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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 17 of 128

  1. Roses (Rosa sp.), which belong to the family Rosaceae, are the most economically important ornamental plants—making up 30% of the floriculture market. However, given high demand for roses, rose breeding programs ...

    Authors: Jungeun Kim, June Hyun Park, Chan Ju Lim, Jae Yun Lim, Jee-Youn Ryu, Bong-Woo Lee, Jae-Pil Choi, Woong Bom Kim, Ha Yeon Lee, Yourim Choi, Donghyun Kim, Cheol-Goo Hur, Sukweon Kim, Yoo-Sun Noh, Chanseok Shin and Suk-Yoon Kwon
    Citation: BMC Genomics 2012 13:657
    Content type: Research article Published on:

  2. Schizochytrium limacinum holds significant value utilized in the industrial-scale synthesis of natural DHA. Nitrogen-limited treatment can effectively increase the content of fatty acids and DHA, but there is cur...

    Authors: Duo Chen, Jing Chen, Rongchun Dai, Xuehai Zheng, Yuying Han, Youqiang Chen and Ting Xue
    Citation: BMC Genomics 2024 25:141
    Content type: Research Published on:

  3. As a first step to explore the possible relationships existing between the effects of low oxygen pressure in the first trimester placenta and placental pathologies developing from mid-gestation, two subtracted...

    Authors: Daniel Vaiman, Françoise Mondon, Alexandra Garcès-Duran, Thérèse-Marie Mignot, Brigitte Robert, Régis Rebourcet, Hélène Jammes, Sonia T Chelbi, Frédérique Quetin, Geoffrey Marceau, Vincent Sapin, François Piumi, Jean-Louis Danan, Virginie Rigourd, Bruno Carbonne and Françoise Ferré
    Citation: BMC Genomics 2005 6:111
    Content type: Research article Published on:

  4. Cotton (Gossypium hirsutum) is considered a fairly salt tolerant crop however, salinity can still cause significant economic losses by affecting the yield and deteriorating the fiber quality. We studied a salt-to...

    Authors: Delong Wang, Xuke Lu, Xiugui Chen, Shuai Wang, Junjuan Wang, Lixue Guo, Zujun Yin, Quanjia Chen and Wuwei Ye
    Citation: BMC Genomics 2020 21:838
    Content type: Research article Published on:

  5. MicroRNAs (miRs) are an abundant class of small non-coding RNAs (~22 nt) that reprogram gene expression by targeting mRNA degradation and translational disruption. An emerging concept implicates miR coupling w...

    Authors: Andrea Masotti, Gloria Donninelli, Letizia Da Sacco, Barbara Varano, Manuela Del Cornò and Sandra Gessani
    Citation: BMC Genomics 2015 16:480
    Content type: Research article Published on:

  6. Penicillium expansum is a destructive phytopathogen that causes decay in deciduous fruits during postharvest handling and storage. During colonization the fungus secretes D-gluconic ac...

    Authors: Shiri Barad, Noa Sela, Dilip Kumar, Amit Kumar-Dubey, Nofar Glam-Matana, Amir Sherman and Dov Prusky
    Citation: BMC Genomics 2016 17:330
    Content type: Research article Published on:

  7. There are two major genetic types of Epstein-Barr Virus (EBV): type 1 (EBV-1) and type 2 (EBV-2). EBV functions by manipulating gene expression in host B cells, using virus-encoded gene regulatory proteins inc...

    Authors: Kenyatta C. M. F. Viel, Sreeja Parameswaran, Omer A. Donmez, Carmy R. Forney, Matthew R. Hass, Cailing Yin, Sydney H. Jones, Hayley K. Prosser, Arame A. Diouf, Olivia E. Gittens, Lee E. Edsall, Xiaoting Chen, Hope Rowden, Katelyn A. Dunn, Rui Guo, Andrew VonHandorf…
    Citation: BMC Genomics 2024 25:273
    Content type: Research Published on:

  9. Understanding the transcriptional regulation mechanisms in response to environmental challenges is of fundamental importance in biology. Transcription factors associated to response elements and the chromatin ...

