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  1. A complete understanding of barnacle adhesion remains elusive as the process occurs within and beneath the confines of a rigid calcified shell. Barnacle cement is mainly proteinaceous and several individual pr...

    Authors: Zheng Wang, Dagmar H. Leary, Jinny Liu, Robert E. Settlage, Kenan P. Fears, Stella H. North, Anahita Mostaghim, Tara Essock-Burns, Sarah E. Haynes, Kathryn J. Wahl and Christopher M. Spillmann
    Citation: BMC Genomics 2015 16:859
  2. Brassica napus is an important oilseed crop. Dissection of the genetic architecture underlying oil-related biological processes will greatly facilitates the genetic improvement of rape...

    Authors: Hai-Ming Xu, Xiang-Dong Kong, Fei Chen, Ji-Xiang Huang, Xiang-Yang Lou and Jian-Yi Zhao
    Citation: BMC Genomics 2015 16:858
  3. Whole genome sequencing has revolutionised the interrogation of mycobacterial genomes. Recent studies have reported conflicting findings on the genomic stability of Mycobacterium tuberculosis during the evolution...

    Authors: PA Black, M. de Vos, GE Louw, RG van der Merwe, A. Dippenaar, EM Streicher, AM Abdallah, SL Sampson, TC Victor, T. Dolby, JA Simpson, PD van Helden, RM Warren and A. Pain
    Citation: BMC Genomics 2015 16:857
  4. Pisciricketssia salmonis is the causal agent of Salmon Rickettsial Syndrome (SRS), which affects salmon species and causes severe economic losses. Selective breeding for disease resist...

    Authors: Katharina Correa, Jean P. Lhorente, María E. López, Liane Bassini, Sudhir Naswa, Nader Deeb, Alex Di Genova, Alejandro Maass, William S. Davidson and José M. Yáñez
    Citation: BMC Genomics 2015 16:854
  5. Campylobacter jejuni is a major zoonotic pathogen, causing gastroenteritis in humans. Invasion is an important pathogenesis trait by which C. jejuni causes disease. Here we report the ...

    Authors: Abiyad Baig, Alan McNally, Steven Dunn, Konrad H. Paszkiewicz, Jukka Corander and Georgina Manning
    Citation: BMC Genomics 2015 16:852
  6. DNA cytosine methylation is an important epigenetic modification that has significant effects on a variety of biological processes in animals. Avian species hold a crucial position in evolutionary history. In ...

    Authors: Jinxiu Li, Rujiao Li, Ying Wang, Xiaoxiang Hu, Yiqiang Zhao, Li Li, Chungang Feng, Xiaorong Gu, Fang Liang, Susan J. Lamont, Songnian Hu, Huaijun Zhou and Ning Li
    Citation: BMC Genomics 2015 16:851
  7. Fusarium crown rot (FCR) is a major cereal disease in semi-arid areas worldwide. Of the various QTL reported, the one on chromosome arm 3BL (Qcrs.cpi-3B) has the largest effect that can be consistently detected i...

    Authors: Zhi Zheng, Jian Ma, Jiri Stiller, Qiang Zhao, Qi Feng, Frédéric Choulet, Catherine Feuillet, You-Liang Zheng, Yuming Wei, Bin Han, Guijun Yan, John M. Manners and Chunji Liu
    Citation: BMC Genomics 2015 16:850
  8. Research efforts for the management of cancer, in particular for lung cancer, are directed to identify new strategies for its early detection. MicroRNAs (miRNAs) are a new promising class of circulating biomar...

    Authors: Davide Conte, Carla Verri, Cristina Borzi, Paola Suatoni, Ugo Pastorino, Gabriella Sozzi and Orazio Fortunato
    Citation: BMC Genomics 2015 16:849
  9. Copy number variation (CNV) is a common feature of eukaryotic genomes, and a growing body of evidence suggests that genes affected by CNV are enriched in processes that are associated with environmental respon...

    Authors: James Boocock, David Chagné, Tony R. Merriman and Michael A. Black
    Citation: BMC Genomics 2015 16:848
  10. The phlebotomine sand fly Phlebotomus perniciosus (Diptera: Psychodidae, Phlebotominae) is a major Old World vector of the protozoan Leishmania infantum, the etiological agent of visceral and cutaneous leishmania...

