China pharmacopoeia Committee: The Pharmacopoeia of People’s Republic of China(I). 2010, Beijing: Chemical Industry Press
Google Scholar
Hashimoto K, Nakahara S, Inoue T, Sumida Y, Takahashi M: A new chromone from agarwood and pyrolysis products of chromone derivatives. Chem Pharm Bull. 1985, 33 (11): 5088-5091. 10.1248/cpb.33.5088.
Article
CAS
Google Scholar
Ishihara M, Tsuneya T, Uneyama K: Fragrant sesquiterpenes from agarwood. Phytochemistry. 1993, 33: 1147-1155. 10.1016/0031-9422(93)85039-T.
Article
CAS
Google Scholar
Yagura T, Ito M, Kiuchi F, Honda G, Shimada Y: Four new 2-(2-phenylethyl) chromone derivatives from withered wood of Aquilaria sinensis. Chem Pharm Bull(Tokyo). 2003, 51: 560-564. 10.1248/cpb.51.560.
Article
CAS
Google Scholar
Kumeta Y, Ito M: Characterization of δ-guaiene synthases from cultured cells of Aquilaria, responsible for the formation of the sesquiterpenes in agarwood. Plant Physiol. 2010, 154: 1998-2007. 10.1104/pp.110.161828.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chen HQ, Yang Y, Xue J, Wei JH, Zhang Z, Chen HJ: Comparison of compositions and antimicrobial activities of essential oils from chemically stimulated agarwood, wild agarwood and healthy Aquilaria sinensis (Lour.) Gilg trees. Molecules. 2011, 16: 4884-4896. 10.3390/molecules16064884.
Article
CAS
PubMed
Google Scholar
Chen HQ, Wei JH, Yang JS, Zhang Z, Yang Y: Chemical constituents of agarwood originating from the endemic genus Aquilaria plants. Chem Biodivers. 2012, 9 (2): 236-250. 10.1002/cbdv.201100077.
Article
CAS
PubMed
Google Scholar
Gardner RG, Hampton RY: A highly conserved signal controls degradation of 3-hydroxy-3-methylglutaryl-coenzyme A (HMG-CoA) reductase in eukaryotes. J Biol Chem. 1999, 274 (44): 31671-31678. 10.1074/jbc.274.44.31671.
Article
CAS
PubMed
Google Scholar
Shang CH, Zhu F, Li N, OU-Yang X, Shi L, Zhao MW, Li YX: Cloning and characterization of a gene encoding HMG-CoA reductase from Ganoderma lucidum and its functional identification in yeast. Biosci Biotech Bioch. 2008, 72 (5): 1333-1339. 10.1271/bbb.80011.
Article
CAS
Google Scholar
Rohmer M: The discovery of a mevalonate independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants. Nat Prod Rep. 1999, 16: 565-574. 10.1039/a709175c.
Article
CAS
PubMed
Google Scholar
Xu YH, Wang JW, Wang S, Wang JY, Chen XY: Characterization of GaWRKY1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-δ-cadinene synthase-A. Plant Physiol. 2004, 135: 507-515. 10.1104/pp.104.038612.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ma DM, Pu GB, Lei CY, Ma LQ, Wang HH, Guo YW, Chen JL, Du ZG, Wang H, Li GF, Ye HC, Liu BY: Isolation and characterization of AaWRKY1, an Artemisia annua transcription factor that regulates the Amorpha-4,11-diene synthase gene, a key gene of artemisinin biosynthesis. Plant Cell Physiol. 2009, 50 (12): 2146-2161. 10.1093/pcp/pcp149.
Article
CAS
PubMed
Google Scholar
Hong GJ, Xue XY, Mao YB, Wang LJ, Chen XY: Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression. Plant Cell. 2012, 24: 2635-2648. 10.1105/tpc.112.098749.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ng LT, Chang YS, Kadir AA: A review on agar (gaharu) producing Aquilaria species. J Trop Forest Products. 1997, 2 (2): 272-285.
Google Scholar
Itoh T, Tabata Y, Widjaja E, Mulyaningsih T, Parman , Wiriadinata H, Mandang YI: Structure and artificial induction of aloe wood. The Fifth Pacific Regional Wood Anatomy Conference. Abstracts of Papers and Posters. IAWA Journal. 2002, 23 (4): 466-467.
Google Scholar
Pojanagaroon S, Kaewrak C: Mechanical methods to stimulate aloes wood formation in Aquilaria crassna Pierre ex H.Lec. (Kritsana) trees. ISHS Acta Horticuturae. 2005, 676: 161-166.
