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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Epimedium sagittatum (Sieb. Et Zucc.) Maxim, a traditional Chinese medicinal plant species, has been used extensively as genuine medicinal materials. Certain Epimedium species are endangered due to commercial ove...

    Authors: Shaohua Zeng, Gong Xiao, Juan Guo, Zhangjun Fei, Yanqin Xu, Bruce A Roe and Ying Wang
    Citation: BMC Genomics 2010 11:94
    Content type: Research article Published on:

  2. Bacterial invasive infection and host immune response is fundamental to the understanding of pathogen pathogenesis and the discovery of effective therapeutic drugs. However, there are very few experimental stu...

    Authors: Suyu Mei, Erik K. Flemington and Kun Zhang
    Citation: BMC Genomics 2018 19:505
    Content type: Research article Published on:

  3. Shigella is a Gram-negative facultative intracellular bacterium that causes bacillary dysentery in humans. Shigella invades cells of the colonic mucosa owing to its virulence plasmid-encoded Type 3 Secretion Syst...

    Authors: Ramón Cervantes-Rivera, Sophie Tronnet and Andrea Puhar
    Citation: BMC Genomics 2020 21:285
    Content type: Research article Published on:

  4. Advances in sequencing technologies have led to the release of reference genomes and annotations for multiple individuals within more well-studied systems. While each of these new genome assemblies shares sign...

    Authors: Patrick J. Monnahan, Jean-Michel Michno, Christine O’Connor, Alex B. Brohammer, Nathan M. Springer, Suzanne E. McGaugh and Candice N. Hirsch
    Citation: BMC Genomics 2020 21:281
    Content type: Methodology article Published on:

  5. The Neotropical fruit fly Drosophila paulistorum (Diptera: Drosophilidae) is a species complex in statu nascendi comprising six reproductively isolated semispecies, each harboring mutualistic Wolbachia strains. A...

    Authors: Guilherme C. Baião, Daniela I. Schneider, Wolfgang J. Miller and Lisa Klasson
    Citation: BMC Genomics 2019 20:465
    Content type: Research article Published on:

  6. Viruses undergo extensive evolutionary selection for efficient replication which effects, among others, their codon distribution. In the current study, we aimed at understanding the way evolution shapes the co...

    Authors: Oriah Mioduser, Eli Goz and Tamir Tuller
    Citation: BMC Genomics 2017 18:866
    Content type: Research article Published on:

  7. Transposable elements (TEs) are prominent features in many plant genomes, and patterns of TEs in closely related rice species are thus proposed as an ideal model to study TEs roles in the context of plant geno...

    Authors: Xukai Li, Kai Guo, Xiaobo Zhu, Peng Chen, Ying Li, Guosheng Xie, Lingqiang Wang, Yanting Wang, Staffan Persson and Liangcai Peng
    Citation: BMC Genomics 2017 18:55
    Content type: Research article Published on:

  8. The aim of this study was to analyze the genomic diversity of several Tropheryma whipplei strains by microarray-based comparative genomic hybridization. Fifteen clinical isolates originating from biopsy samples r...

    Authors: My-Van La, Nicolas Crapoulet, Pascal Barbry, Didier Raoult and Patricia Renesto
    Citation: BMC Genomics 2007 8:349
    Content type: Research article Published on:

  9. T cell acute lymphoblastic leukemia (T-ALL) defines a group of hematological malignancies with heterogeneous aggressiveness and highly variable outcome, making therapeutic decisions a challenging task. We trie...

    Authors: Li-Jun Peng, Yue-Bo Zhou, Mei Geng, Ekaterina Bourova-Flin, Florent Chuffart, Wei-Na Zhang, Tao Wang, Meng-Qing Gao, Meng-Ping Xi, Zhong-Yi Cheng, Jiao-Jiao Zhang, Yuan-Fang Liu, Bing Chen, Saadi Khochbin, Jin Wang, Sophie Rousseaux…
    Citation: BMC Genomics 2022 23:467
    Content type: Research Published on:

  10. Apis mellifera and Apis cerana are two sibling species of Apidae. Apis cerana is adept at collecting sporadic nectar in mountain and forest region and exhibits stiffer hardiness and acarid resistance as a result ...

    Authors: Hao Liu, Zi-Long Wang, Liu-Qing Tian, Qiu-Hong Qin, Xiao-Bo Wu, Wei-Yu Yan and Zhi-Jiang Zeng
    Citation: BMC Genomics 2014 15:744
    Content type: Research article Published on:

  12. Identifying the genes underlying fitness-related traits such as body size and male ornamentation can provide tools for conservation and management and are often subject to various selective pressures. Here we ...

    Authors: S. J. Anderson, S. D. Côté, J. H. Richard and A. B. A. Shafer
    Citation: BMC Genomics 2022 23:126
    Content type: Research Published on:

  13. Quorum sensing (QS) is a sophisticated cell-to-cell signalling mechanism that allows the coordination of important processes in microbial populations. The AI-1 and AI-2 autoinducer systems are among the best char...

    Authors: Iñigo de la Fuente, Saioa Manzano-Morales, David Sanz, Alicia Prieto and Jorge Barriuso
    Citation: BMC Genomics 2024 25:441
    Content type: Research Published on:

  14. Single-cell sequencing techniques are revolutionizing every field of biology by providing the ability to measure the abundance of biological molecules at a single-cell resolution. Although single-cell sequenci...

    Authors: Lucas Kuijpers, Bastian Hornung, Mirjam C. G. N. van den Hout - van Vroonhoven, Wilfred F. J. van IJcken, Frank Grosveld and Eskeatnaf Mulugeta
    Citation: BMC Genomics 2024 25:361
    Content type: Research Published on:

  15. Recent advances in massively parallel sequencing have increased the depth at which T cell receptor (TCR) repertoires can be probed by >3log10, allowing for saturation sequencing of immune repertoires. The reso...

    Authors: Phuong Nguyen, Jing Ma, Deqing Pei, Caroline Obert, Cheng Cheng and Terrence L Geiger
    Citation: BMC Genomics 2011 12:106
    Content type: Research article Published on:

  16. The degree to which adaptation to same environment is determined by similar molecular mechanisms, is a topic of broad interest in evolutionary biology, as an indicator of evolutionary predictability. We wished...

    Authors: Sylvie Gimenez, Imène Seninet, Marion Orsucci, Philippe Audiot, Nicolas Nègre, Kiwoong Nam, Réjane Streiff and Emmanuelle d’Alençon
    Citation: BMC Genomics 2021 22:606
    Content type: Research Published on:

  17. Feed efficiency (FE) is an indicator of efficiency in converting energy and nutrients from feed into a tissue that is of major environmental and economic significance. The molecular mechanisms contributing to ...

    Authors: Justyna Horodyska, Klaus Wimmers, Henry Reyer, Nares Trakooljul, Anne Maria Mullen, Peadar G. Lawlor and Ruth M. Hamill
    Citation: BMC Genomics 2018 19:791
    Content type: Research article Published on:

  18. Most of the biological processes rely on the formation of protein complexes. Investigation of protein-protein interactions (PPI) is therefore essential for understanding of cellular functions. It is advantageo...

    Authors: Andrea Fiebitz, Lajos Nyarsik, Bernard Haendler, Yu-Hui Hu, Florian Wagner, Sabine Thamm, Hans Lehrach, Michal Janitz and Dominique Vanhecke
    Citation: BMC Genomics 2008 9:68
    Content type: Methodology article Published on:

  19. Pepper (Capsicum annuum L.) is one of the most important vegetable crops worldwide. However, its yield and fruit quality can be severely threatened by several pathogens. The plant nucleotide-binding site (NBS)-le...

    Authors: Hongjian Wan, Wei Yuan, Qingjing Ye, Rongqing Wang, Meiying Ruan, Zhimiao Li, Guozhi Zhou, Zhuping Yao, Jing Zhao, Shujun Liu and Yuejian Yang
    Citation: BMC Genomics 2012 13:502
    Content type: Research article Published on:

  20. Legumes are the second-most important crop family in agriculture for its economic and nutritional values. Disease resistance (R-) genes play an important role in responding to pathogen infections in plants. To fu...

    Authors: Fengya Zheng, Haiyang Wu, Rongzhi Zhang, Shiming Li, Weiming He, Fuk-Ling Wong, Genying Li, Shancen Zhao and Hon-Ming Lam
    Citation: BMC Genomics 2016 17:402
    Content type: Research article Published on:

  21. The largest of the tuna species, Atlantic bluefin tuna (Thunnus thynnus), inhabits the North Atlantic Ocean and the Mediterranean Sea and is considered to be an endangered species, largely a consequence of overfi...