    Authors: Jesus Hernandez-Romano, Francisco J Carlos-Rivera, Heladia Salgado, Hector Lamadrid-Figueroa, Veronica Valverde-Garduño, Mario H Rodriguez and Jesus Martinez-Barnetche
    Citation: BMC Genomics 2008 9:326
    Content type: Research article Published on:

  11. Glucocorticoids (GCs) are widely used anti-inflammatory drugs. While useful in clinical practice, patients taking GCs often suffer from skeletal side effects including growth retardation in children and adoles...

    Authors: Claudine G James, Veronica Ulici, Jan Tuckermann, T Michael Underhill and Frank Beier
    Citation: BMC Genomics 2007 8:205
    Content type: Research article Published on:

  12. To understand cancer-related modifications to transcriptional programs requires detailed knowledge about the activation of signal-transduction pathways and gene expression programs. To investigate the mechanis...

    Authors: Fabio Parisi, Bernhard Sonderegger, Pratyaksha Wirapati, Mauro Delorenzi and Felix Naef
    Citation: BMC Genomics 2009 10:381
    Content type: Research article Published on:

  13. Current ChIP-seq studies are interested in comparing multiple epigenetic profiles across several cell types and tissues simultaneously for studying constitutive and differential regulation. Simultaneous analys...

    Authors: Kuan-Bei Chen, Ross Hardison and Yu Zhang
    Citation: BMC Genomics 2014 15(Suppl 9):S12
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 9

  15. The barley-Puccinia hordei (barley leaf rust) pathosystem is a model for investigating partial disease resistance in crop plants and genetic mapping of phenotypic resistance has identified several quantitative tr...

    Authors: Xinwei Chen, Rients E Niks, Peter E Hedley, Jenny Morris, Arnis Druka, Thierry C Marcel, Anton Vels and Robbie Waugh
    Citation: BMC Genomics 2010 11:629
    Content type: Research article Published on:

  16. The requirement of a large amount of high-quality RNA is a major limiting factor for microarray experiments using biopsies. An average microarray experiment requires 10–100 μg of RNA. However, due to their sma...

    Authors: Jörg Schneider, Andreas Buneß, Wolfgang Huber, Joachim Volz, Petra Kioschis, Mathias Hafner, Annemarie Poustka and Holger Sültmann
    Citation: BMC Genomics 2004 5:29
    Content type: Research article Published on:

  17. The neonatal murine heart is able to regenerate after severe injury; this capacity however, quickly diminishes and it is lost within the first week of life. DNA methylation is an epigenetic mechanism which pla...

    Authors: Bartosz Górnikiewicz, Anna Ronowicz, Michał Krzemiński and Paweł Sachadyn
    Citation: BMC Genomics 2016 17:231
    Content type: Research article Published on:

  19. In species with exalbuminous seeds, the endosperm is eventually consumed and its space occupied by the embryo during seed development. However, the main constituent of the early developing seed is the liquid e...

    Authors: Yi Huang, Liang Chen, Liping Wang, Kannan Vijayan, Sieu Phan, Ziying Liu, Lianglu Wan, Andrew Ross, Daoquan Xiang, Raju Datla, Youlian Pan and Jitao Zou
    Citation: BMC Genomics 2009 10:256
    Content type: Research article Published on:

  20. Bacterial invasion during sepsis induces disregulated systemic responses that could lead to fatal lung failure. The purpose of this study was to relate the temporal dynamics of gene expression to the pathophys...

    Authors: Hua Zhu, Yuhong Tang, Lacramioara Ivanciu, Michael Centola, Cristina Lupu, Fletcher B Taylor Jr and Florea Lupu
    Citation: BMC Genomics 2007 8:58
    Content type: Research article Published on:

  21. The ZNF217 gene, encoding a C2H2 zinc finger protein, is located at 20q13 and found amplified and overexpressed in greater than 20% of breast tumors. Current studies indicate ZNF217 drives tumorigenesis, yet the ...

    Authors: Seth Frietze, Henriette O’Geen, Laurie E Littlepage, Catalina Simion, Colleen A Sweeney, Peggy J Farnham and Sheryl R Krig
    Citation: BMC Genomics 2014 15:520
    Content type: Research article Published on:

  22. Gene bodies are the most evolutionarily conserved targets of DNA methylation in eukaryotes. However, the regulatory functions of gene body DNA methylation remain largely unknown. DNA methylation in insects app...

    Authors: Kevin Flores, Florian Wolschin, Jason J Corneveaux, April N Allen, Matthew J Huentelman and Gro V Amdam
    Citation: BMC Genomics 2012 13:480
    Content type: Research article Published on:

  23. Plants adapted to diverse environments on Earth throughout their evolutionary history, and developed mechanisms to thrive in a variety of terrestrial habitats. When plants are grown in the novel environment of...

    Authors: Mingqi Zhou, Natasha J. Sng, Collin E. LeFrois, Anna-Lisa Paul and Robert J. Ferl
    Citation: BMC Genomics 2019 20:205
    Content type: Research article Published on:

  24. Genes in bacteria may be organised into operons, leading to strict co-expression of the genes that participate in the same operon. However, comparisons between different bacterial genomes have shown that much ...

    Authors: Marit S Bratlie, Jostein Johansen and Finn Drabløs
    Citation: BMC Genomics 2010 11:71
    Content type: Research article Published on:

  25. The anthocyanins are highly enriched in eggplants (Solanum melongena L.) with purple peel. However, our previous study showed that anthocyanins biosynthesis in eggplant cultivar ‘Lanshan Hexian’ was completely re...

    Authors: Jing Li, Yong-Jun He, Lu Zhou, Yang Liu, Mingmin Jiang, Li Ren and Huoying Chen
    Citation: BMC Genomics 2018 19:201
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:324

  26. Adenovirus protein, Gam1, triggers the proteolytic destruction of the E1 SUMO-activating enzyme. Microinjection of an empirically determined amount of Gam1 mRNA into one-cell Xenopus embryos can reduce SUMOylatio...

    Authors: Michelle M. Bertke, Kyle M. Dubiak, Laura Cronin, Erliang Zeng and Paul W. Huber
    Citation: BMC Genomics 2019 20:386
    Content type: Research article Published on:

  27. MicroRNAs are short (~21 base) single stranded RNAs that, in plants, are generally coded by specific genes and cleaved specifically from hairpin precursors. MicroRNAs are critical for the regulation of multipl...

    Authors: Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè and David S Horner
    Citation: BMC Genomics 2009 10:558
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2010 11:109

  29. Melon (Cucumis melo L.) is a commercially important fruit crop that is cultivated worldwide. The melon research community has recently benefited from the determination of a complete draft genome sequence and the ...

    Authors: Daniel Gonzalez-Ibeas, José Blanca, Livia Donaire, Montserrat Saladié, Albert Mascarell-Creus, Ana Cano-Delgado, Jordi Garcia-Mas, Cesar Llave and Miguel A Aranda
    Citation: BMC Genomics 2011 12:393
    Content type: Research article Published on:

  30. Brassinosteroids (BRs) are a group of essential steroid hormones involved in diverse developmental and physiological processes in plants. The Brassinazole-resistant 1 (BZR1) transcription factors are key compo...

    Authors: Chunliu Zuo, Lan Zhang, Xinyue Yan, Xinyue Guo, Qing Zhang, Songyang Li, Yanling Li, Wen Xu, Xiaoming Song, Jinpeng Wang and Min Yuan
    Citation: BMC Genomics 2022 23:568
    Content type: Research Published on:

  31. Target genes of a transcription factor (TF) Pou5f1 (Oct3/4 or Oct4), which is essential for pluripotency maintenance and self-renewal of embryonic stem (ES) cells, have previously been identified based on their r...

    Authors: Alexei A Sharov, Shinji Masui, Lioudmila V Sharova, Yulan Piao, Kazuhiro Aiba, Ryo Matoba, Li Xin, Hitoshi Niwa and Minoru SH Ko
    Citation: BMC Genomics 2008 9:269
    Content type: Research article Published on:

  32. The protean chemical properties of mercury have long made it attractive for diverse applications, but its toxicity requires great care in its use, disposal, and recycling. Mercury occurs in multiple chemical f...