    Authors: V. Petrella, S. Aceto, F. Musacchia, V. Colonna, M. Robinson, V. Benes, G. Cicotti, G. Bongiorno, L. Gradoni, P. Volf and M. Salvemini
    Citation: BMC Genomics 2015 16:847
  11. CRISPR genome-editing technology makes it possible to quickly and cheaply delete non-protein-coding regulatory elements. We present a vector system adapted for this purpose called DECKO (Double Excision CRISPR...

    Authors: Estel Aparicio-Prat, Carme Arnan, Ilaria Sala, Núria Bosch, Roderic Guigó and Rory Johnson
    Citation: BMC Genomics 2015 16:846

    The Erratum to this article has been published in BMC Genomics 2016 17:215

  12. Bursaphelenchus xylophilus is an emerging pathogenic nematode that is responsible for a devastating epidemic of pine wilt disease across Asia and Europe. In this study, we report the f...

    Authors: Juan E. Palomares-Rius, Isheng J. Tsai, Nurul Karim, Mitsuteru Akiba, Tetsuro Kato, Haruhiko Maruyama, Yuko Takeuchi and Taisei Kikuchi
    Citation: BMC Genomics 2015 16:845
  13. 5-Enolpyruvylshikimate-3-phosphate synthase (EPSPS) is the sixth and penultimate enzyme in the shikimate biosynthesis pathway, and is the target of the herbicide glyphosate.  The EPSPS genes of allohexaploid whea...

    Authors: Attawan Aramrak, Kimberlee K. Kidwell, Camille M. Steber and Ian C. Burke
    Citation: BMC Genomics 2015 16:844
  14. Copy number variation (CNV) is a major source of genome polymorphism that directly contributes to phenotypic variation such as resistance to infectious diseases. Lines 63 and 72 are two highly inbred experimental...

    Authors: Yiyuan Yan, Ning Yang, Hans H. Cheng, Jiuzhou Song and Lujiang Qu
    Citation: BMC Genomics 2015 16:843
  15. The relative abundance of five dominant fatty acids (FAs) (palmitic, stearic, oleic, linoleic and linolenic acids) is a major factor determining seed quality in soybean.

    Authors: Ying-hui Li, Jochen C. Reif, Yan-song Ma, Hui-long Hong, Zhang-xiong Liu, Ru-zhen Chang and Li-juan Qiu
    Citation: BMC Genomics 2015 16:841
  16. The Myxozoa, a group of oligocellular, obligate endoparasites, has long been poorly understood in an evolutionary context. Recent genome-level sequencing techniques such as RNA-seq have generated large amounts...

    Authors: Jonathan Foox, Maurice Ringuette, Sherwin S. Desser and Mark E. Siddall
    Citation: BMC Genomics 2015 16:840
  17. Methane represents 16 % of total anthropogenic greenhouse gas emissions. It has been estimated that ruminant livestock produce ca. 29 % of this methane. As individual animals produce consistently different qua...

    Authors: R. John Wallace, John A. Rooke, Nest McKain, Carol-Anne Duthie, Jimmy J. Hyslop, David W. Ross, Anthony Waterhouse, Mick Watson and Rainer Roehe
    Citation: BMC Genomics 2015 16:839
  18. Leaf color variations are common in plants. Herein we describe a natural mutant of barley cultivar Edamai No.6, whs18, whose leaf color showed stable and inheritable stage-green-revertible-albino under field cond...

    Authors: Dandan Qin, Jing Dong, Fuchao Xu, Ganggang Guo, Shuangtao Ge, Qing Xu, Yuxin Xu and Meifang Li
    Citation: BMC Genomics 2015 16:838
  19. Bats are able to employ an astonishingly complex vocal repertoire for navigating their environment and conveying social information. A handful of species also show evidence for vocal learning, an extremely rar...

    Authors: Pedro Rodenas-Cuadrado, Xiaowei Sylvia Chen, Lutz Wiegrebe, Uwe Firzlaff and Sonja C. Vernes
    Citation: BMC Genomics 2015 16:836
  20. MicroRNAs (miRNAs) are small, non-coding RNAs that are important regulators of gene expression, and play major roles in plant development and their response to the environment. Root extracts from Panax notoginsen...

    Authors: Rongchang Wei, Deyou Qiu, Iain W. Wilson, Huan Zhao, Shanfa Lu, Jianhua Miao, Shixin Feng, Longhua Bai, Qinghua Wu, Dongping Tu, Xiaojun Ma and Qi Tang
    Citation: BMC Genomics 2015 16:835
  21. The populations of the Arabian Peninsula remain the least represented in public genetic databases, both in terms of single nucleotide variants and of larger genomic mutations. We present the first high-resolut...

