Thellin O, Zorzi W, Lakaye B, De Borman B, Coumans B, Hennen G, Grisar T, Igout A, Heinen E: Housekeeping genes as internal standards: use and limits. J Biotechnol. 1999, 75: 291-295. 10.1016/S0168-1656(99)00163-7.
Article
CAS
PubMed
Google Scholar
Sturzenbaum SR, Kille P: Control genes in quantitative molecular biological techniques: the variability of invariance. Comp Biochem Physiol B Biochem Mol Biol. 2001, 130: 281-289. 10.1016/S1096-4959(01)00440-7.
Article
CAS
PubMed
Google Scholar
Gorzelniak K, Janke J, Engeli S, Sharma AM: Validation of endogenous controls for gene expression studies in human adipocytes and preadipocytes. Horm Metab Res. 2001, 33: 625-627. 10.1055/s-2001-17911.
Article
CAS
PubMed
Google Scholar
Petersen BH, Rapaport R, Henry DP, Huseman C, Moore WV: Effect of treatment with biosynthetic human growth hormone (GH) on peripheral blood lymphocyte populations and function in growth hormone-deficient children. J Clin Endocrinol Metab. 1990, 70: 1756-1760.
Article
CAS
PubMed
Google Scholar
Tang WW, Qi M, Van GY, Wariner GP, Samal B: Leukemia inhibitory factor ameliorates experimental anti-GBM Ab glomerulonephritis. Kidney Int. 1996, 50: 1922-1927.
Article
CAS
PubMed
Google Scholar
Goldsworthy SM, Goldsworthy TL, Sprankle CS, Butterworth BE: Variation in expression of genes used for normalization of Northern blots after induction of cell proliferation. Cell Prolif. 1993, 26: 511-518.
Article
CAS
PubMed
Google Scholar
Choi JK, Holtzer S, Chacko SA, Lin ZX, Hoffman RK, Holtzer H: Phorbol esters selectively and reversibly inhibit a subset of myofibrillar genes responsible for the ongoing differentiation program of chick skeletal myotubes. Mol Cell Biol. 1991, 11: 4473-4482.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wei Q, Guan Y, Cheng L, Radinsky R, Bar-Eli M, Tsan R, Li L, Legerski RJ: Expression of five selected human mismatch repair genes simultaneously detected in normal and cancer cell lines by a nonradioactive multiplex reverse transcription-polymerase chain reaction. Pathobiology. 1997, 65: 293-300.
Article
CAS
PubMed
Google Scholar
Bjarnason R, Wickelgren R, Hermansson M, Hammarqvist F, Carlsson B, Carlsson LM: Growth hormone treatment prevents the decrease in insulin-like growth factor I gene expression in patients undergoing abdominal surgery. J Clin Endocrinol Metab. 1998, 83: 1566-1572. 10.1210/jc.83.5.1566.
CAS
PubMed
Google Scholar
Jaschke A, Mi H, Tropschug M: Human T cell cyclophilin18 binds to thiol-specific antioxidant protein Aop1 and stimulates its activity. J Mol Biol. 1998, 277: 763-769. 10.1006/jmbi.1998.1644.
Article
CAS
PubMed
Google Scholar
Serels S, Day NS, Wen YP, Giraldi A, Lee SW, Melman A, Christ GJ: Molecular studies of human connexin 43 (Cx43) expression in isolated corporal tissue strips and cultured corporal smooth muscle cells. Int J Impot Res. 1998, 10: 135-143. 10.1038/sj.ijir.3900336.
Article
CAS
PubMed
Google Scholar
Marten NW, Burke EJ, Hayden JM, Straus DS: Effect of amino acid limitation on the expression of 19 genes in rat hepatoma cells. FASEB J. 1994, 8: 538-544.
CAS
PubMed
Google Scholar
Foss DL, Baarsch MJ, Murtaugh MP: Regulation of hypoxanthine phosphoribosyltransferase, glyceraldehyde-3-phosphate dehydrogenase and beta-actin mRNA expression in porcine immune cells and tissues. Anim Biotechnol. 1998, 9: 67-78.
Article
CAS
PubMed
Google Scholar
Lemay S, Changchuin M, Singh AK: Cytokine gene expression in the MRL/lpr model of lupus nephritis. Kidney Int. 1996, 50: 85-93.
Article
CAS
PubMed
Google Scholar
Wu C, Dias P, Kumar S, Lauder JM, Singh S: Differential expression of serotonin 5-HT2 receptors during rat embryogenesis. Dev Neurosci. 1999, 21: 22-28. 10.1159/000017362.
Article
CAS
PubMed
Google Scholar
Finnegan MC, Goepel JR, Hancock BW, Goyns MH: Investigation of the expression of housekeeping genes in non-Hodgkin's lymphoma. Leuk Lymphoma. 1993, 10: 387-393.