Article
Google Scholar
Persoon GA: Growing 'the wood of the gods': agarwood production in Southeast Asia. Smallholder Tree Growing for Rural Development and Environmental Service. Advance in Agroforesty. 2008, 5: 245-262. 10.1007/978-1-4020-8261-0_12.
Article
Google Scholar
Zhang Z, Yang Y, Wei JH, Meng H, Sui C, Chen HQ: Advances in studies on mechanism of agarwood formation in Aquilaria sinensis and its hypothesis of agarwood formation induced by defense response. Chinese Traditional and Herbal Drugs. 2010, 41 (1): 156-159.
Google Scholar
Romualdi C, Bortoluzzi S, DAlessi F, Danieli GA: IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments. Physiol Genomics. 2003, 12 (2): 159-162.
Article
CAS
PubMed
Google Scholar
Matsushita Y, Kang WK, Charlwood BV: Cloning and analysis of a cDNA encoding farnesyl diphosphate synthase from Artemisia annua. Gene. 1996, 172: 207-209. 10.1016/0378-1119(96)00054-6.
Article
CAS
PubMed
Google Scholar
Delourme D, Lacroute F, Karst F: Cloning of an Arabidopsis thaliana cDNA coding for farnesyl diphosphate synthase by functional complementation in yeast. Plant Mol Biol. 1994, 26: 1867-1873. 10.1007/BF00019499.
Article
CAS
PubMed
Google Scholar
Cao XY, Yin T, Miao Q, Li HG, Ju XY, Sun Y, Jiang JH: Molecular characterization and expression analysis of a gene encoding for farnesyl diphosphate synthase from Euphorbia pekinensis Rupr. Mol Biol Rep. 2012, 39 (2): 1487-1492. 10.1007/s11033-011-0886-z.
Article
CAS
PubMed
Google Scholar
Kumeta Y, Ito M: Genomic organization of δ-guaiene synthase genes in Aquilaria crassna and its possible use for the identification of Aquilaria species. J Nat Med. 2011, 65 (3): 508-513. 10.1007/s11418-011-0529-7.
Article
CAS
PubMed
Google Scholar
Reymond P, Farmer EE: Jasmonate and salicylate as global signals for defense gene expression. Curr Opin Plant Biol. 1998, 1: 404-411. 10.1016/S1369-5266(98)80264-1.
Article
CAS
PubMed
Google Scholar
Leon J, Rojo E, Sánchez-Serrano JJ: Wound signalling in plants. J Exp Bot. 2001, 52: 1-9. 10.1093/jexbot/52.354.1.
Article
CAS
PubMed
Google Scholar
Zhao J, Davis LC, Verpoorte R: Elicitor signal transduction leading to production of plant secondary metabolites. Biotechnol Adv. 2005, 23: 283-333.
Article
CAS
PubMed
Google Scholar
Ito M, Okimoto K, Yagura T, Honda G: Induction of sesquiterpenoid production by methyl-jasmonate in Aquilaria sinensis cell suspension culture. J Essent Oil Res. 2005, 17 (2): 175-180. 10.1080/10412905.2005.9698867.
Article
Google Scholar
Okudera Y, Ito M: Production of agarwood fragrant constituents in Aquilaria calli and cell suspension cultures. Plant Biotechnol. 2009, 26 (3): 307-315. 10.5511/plantbiotechnology.26.307.
Article
CAS
Google Scholar
Hussain SS, Kayani MA, Amjad M: Transcription factors as tools to engineer enhanced drought stress tolerance in plants. Biotechnol Progr. 2011, 27 (2): 297-306. 10.1002/btpr.514.
Article
CAS
Google Scholar
Riechmann JL, Meyerowitz EM: The AP2/EREBP family of plant transcription factors. Biol Chem. 1998, 379 (6): 633-646.
CAS
PubMed
Google Scholar
Shigyo M, Hasebe M, Ito M: Molecular evolution of the AP2 subfamily. Gene. 2006, 366: 256-265. 10.1016/j.gene.2005.08.009.
Article
CAS
PubMed
Google Scholar
Jakoby M, Weisshaar B, Dröge-Laser W, Vicente-Carbajosa J, Tiedemann J, Kroj T, Parcy F: bZIP transcription factors in Arabidops. Trends Plant Sci. 2002, 7 (3): 106-111. 10.1016/S1360-1385(01)02223-3.
Article
CAS
PubMed
Google Scholar
Chen YH, Yang XY, He K, Liu MH, Li JG, Gao ZF, Lin ZQ, Zhang YF, Wang XX, Qiu XM, Shen YP, Zhang L, Deng XH, Luo JC, Deng XW, Chen ZL, Gu HY, Qu LJ: The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol. 2006, 60: 107-124. 10.1007/s11103-005-2910-y.
Article
CAS
Google Scholar
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L: MYB transcription factors in Arabidopsis. Trends Plant Sci. 2010, 15 (10): 573-581. 10.1016/j.tplants.2010.06.005.
Article
CAS
PubMed
Google Scholar
Feller A, Machemer K, Braun EL, Grotewold E: Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. Plant J. 2011, 66 (1): 94-116. 10.1111/j.1365-313X.2010.04459.x.
Article
CAS
Google Scholar
Pandey SP, Somssich IE: The role of WRKY transcription factors in plant immunity. Plant Physiol. 2009, 150: 1648-1655. 10.1104/pp.109.138990.
Article
PubMed Central
CAS
PubMed
Google Scholar
Rushton PJ, Somssich IE, Ringler P, She QJ: WRKY transcription factors. Trends Plant Sci. 2010, 15 (5): 247-258. 10.1016/j.tplants.2010.02.006.
Article
CAS
PubMed
Google Scholar
Schwechheimer C, Zourelidou M, Bevan MW: Plant transcription factor studies. Annu Rev Plant Physiol Plant Mol Biol. 1998, 49: 127-150. 10.1146/annurev.arplant.49.1.127.
Article
CAS
PubMed
Google Scholar
Singh KB, Foley RC, Oñate-Sánchez L: Transcription factors in plant defense and stress responses. Curr Opin Plant Biol. 2002, 5: 430-436. 10.1016/S1369-5266(02)00289-3.
Article
CAS
PubMed
Google Scholar
Bradley JM, Davies KM, Doles SC, Bloor SJ, Lewis DH: The maize regulatory gene up-regulates the flavonoid biosynthetic pathway of petunia. Plant J. 1998, 13: 381-392. 10.1046/j.1365-313X.1998.00031.x.
Article
CAS
Google Scholar
Grotewold E, Chamberlain M, Snook M, Siame B, Butler L, Swenson J, Maddock S, Claire GS, Bowen B: Engineering secondary metabolism in maize cells by ectopic expression of transcription factors. Plant Cell. 1998, 10: 721-740.
PubMed Central
CAS
PubMed
Google Scholar
Van der Fits L, Memelink J: ORCA3, a jasmonate responsive transcriptional regulator of plant primary and secondary metabolism. Science. 2000, 289: 295-297. 10.1126/science.289.5477.295.
Article
CAS
PubMed
Google Scholar
Jonak C, Ligterink W, Hirt H: MAP kinases in plant signal transduction. Cell Mol Life Sci. 1999, 55: 204-213. 10.1007/s000180050285.
Article
CAS
PubMed
Google Scholar
Pitzschke A, Schikora A, Hirt H: MAPK cascade signalling networks in plant defence. Curr Opin Plant Biol. 2009, 12: 1-6. 10.1016/j.pbi.2008.12.005.
Article
Google Scholar
Teige M, Scheik E, Eulgem T, Doczi R, Ichimura K, Shinozaki K, Dang JL, Hirt H: The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol Cell. 2004, 15: 141-152. 10.1016/j.molcel.2004.06.023.
Article
CAS
PubMed
Google Scholar
Pasquali G, Biricolti S, Locatelli F, Baldoni E, Mattana M: Osmyb4 expression improves adaptive responses to drought and cold stress in transgenic apples. Plant Cell Rep. 2008, 27: 677-1686. 10.1007/s00299-007-0324-9.
Article
Google Scholar
Babior BM: NADPH oxidase. Curr Opin Immunol. 2004, 16: 42-47. 10.1016/j.coi.2003.12.001.
Article
CAS
PubMed
Google Scholar
Mittler R, Vanderauwera S, Gollery M, Breusegem FV: Reactive oxygen gene network of plants. Trends Plant Sci. 2004, 9 (10): 490-498. 10.1016/j.tplants.2004.08.009.
Article
CAS
PubMed
Google Scholar
CITES: Amendments to Appendix I and II of CITES. 2004, Bangkok, Thailand: Proceedings of Thirteenth Meeting of the Conference of the Parties, 2-14.
Google Scholar
Rojo E, Titarenko E, Leon J, Berger S, Vancanneyt G, Sánchez-Serrano JJ: Reversible protein phosphorylation regulates JA-dependent and –independent wound signal transduction pathway in Arabidopsis thaliana. Plant J. 1998, 13: 153-165. 10.1046/j.1365-313X.1998.00020.x.