    Authors: Khalid A. Fakhro, Noha A. Yousri, Juan L. Rodriguez-Flores, Amal Robay, Michelle R. Staudt, Francisco Agosto-Perez, Jacqueline Salit, Joel A. Malek, Karsten Suhre, Amin Jayyousi, Mahmoud Zirie, Dora Stadler, Jason G. Mezey and Ronald G. Crystal
    Citation: BMC Genomics 2015 16:834
  22. Two-component systems (TCS) play critical roles in sensing and responding to environmental cues. Azospirillum is a plant growth-promoting rhizobacterium living in the rhizosphere of many important crops. Despite ...

    Authors: Stéphanie Borland, Anne Oudart, Claire Prigent-Combaret, Céline Brochier-Armanet and Florence Wisniewski-Dyé
    Citation: BMC Genomics 2015 16:833
  23. Bifidobacterial genome analysis has provided insights as to how these gut commensals adapt to and persist in the human GIT, while also revealing genetic diversity among members of a given bifidobacterial (sub)...

    Authors: A. O’Callaghan, F. Bottacini, M. O’Connell Motherway and D. van Sinderen
    Citation: BMC Genomics 2015 16:832
  24. The Coronator Group currently encompasses six morphologically similar species (Culex camposi Dyar, Culex coronator Dyar and Knab, Culex covagarciai Forattini, Culex usquatus Dyar, Culex usquatissimus Dyar, and Cu...

    Authors: Bruna Demari-Silva, Peter G. Foster, Tatiane M. P. de Oliveira, Eduardo S. Bergo, Sabri S. Sanabani, Rodrigo Pessôa and Maria Anice M. Sallum
    Citation: BMC Genomics 2015 16:831
  25. Control of malaria is threatened by emerging parasite resistance to artemisinin and derivative drug (ART) therapies. The molecular detail of how Plasmodium malaria parasites respond to ART and how this could cont...

    Authors: Philip J. Shaw, Sastra Chaotheing, Pavita Kaewprommal, Jittima Piriyapongsa, Chayaphat Wongsombat, Nattida Suwannakitti, Pongpisid Koonyosying, Chairat Uthaipibull, Yongyuth Yuthavong and Sumalee Kamchonwongpaisan
    Citation: BMC Genomics 2015 16:830
  26. Papillary Thyroid Cancer (PTC) is the most prevalent type of endocrine cancer. Its incidence has rapidly increased in recent decades but little is known regarding its complete microRNA transcriptome (miRNome)....

    Authors: Manuel Saiselet, David Gacquer, Alex Spinette, Ligia Craciun, Myriam Decaussin-Petrucci, Guy Andry, Vincent Detours and Carine Maenhaut
    Citation: BMC Genomics 2015 16:828
  27. Yeasts show remarkable variation in the organization of their mitochondrial genomes, yet there is little experimental data on organellar gene expression outside few model species. Candida albicans is interesting ...

    Authors: Adam Kolondra, Karolina Labedzka-Dmoch, Joanna M. Wenda, Katarzyna Drzewicka and Pawel Golik
    Citation: BMC Genomics 2015 16:827
  28. The variability in gene organization and architecture of green algal mitochondrial genomes is only recently being studied on a finer taxonomic scale. Sequenced mt genomes from the chlorophycean orders Volvocal...

    Authors: Audrey A. Farwagi, Karolina Fučíková and Hilary A. McManus
    Citation: BMC Genomics 2015 16:826
  29. The New Zealand glowworm is the larva of a carnivorous fungus gnat that produces bioluminescence to attract prey. The bioluminescent system of the glowworm is evolutionarily distinct from other well-characteri...

    Authors: Miriam L. Sharpe, Peter K. Dearden, Gregory Gimenez and Kurt L. Krause
    Citation: BMC Genomics 2015 16:825
  30. The technical progress in the last decade has made it possible to sequence millions of DNA reads in a relatively short time frame. Several variant callers based on different algorithms have emerged and have ma...

    Authors: Guiyan Ni, Tim M. Strom, Hubert Pausch, Christian Reimer, Rudolf Preisinger, Henner Simianer and Malena Erbe
    Citation: BMC Genomics 2015 16:824
  31. Superoxide dismutase (SOD) is an essential enzyme of the plant antioxidant system that responds to oxidative stresses caused by adverse conditions. Banana is an important staple and economic crop in tropical a...

    Authors: Xin Feng, Zhongxiong Lai, