accessing cereal genomics resources. DNA Res. 2009, 16: 81-89. 10.1093/dnares/dsn034.
Article
PubMed Central
PubMed
Google Scholar
Okazaki Y, Furuno M, Kasukawa T, Adachi J, Bono H, Kondo S, Nikaido I, Osato N, Saito R, Suzuki H, Yamanaka I, Kiyosawa H, Yagi K, Tomaru Y, Hasegawa Y, Nogami A, Schonbach C, Gojobori T, Baldarelli R, Hill DP, Bult C, Hume DA, Quackenbush J, Schriml LM, Kanapin A, Matsuda H, Batalov S, Beisel KW, Blake JA, Bradt D, et al: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002, 420: 563-573. 10.1038/nature01266.
Article
PubMed
Google Scholar
Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS: The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC). Genome Res. 2004, 14: 2121-2127. 10.1101/gr.2596504.
Article
PubMed
Google Scholar
Ota T, Suzuki Y, Nishikawa T, Otsuki T, Sugiyama T, Irie R, Wakamatsu A, Hayashi K, Sato H, Nagai K, Kimura K, Makita H, Sekine M, Obayashi M, Nishi T, Shibahara T, Tanaka T, Ishii S, Yamamoto J, Saito K, Kawai Y, Isono Y, Nakamura Y, Nagahari K, Murakami K, Yasuda T, Iwayanagi T, Wagatsuma M, Shiratori A, Sudo H, et al: Complete sequencing and characterization of 21,243 full-length human cDNAs. Nature Genet. 2004, 36: 40-45. 10.1038/ng1285.
Article
PubMed
Google Scholar
Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP: Characterization of 954 bovine full-CDS cDNA sequences. BMC Genomics. 2005, 6: 166-10.1186/1471-2164-6-166.
Article
PubMed Central
PubMed
Google Scholar
Sakate R, Suto Y, Imanishi T, Tanoue T, Hida M, Hayasaka I, Kusuda J, Gojobori T, Hashimoto K, Hirai M: Mapping of chimpanzee full-length cDNAs onto the human genome unveils large potential divergence of the transcriptome. Gene. 2007, 399: 1-10. 10.1016/j.gene.2007.04.013.
Article
CAS
PubMed
Google Scholar
Carter MG, Sharov AA, VanBuren V, Dudekula DB, Carmack CE, Nelson C, Ko MS: Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray. Genome Biol. 2005, 6: R61-10.1186/gb-2005-6-7-r61.
Article
PubMed Central
PubMed
Google Scholar
Stothard P: The sequence manipulation suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques. 2000, 28: 1102-
CAS
PubMed
Google Scholar
Fields Development Team: Fields: Tools for spatial data. 2006, National Center for Atmospheric Research, Boulder, CO, [http://www.image.ucar.edu/GSP/Software/Fields/]
Google Scholar
Edwards LJ, Muller KE, Wolfinger RD, Qaqish BF, Schabenberger O: An R2 statistic for fixed effects in the linear mixed model. Statistics in Medicine. 2008, 27: 6137-6157. 10.1002/sim.3429.
Article
PubMed Central
PubMed
Google Scholar
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA: Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2000, 28: 10-14. 10.1093/nar/28.1.10.
Article
PubMed Central
CAS
PubMed
Google Scholar
Aquea F, Arce-Johnson P: Identification of genes expressed during early somatic embryogenesis in Pinus radiata. Plant Physiol Bioch. 2008, 46: 559-568. 10.1016/j.plaphy.2008.02.012.
Article
CAS
Google Scholar
Muller LA, Craciun AR, Ruytinx J, Lambaerts M, Verbruggen N, Vangronsveld J, Colpaert JV: Gene expression profiling of a Zn-tolerant and a Zn-sensitive Suillus luteus isolate exposed to increased external zinc concentrations. Mycorrhiza. 2007, 17: 571-580. 10.1007/s00572-007-0134-5.
Article
CAS
PubMed
Google Scholar
Pellny TK, Van Aken O, Dutilleul C, Wolff T, Groten K, Bor M, De Paepe R, Reyss A, Van Breusegem F, Noctor G, Foyer CH: Mitochondrial respiratory pathways modulate nitrate sensing and nitrogen-dependent regulation of plant architecture in Nicotiana sylvestris. Plant J. 2008, 54: 976-992. 10.1111/j.1365-313X.2008.03472.x.
Article
PubMed Central
CAS
PubMed
Google Scholar
Polesani M, Desario F, Ferrarini A, Zamboni A, Pezzotti M, Kortekamp A, Polverari A: CDNA-AFLP analysis of plant and pathogen genes expressed in grapevine infected with Plasmopara viticola. BMC Genomics. 2008, 9: 142-10.1186/1471-2164-9-142.
Article
PubMed Central
PubMed
Google Scholar
Huang YC, Chang YL, Hsu JJ, Chuang HW: Transcriptome analysis of auxin-regulated genes of Arabidopsis thaliana. Gene. 2008, 420: 118-124. 10.1016/j.gene.2008.05.017.
Article
CAS
PubMed
Google Scholar
Miao L, Shou S, Zhu Z, Jiang F, Zai W, Yang Y: Isolation of a novel tomato caffeoyl CoA 3-O-methyltransferase gene following infection with the bacterium Ralstonia solanacearum. J Phytopathol. 2008, 156: 588-596. 10.1111/j.1439-0434.2008.01406.x.
Article
CAS
Google Scholar
Hsu TW, Tsai WC, Wang DP, Lin S, Hsiao YY, Chen WH, Chen HH: Differential gene expression analysis by cDNA-AFLP between flower buds of Phalaenopsis Hsiang Fei cv. H. F. and its somaclonal variant. Plant Sci. 2008, 175: 415-422. 10.1016/j.plantsci.2008.06.010.
Article
CAS
Google Scholar
Wee CW, Lee SF, Robin C, Heckel DG: Identification of candidate genes for fenvalerate resistance in Helicoverpa armigera using cDNA-AFLP. Insect Mol Biol. 2008, 17: 351-360. 10.1111/j.1365-2583.2008.00809.x.
Article
CAS
PubMed
Google Scholar
Neveu C, Charvet C, Fauvin A, Cortet J, Castagnone-Sereno P, Cabaret J: Identification of levamisole resistance markers in the parasitic nematode Haemonchus contortus using a cDNA-AFLP approach. Parasitology. 2007, 134: 1105-1110. 10.1017/S0031182007000030.
Article
CAS
PubMed
Google Scholar
Pathan AAK, Devi KU, Vogel H, Reineke A: Analysis of differential gene expression in the generalist entomopatho genic fungus Beauveria bassiana (Bals.) Vuillemin grown on different insect cuticular extracts and synthetic medium through cDNA-AFLPs. Fungal Genet Biol. 2007, 44: 1231-1241. 10.1016/j.fgb.2007.07.002.
Article
CAS
PubMed
Google Scholar