    Authors: Željka Trumbić, Michaël Bekaert, John B. Taggart, James E. Bron, Karim Gharbi and Ivona Mladineo
    Citation: BMC Genomics 2015 16:1007
    Content type: Research article Published on:

  22. Garlic is cultivated and consumed worldwide as a popular condiment and green vegetable with medicinal and neutraceutical properties. Garlic cultivars do not produce seeds, and therefore, this plant has not bee...

    Authors: Rina Kamenetsky, Adi Faigenboim, Einat Shemesh Mayer, Tomer Ben Michael, Chen Gershberg, Sagie Kimhi, Itzhak Esquira, Sarit Rohkin Shalom, Dani Eshel, Haim D Rabinowitch and Amir Sherman
    Citation: BMC Genomics 2015 16:12
    Content type: Research article Published on:

  23. Little is known about the interplay between n-3 fatty acids and genetic variants for diabetes-related traits at the genome-wide level. The present study aimed to examine variance contributions of genotype by e...

    Authors: Ju-Sheng Zheng, Chao-Qiang Lai, Laurence D Parnell, Yu-Chi Lee, Jian Shen, Caren E Smith, Patricia Casas-Agustench, Kris Richardson, Duo Li, Sabrina E Noel, Katherine L Tucker, Donna K Arnett, Ingrid B Borecki and José M Ordovás
    Citation: BMC Genomics 2014 15:781
    Content type: Research article Published on:

  24. Studies suggest that the related proteins nucleoplasmin and nucleophosmin (also called B23, NO38 or numatrin) are nuclear chaperones that mediate the assembly of nucleosomes and ribosomes, respectively, and th...

    Authors: Gregory M Shackleford, Amit Ganguly and Craig A MacArthur
    Citation: BMC Genomics 2001 2:8
    Content type: Research article Published on:

  25. Long non-coding RNAs (lncRNAs) structurally resemble mRNAs and exert crucial effects on host immune defense against pathogen infection. Japanese flounder (Paralichthys olivaceus) is an economically important mari...

    Authors: Xianhui Ning and Li Sun
    Citation: BMC Genomics 2021 22:447
    Content type: Research article Published on:

  26. The incidence of poor semen quality and sub-fertility/infertility is higher in crossbred as compared to Zebu males. Several attempts have been made to understand the possible reasons for higher incidence of fe...

    Authors: Kamaraj Elango, Arumugam Kumaresan, Ankur Sharma, Pradeep Nag, Mani Arul Prakash, Manish Kumar Sinha, Ayyasamy Manimaran, Ebenezer Samuel King John Peter, Sakthivel Jeyakumar, Sellappan Selvaraju, Kerekoppa P. Ramesha and Tirtha K. Datta
    Citation: BMC Genomics 2020 21:502
    Content type: Research article Published on:

  27. In plants, RNA silencing plays a fundamental role as defence mechanism against viruses. During last years deep-sequencing technology has allowed to analyze the sRNA profile of a large variety of virus-infected...

    Authors: Mari Carmen Herranz, Jose Antonio Navarro, Evelien Sommen and Vicente Pallas
    Citation: BMC Genomics 2015 16:117
    Content type: Research article Published on:

  28. Fructose-1,6-bisphosphatase (FBP) is a key enzyme in the plant sucrose synthesis pathway, in the Calvin cycle, and plays an important role in photosynthesis regulation in green plants. However, no systemic ana...

    Authors: Qún Gě, Yànli Cūi, Jùnwén Lǐ, Jǔwǔ Gōng, Quánwěi Lú, Péngtāo Lǐ, Yùzhēn Shí, Hǎihóng Shāng, Àiyīng Liú, Xiǎoyīng Dèng, Jìngtāo Pān, Qúanjiā Chén, Yǒulù Yuán and Wànkuí Gǒng
    Citation: BMC Genomics 2020 21:379
    Content type: Research article Published on:

  29. Avian poxviruses are important pathogens of both wild and domestic birds. To date, seven isolates from subclades A and B and one from proposed subclade E, have had their genomes completely sequenced. The genom...

    Authors: Olivia Carulei, Nicola Douglass and Anna-Lise Williamson
    Citation: BMC Genomics 2017 18:947
    Content type: Research Article Published on:

  30. Chronic bacterial infections occur as a result of the infecting pathogen’s ability to live within a biofilm, hence escaping the detrimental effects of antibiotics and the immune defense system. Burkholderia pseud...