Article
CAS
PubMed
Google Scholar
Bhatia P, Taylor WR, Greenberg AH, Wright JA: Comparison of glyceraldehyde-3-phosphate dehydrogenase and 28S-ribosomal RNA gene expression as RNA loading controls for northern blot analysis of cell lines of varying malignant potential. Anal Biochem. 1994, 216: 223-226. 10.1006/abio.1994.1028.
Article
CAS
PubMed
Google Scholar
Goidin D, Mamessier A, Staquet MJ, Schmitt D, Berthier-Vergnes O: Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and beta-actin genes as internal standard for quantitative comparison of mRNA levels in invasive and noninvasive human melanoma cell subpopulations. Anal Biochem. 2001, 295: 17-21. 10.1006/abio.2001.5171.
Article
CAS
PubMed
Google Scholar
Dent AL, Shaffer AL, Yu X, Allman D, Staudt LM: Control of inflammation, cytokine expression, and germinal center formation by BCL-6. Science. 1997, 276: 589-592. 10.1126/science.276.5312.589.
Article
CAS
PubMed
Google Scholar
Schmittgen TD, Zakrajsek BA: Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. J Biochem Biophys Methods. 2000, 46: 69-81. 10.1016/S0165-022X(00)00129-9.
Article
CAS
PubMed
Google Scholar
Huitorel P, Pantaloni D: Bundling of microtubules by glyceraldehyde-3-phosphate dehydrogenase and its modulation by ATP. Eur J Biochem. 1985, 150: 265-269.
Article
CAS
PubMed
Google Scholar
Zhang J, Snyder SH: Nitric oxide stimulates auto-ADP-ribosylation of glyceraldehyde-3-phosphate dehydrogenase. Proc Natl Acad Sci U S A. 1992, 89: 9382-9385.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hobbs MV, Weigle WO, Noonan DJ, Torbett BE, McEvilly RJ, Koch RJ, Cardenas GJ, Ernst DN: Patterns of cytokine gene expression by CD4+ T cells from young and old mice. J Immunol. 1993, 150: 3602-3614.
CAS
PubMed
Google Scholar
Bereta J, Bereta M: Stimulation of glyceraldehyde-3-phosphate dehydrogenase mRNA levels by endogenous nitric oxide in cytokine-activated endothelium. Biochem Biophys Res Commun. 1995, 217: 363-369. 10.1006/bbrc.1995.2785.
Article
CAS
PubMed
Google Scholar
Chang TJ, Juan CC, Yin PH, Chi CW, Tsay HJ: Up-regulation of beta-actin, cyclophilin and GAPDH in N1S1 rat hepatoma. Oncol Rep. 1998, 5: 469-471.
CAS
PubMed
Google Scholar
Blanquicett C, Johnson MR, Heslin M, Diasio RB: Housekeeping gene variability in normal and carcinomatous colorectal and liver tissues: applications in pharmacogenomic gene expression studies. Anal Biochem. 2002, 303: 209-214. 10.1006/abio.2001.5570.
Article
CAS
PubMed
Google Scholar
Lee PD, Sladek R, Greenwood CM, Hudson TJ: Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res. 2002, 12: 292-297. 10.1101/gr.217802.
Article
PubMed Central
PubMed
Google Scholar
Lander ES: Array of hope. Nat Genet. 1999, 21: 3-4. 10.1038/4427.
Article
CAS
PubMed
Google Scholar
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, Coller H, Loh ML, Downing JR, Caligiuri MA, Bloomfield CD, Lander ES: Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 1999, 286: 531-537. 10.1126/science.286.5439.531.
Article
CAS
PubMed
Google Scholar
Wang E, Miller L, Ohnmacht GA, Liu E, Marincola FM: High fidelity mRNA amplification for gene profiling using cDNA microarrays. Nature Biotech. 2000, 17: 457-459.
Google Scholar
Kawakami Y, Eliyahu S, Delgado CH, Robbins PF, Sakaguchi K, Appella E, Yannelli JR, Adema GJ, Miki T, Rosenberg SA: Identification of a human melanoma antigen recognized by tumor-infiltrating lymphocytes associated with in vivo tumor rejection. Proc Natl Acad Sci U S A. 1994, 91: 6458-6462.
Article
PubMed Central
CAS
PubMed
Google Scholar
Yang YH, Dudoit S, Luu P, Lin DM, Peng V, J Ngai, Speed TP: Normalization o fcDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 2002, 30: e15-10.1093/nar/30.4.e15.
Article
PubMed Central
PubMed
Google Scholar
Hills M: Allocation rules and their error rates. J Roy Stat Soc Ser. 1966, B28: 1-31.