Article
CAS
PubMed
Google Scholar
Orozco-Cárdenas ML, Ryan CA: Hydrogen peroxide is generated systemically in plant leaves by wounding and systemin via the octadecanoid pathway. Proc Natl Acad Sci USA. 1999, 96: 6553-6557. 10.1073/pnas.96.11.6553.
Article
PubMed Central
PubMed
Google Scholar
Orozco-Cárdenas ML, Narváez-Vásquez J, Ryan CA: Hydrogen peroxide acts as a second messenger for the induction of defense genes in tomato plants in response to wounding, systemin, and methyl jasmonate. Plant Cell. 2001, 13: 179-191.
Article
PubMed Central
PubMed
Google Scholar
Hung KT, Kao CH: Nitric oxide acts as an antioxidant and delays methyl jasmonate -induced senescence of rice leaves. J Plant Physiol. 2004a, 161: 43-52. 10.1078/0176-1617-01178.
Article
CAS
Google Scholar
Hung KT, Hsu YT, Kao CH: Hydrogen peroxide is involved in methyl jasmonate-induced senescence of rice leaves. Physiol Plantarum. 2006, 127: 293-303. 10.1111/j.1399-3054.2006.00662.x.
Article
CAS
Google Scholar
Nakagami H, Pitzschke A, Hirt H: Emerging MAP kinase pathways in plant stress signaling. Trends in Plant Science. 2005, 10 (7): 339-346. 10.1016/j.tplants.2005.05.009.
Article
CAS
PubMed
Google Scholar
Colcombet J, Hirt H: Arabidopsis MAPKs: a complex signalling network involved in multiple biological processes. Biochem J. 2008, 413: 217-226. 10.1042/BJ20080625.
Article
CAS
PubMed
Google Scholar
Kazan K, Manners JM: Jasmonate Signaling: Toward an Integrated View. Plant Physiol. 2008, 146: 1459-1468. 10.1104/pp.107.115717.
Article
PubMed Central
CAS
PubMed
Google Scholar
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J: Genome sequencing in microfabricated high-density picolitre reactors. Nature. 2005, 437: 376-80.
PubMed Central
CAS
PubMed
Google Scholar
Chevreux B, Pfisterer T, Drescher B, Driesel AJ, Müller WEG, Wetter T, Suhai S: Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 2004, 14: 1147-1159. 10.1101/gr.1917404.
Article
PubMed Central
CAS
PubMed
Google Scholar
Trivedi N, Bischof J, Davis S, Pedretti K, Scheetz TE, Braun TA, Roberts CA, Robinson NL, Sheffield VC, Soares MB, Casavant TL: Parallel creation of non-redundant gene indices from partial mRNA transcript. Fut Generation Comput Syst. 2002, 18: 863-870. 10.1016/S0167-739X(02)00059-6.
Article
Google Scholar
Huang X, Madan A: CAP3: a DNA sequence assembly program. Genome Res. 1999, 9: 868-77. 10.1101/gr.9.9.868.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M: From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 2006, 34: D354-D357. 10.1093/nar/gkj102.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zdobnov EM, Apweiler R: InterProScan an integration platform for the signature-recognition methods in InterPro. Bioinformatics. 2001, 17 (9): 847-848. 10.1093/bioinformatics/17.9.847.
Article
CAS
Google Scholar
Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res. 2004, 32: D258-D261. 10.1093/nar/gkh036.
Article
CAS
PubMed
Google Scholar
Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang L: WEGO: a web tool for plotting GO annotations. Acids Research. 2006, 34: 293-297. 10.1093/nar/gkl031.
Article
Google Scholar
Vencio RZ, Brentani H, Pereira CA: Using credibility intervals instead of hypothesis tests in SAGE analysis. Bioinformatics. 2003, 19: 2461-2464. 10.1093/bioinformatics/btg357.
Article
CAS
PubMed
Google Scholar
Perez-Rodriguez P, Riano-Pachon DM, Correa LGG, Rensing SA, Kersten B, Mueller-Roeber B: PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res. 2010, 38: D822-D827. 10.1093/nar/gkp805.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sui C, Zhang J, Wei JH, Chen SH, Li Y, Xu JS, Jin Y, Xie CX, Gao ZH, Chen HJ, Yang CM, Zhang Z, Xu YH: Transcriptome analysis of Bupleurum chinese focusing on genes involved in the biosynthesis of saikosaponins. BMC Genomics. 2011, 12: 539-10.1186/1471-2164-12-539.
Article
PubMed Central
CAS
PubMed
Google Scholar