    Authors: Chui-Yoke Chin, Yuka Hara, Ahmad-Kamal Ghazali, Soon-Joo Yap, Cin Kong, Yee-Chin Wong, Naufal Rozali, Seng-Fook Koh, Chee-Choong Hoh, Savithri D. Puthucheary and Sheila Nathan
    Citation: BMC Genomics 2015 16:471
    Content type: Research article Published on:

  32. In an intercross between the SWR/J and BALB/c mouse strains, the pulmonary adenoma progression 1 (Papg1) locus on chromosome 4 modulates lung tumor size, one of several measures of lung tumor progression. This lo...

    Authors: Alice Dassano, Sara Noci, Federica Galbiati, Francesca Colombo, Gaia Trincucci, Angela Pettinicchio, Tommaso A Dragani and Giacomo Manenti
    Citation: BMC Genomics 2013 14:152
    Content type: Research article Published on:

  33. Divergent genetic responses to the same environmental pressures may lead sympatric ecological speciation possible. Such speciation process possibly explains rapid sympatric speciation of island species. Two is...

    Authors: Bing-Hong Huang, Yuan-Chien Lin, Chih-Wei Huang, Hsin-Pei Lu, Min-Xin Luo and Pei-Chun Liao
    Citation: BMC Genomics 2018 19:692
    Content type: Research article Published on:

  34. Sugarcane smut, which is caused by Sporisorium scitamineum, has been threatening global sugarcane production. Breeding smut resistant sugarcane varieties has been proven to be the most effective method of control...

    Authors: Yachun Su, Liping Xu, Zhuqing Wang, Qiong Peng, Yuting Yang, Yun Chen and Youxiong Que
    Citation: BMC Genomics 2016 17:800
    Content type: Research article Published on:

  35. Understanding the basis for volatile organic compound (VOC) biosynthesis and regulation is of great importance for the genetic improvement of fruit flavor. Lactones constitute an essential group of fatty acid-...

    Authors: José F Sánchez-Sevilla, Eduardo Cruz-Rus, Victoriano Valpuesta, Miguel A Botella and Iraida Amaya
    Citation: BMC Genomics 2014 15:218
    Content type: Research article Published on:

  36. In vitro systems have inherent limitations in their ability to model whole organism gene responses, which must be identified and appropriately considered when developing predictive biomarkers of in vivo toxicity....

    Authors: Edward Dere, Darrell R Boverhof, Lyle D Burgoon and Timothy R Zacharewski
    Citation: BMC Genomics 2006 7:80
    Content type: Research article Published on:

  37. The passion fruit (Passiflora edulis) is a tropical crop of economic importance both for juice production and consumption as fresh fruit. The juice is also used in concentrate blends that are consumed worldwide. ...

    Authors: Anselmo Azevedo Santos, Helen Alves Penha, Arnaud Bellec, Carla de Freitas Munhoz, Andrea Pedrosa-Harand, Hélène Bergès and Maria Lucia Carneiro Vieira
    Citation: BMC Genomics 2014 15:816
    Content type: Research article Published on:

  38. Early maturity is one of the most important and complex agronomic traits in upland cotton (Gossypium hirsutum L). To dissect the genetic architecture of this agronomically important trait, a population consisting...

    Authors: Junji Su, Chaoyou Pang, Hengling Wei, Libei Li, Bing Liang, Caixiang Wang, Meizhen Song, Hantao Wang, Shuqi Zhao, Xiaoyun Jia, Guangzhi Mao, Long Huang, Dandan Geng, Chengshe Wang, Shuli Fan and Shuxun Yu
    Citation: BMC Genomics 2016 17:687
    Content type: Research article Published on:

  39. The identification of genes and uncovering the role they play in diseases is an important and complex challenge. Genome-wide linkage and association studies have made advancements in identifying genetic varian...

    Authors: Fiona Browne, Haiying Wang and Huiru Zheng
    Citation: BMC Genomics 2015 16(Suppl 9):S2
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 9

  40. The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused global disruption of human health and activity. Being able to trace the early outbreak of SARS-CoV-2 within a locality can inform pub...

    Authors: Longhua Guo, James Boocock, Evann E. Hilt, Sukantha Chandrasekaran, Yi Zhang, Chetan Munugala, Laila Sathe, Noah Alexander, Valerie A. Arboleda, Jonathan Flint, Eleazar Eskin, Chongyuan Luo, Shangxin Yang, Omai B. Garner, Yi Yin, Joshua S. Bloom…
    Citation: BMC Genomics 2022 23:260
    Content type: Research Published on:

  41. Transcriptome sequencing data has become an integral component of modern genetics, genomics and evolutionary biology. However, despite advances in the technologies of DNA sequencing, such data are lacking for ...