    Authors: Stephen P. LaVoie and Anne O. Summers
    Citation: BMC Genomics 2018 19:52
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:268

  33. Most of our understanding on the social behavior and genomics of bees and other social insects is centered on the Western honey bee, Apis mellifera. The genus Apis, however, is a highly derived branch comprising ...

    Authors: Flávia C. de Paula Freitas, Anete P. Lourenço, Francis M. F. Nunes, Alexandre R. Paschoal, Fabiano C. P. Abreu, Fábio O. Barbin, Luana Bataglia, Carlos A. M. Cardoso-Júnior, Mário S. Cervoni, Saura R. Silva, Fernanda Dalarmi, Marco A. Del Lama, Thiago S. Depintor, Kátia M. Ferreira, Paula S. Gória, Michael C. Jaskot…
    Citation: BMC Genomics 2020 21:386
    Content type: Research article Published on:

  34. Pacific salmon (Oncorhynchus spp.) serve as good biological indicators of the breadth of climate warming effects on fish because their anadromous life cycle exposes them to environmental challenges in both marine...

    Authors: Arash Akbarzadeh, Oliver P Günther, Aimee Lee Houde, Shaorong Li, Tobi J Ming, Kenneth M Jeffries, Scott G Hinch and Kristina M Miller
    Citation: BMC Genomics 2018 19:749
    Content type: Research article Published on:

  35. Eukaryotic genomes are organized in extended domains with distinct features intimately linking genome structure, replication pattern and chromatin state. Recently we identified a set of long late replicating e...

    Authors: Vladimir N Babenko, Igor V Makunin, Irina V Brusentsova, Elena S Belyaeva, Daniil A Maksimov, Stepan N Belyakin, Peter Maroy, Lyubov A Vasil'eva and Igor F Zhimulev
    Citation: BMC Genomics 2010 11:318
    Content type: Research article Published on:

  36. The filamentous fungus Aspergillus nidulans has been a tractable model organism for cell biology and genetics for over 60 years. It is among a large number of Aspergilli whose genomes have been sequenced since 20...

    Authors: Christopher Sibthorp, Huihai Wu, Gwendolyn Cowley, Prudence W H Wong, Paulius Palaima, Igor Y Morozov, Gareth D Weedall and Mark X Caddick
    Citation: BMC Genomics 2013 14:847
    Content type: Research article Published on:

  37. The production of enzymes by an industrial strain requires a complex adaption of the bacterial metabolism to the conditions within the fermenter. Regulatory events within the process result in a dynamic change...

    Authors: Sandra Wiegand, Sascha Dietrich, Robert Hertel, Johannes Bongaerts, Stefan Evers, Sonja Volland, Rolf Daniel and Heiko Liesegang
    Citation: BMC Genomics 2013 14:667
    Content type: Research article Published on:

  38. Trifoliate orange (Poncirus trifoliata (L.) Raf.) is extremely cold hardy after a full acclimation; however the underlying molecular mechanisms underlying this economically valuable trait remain poorly understood...

    Authors: Min Wang, Xiaona Zhang and Ji-Hong Liu
    Citation: BMC Genomics 2015 16:555
    Content type: Research article Published on:

  39. In the light of dengue being the fastest growing transmissible disease, there is a dire need to identify the mechanisms regulating the behaviour of the main vector Aedes aegypti. Disease transmission requires the...

    Authors: Sharon Rose Hill, Tanvi Taparia and Rickard Ignell
    Citation: BMC Genomics 2021 22:71
    Content type: Research article Published on:

  40. MicroRNAs (miRNAs) are important post-transcriptional regulators involved in the control of a range of processes, including symbiotic interactions in plants. MiRNA involvement in arbuscular mycorrhizae (AM) sy...

    Authors: Alex C. Johnson, Thomas H. Pendergast IV, Srinivasa Chaluvadi, Jeffrey L. Bennetzen and Katrien M. Devos
    Citation: BMC Genomics 2022 23:688
    Content type: Research Published on:

  41. Abiotic stresses which include drought and heat are amongst the main limiting factors for plant growth and crop productivity. In the field, these stress types are rarely presented individually and plants are o...