Google Scholar
Lachenbruch PA, Mickey MR: Estimation of error rates in discriminant analysis. Technometrics. 1968, 10: 1-11.
Article
Google Scholar
Panelli JNMC, Hackett JA, Bettinotti M, Mixon A, Wunderlich J, Parker L, Restifo NP, Ferrone S, Marincola FM: Natural variation of the expression of HLA and endogenous antigen modulates CTL recognition in an in vitro melanoma model. Int J Cancer. 1999, 80: 781-790. 10.1002/(SICI)1097-0215(19990301)80:5<781::AID-IJC24>3.0.CO;2-A.
Article
PubMed Central
PubMed
Google Scholar
Riker A, Kammula US, Panelli MC, Wang E, Ohnmacht GA, Steinberg SM, Rosenberg SA, Marincola FM: Threshold levels of gene expression of the melanoma antigen gp100 correlate with tumor cell recognition by cytotoxic T-lymphocytes. Int J Cancer. 2000, 86: 818-826. 10.1002/(SICI)1097-0215(20000615)86:6<818::AID-IJC10>3.3.CO;2-N.
Article
CAS
PubMed
Google Scholar
Clark EA, Golub TR, Lander ES, Hynes RO: Genomic analysis of metastasis reveals an essential role for RhoC. Nature. 2000, 406: 532-535. 10.1038/35020106.
Article
CAS
PubMed
Google Scholar
Reimann I, Huth A, Thiele H, Thiele BJ: Suppression of 15-lipoxygenase synthesis by hnRNP E1 is dependent on repetitive nature of LOX mRNA 3'-UTR control element DICE. J Mol Biol. 2002, 315: 965-974. 10.1006/jmbi.2001.5315.
Article
CAS
PubMed
Google Scholar
Hijazi JNYM, Abati A, Fetsch P, Bettinotti M, Steinberg SM, Rosenberg SA, Marincola FM: Heterogeneous expression of melanoma-associated antigens (MAA) and HLA-A2 in metastatic melanoma in vivo. Int J Cancer. 1998, 75: 517-524. 10.1002/(SICI)1097-0215(19980209)75:4<517::AID-IJC5>3.3.CO;2-M.
Article
PubMed
Google Scholar
Ohnmacht GA, Wang E, Mocellin S, Abati A, Filie A, Fetsch PA, Riker A, Kammula US, Rosenberg SA, Marincola FM: Short term kinetics of tumor antigen expression in response to vaccination. J Immunol. 2001, 167: 1809-1820.
Article
CAS
PubMed
Google Scholar
Solanas M, Moral R, Escrich E: Unsuitability of using ribosomal RNA as loading control for Northern blot analyses related to the imbalance between messenger and ribosomal RNA content in rat mammary tumors. Anal Biochem. 2001, 288: 99-102. 10.1006/abio.2000.4889.
Article
CAS
PubMed
Google Scholar
Torma H, Karlsson T, Michaelsson G, Rollman O, Vahlquist A: Decreased mRNA levels of retinoic acid receptor alpha, retinoid X receptor alpha and thyroid hormone receptor alpha in lesional psoriatic skin. Acta Derm Venereol. 2000, 80: 4-9. 10.1080/000155500750012405.
Article
CAS
PubMed
Google Scholar
Yang IV, Chen E, Hasseman JP, Liang W, Frank BC, Wang S, Sharov V, Saeed AI, White J, Li J, Lee NH, Yeatman TJ, Quackenbush J: Within the fold: assessing differential expression measures and reproducibility in microarray assays. Genome Biol. 2002, 3: research0062-
PubMed Central
PubMed
Google Scholar
Wang E, Marincola FM: Amplification of small quantities of mRNA for transcript analysis. In DNA arrays – A Molecular Cloning Manual. Edited by: Bowtell D, Sambrook J. 2002, Cold Springs Harbor, NY: Cold Spring Harbor Laboratory Press, 204-213.
Google Scholar
Kammula US, Lee K-H, Riker A, Wang E, Ohnmacht GA, Rosenberg SA, Marincola FM: Functional analysis of antigen-specific T lymphocytes by serial measurement of gene expression in peripheral blood mononuclear cells and tumor specimens. J Immunol. 1999, 163: 6867-6879.
CAS
PubMed
Google Scholar
Marincola FM, Hijazi YM, Fetsch P, Salgaller ML, Rivoltini L, Cormier JN, Simonis TB, Duray PH, Herlyn M, Kawakami Y, Rosenberg SA: Analysis of expression of the melanoma associated antigens MART-1 and gp100 in metastatic melanoma cell lines and in in situ lesions. J Immunother. 1996, 19: 192-205.
Article
CAS
Google Scholar