    Authors: Maria D Logacheva, Artem S Kasianov, Dmitriy V Vinogradov, Tagir H Samigullin, Mikhail S Gelfand, Vsevolod J Makeev and Aleksey A Penin
    Citation: BMC Genomics 2011 12:30
    Content type: Research article Published on:

  42. Asian buffaloes (Bubalus bubalis) have an important socio-economic role. The majority of the population is situated in developing countries. Due to the scarce resources in these countries, very few species-specif...

    Authors: GMF de Camargo, RR Aspilcueta-Borquis, MRS Fortes, R. Porto-Neto, DF Cardoso, DJA Santos, SA Lehnert, A. Reverter, SS Moore and H. Tonhati
    Citation: BMC Genomics 2015 16:872
    Content type: Research article Published on:

  43. Reproduction is a key feature of the sustainability of a species and thus represents an important component in livestock genetic improvement programs. Most reproductive traits are lowly heritable. In order to ...

    Authors: Jason J Reding, Robert R van der Westhuizen, Donagh P Berry and Este van Marle-Köster
    Citation: BMC Genomics 2023 24:480
    Content type: Research Published on:

  44. Geoherb usually represents high-quality medicinal herbs with better clinical therapeutic effects, and elucidating the geoherbalism is essential for the quality improvement of traditional Chinese Medicine. Howe...

    Authors: Tao Zhou, Yadi Tang, Lipan Zhou, Jie Liu, Yang Pu, Fan Jiang, Jian Wang and Xumei Wang
    Citation: BMC Genomics 2024 25:212
    Content type: Research Published on:

  46. In the past several years, the use of resistant starch (RS) as prebiotic has extensively been studied in pigs, and this mostly in the critical period around weaning. RS is believed to exert beneficial effects ...

    Authors: Martine Schroyen, Julie Leblois, Julie Uerlings, Bing Li, Ester Arévalo Sureda, Sébastien Massart, José Wavreille, Jérôme Bindelle and Nadia Everaert
    Citation: BMC Genomics 2020 21:439
    Content type: Research article Published on:

  47. Melon (Cucumis melo), an economically important vegetable crop, belongs to the Cucurbitaceae family which includes several other important crops such as watermelon, cucumber, and pumpkin. It has served as a model...

    Authors: Christian Clepet, Tarek Joobeur, Yi Zheng, Delphine Jublot, Mingyun Huang, Veronica Truniger, Adnane Boualem, Maria Elena Hernandez-Gonzalez, Ramon Dolcet-Sanjuan, Vitaly Portnoy, Albert Mascarell-Creus, Ana I Caño-Delgado, Nurit Katzir, Abdelhafid Bendahmane, James J Giovannoni, Miguel A Aranda…
    Citation: BMC Genomics 2011 12:252
    Content type: Research article Published on:

  48. A betabaculovirus (DisaGV) was isolated from Diatraea saccharalis (Lepidoptera: Crambidae), one of the most important insect pests of the sugarcane and other monocot cultures in Brazil.

    Authors: Daniel M P. Ardisson-Araújo, Bruna T. Pereira, Fernando L. Melo, Bergmann M. Ribeiro, Sônia N. Báo, Paolo M. de A. Zanotto, Flávio Moscardi, Elliot W. Kitajima, Daniel R. Sosa-Gomez and José L. C. Wolff
    Citation: BMC Genomics 2016 17:94
    Content type: Research article Published on:

  49. Dinoflagellates are important marine primary producers and grazers and cause toxic "red tides". These taxa are characterized by many unique features such as immense genomes, the absence of nucleosomes, and pho...

    Authors: Jeremiah D Hackett, Todd E Scheetz, Hwan Su Yoon, Marcelo B Soares, Maria F Bonaldo, Thomas L Casavant and Debashish Bhattacharya
    Citation: BMC Genomics 2005 6:80
    Content type: Research article Published on:

  50. This study used a genome-wide screen of gene expression to better understand the metabolic and functional differences between commercially valuable intramuscular fat (IMF) and commercially wasteful subcutaneou...

    Authors: Nicholas J. Hudson, Antonio Reverter, William J. Griffiths, Eylan Yutuc, Yuqin Wang, Angela Jeanes, Sean McWilliam, David W. Pethick and Paul L. Greenwood
    Citation: BMC Genomics 2020 21:77
    Content type: Research article Published on:

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