    Authors: Stephanie M Johnson, Fei-Ling Lim, Aliza Finkler, Hillel Fromm, Antoni R Slabas and Marc R Knight
    Citation: BMC Genomics 2014 15:456
    Content type: Research article Published on:

  42. During eye lens development the embryonic vasculature regresses leaving the lens without a direct oxygen source. Both embryonically and throughout adult life, the lens contains a decreasing oxygen gradient fro...

    Authors: Joshua Disatham, Lisa Brennan, Daniel Chauss, Jason Kantorow, Behdad Afzali and Marc Kantorow
    Citation: BMC Genomics 2021 22:497
    Content type: Research Published on:

  43. Expression quantitative trait loci (eQTL) studies provide insights into regulatory mechanisms underlying disease risk. Expanding studies of gene regulation to underexplored populations and to medically relevan...

    Authors: Konstantinos Rouskas, Efthymia A. Katsareli, Charalampia Amerikanou, Alexandros C. Dimopoulos, Stavros Glentis, Alexandra Kalantzi, Anargyros Skoulakis, Nikolaos Panousis, Halit Ongen, Deborah Bielser, Alexandra Planchon, Luciana Romano, Vaggelis Harokopos, Martin Reczko, Panagiotis Moulos, Ioannis Griniatsos…
    Citation: BMC Genomics 2023 24:442
    Content type: Research Published on:

  44. The potential impact of genetically modified (GM) plants on human health has attracted much attention worldwide, and the issue remains controversial. This is in sharp contrast to the broad acceptance of plants...

    Authors: Lifen Gao, Yinghao Cao, Zhihui Xia, Guanghuai Jiang, Guozhen Liu, Weixiong Zhang and Wenxue Zhai
    Citation: BMC Genomics 2013 14:738
    Content type: Research article Published on:

  45. The increasing number of infections caused by strains of Klebsiella pneumoniae that are resistant to multiple antibiotics has developed into a major medical problem worldwide. The development of next-generation s...

    Authors: Joo-Hyun Seo, Jay Sung-Joong Hong, Donghyuk Kim, Byung-Kwan Cho, Tzu-Wen Huang, Shih-Feng Tsai, Bernhard O Palsson and Pep Charusanti
    Citation: BMC Genomics 2012 13:679
    Content type: Research article Published on:

  46. Iron-deficiency leads to the induction of genes related to intestinal iron absorption and homeostasis. By analyzing a large GeneChip® dataset from the rat intestine, we identified a large cluster of 228 genes tha...

    Authors: James F Collins and Zihua Hu
    Citation: BMC Genomics 2007 8:420
    Content type: Research article Published on:

  47. Growth in fishes is regulated via many environmental and physiological factors and is shaped by the genetic background of each individual. Previous microarray studies of salmonid growth have examined fish expe...

    Authors: Andrea L Kocmarek, Moira M Ferguson and Roy G Danzmann
    Citation: BMC Genomics 2014 15:57
    Content type: Research article Published on:

  48. Piscine reovirus (PRV) has been associated with the serious disease known as Heart and Skeletal Muscle Inflammation (HSMI) in cultured Atlantic salmon Salmo salar in Norway. PRV is also prevalent in wild and farm...

    Authors: Mark P. Polinski, Julia C. Bradshaw, Sabrina M. Inkpen, Jon Richard, Camilla Fritsvold, Trygve T. Poppe, Matthew L. Rise, Kyle A. Garver and Stewart C. Johnson
    Citation: BMC Genomics 2016 17:848
    Content type: Research article Published on:

  49. As a diverse and abundant class of endogenous RNAs, circular RNAs (circRNAs) participate in various biological processes including cell proliferation and apoptosis. Nevertheless, few researchers have investiga...

    Authors: Jiale Yun, Xiaoyu Huang, Chang Liu, Mingyue Shi, Wenxia Li, Jin Niu, Chunbo Cai, Yang Yang, Pengfei Gao, Xiaohong Guo, Bugao Li, Chang Lu and Guoqing Cao
    Citation: BMC Genomics 2023 24:196
    Content type: Research Published on:

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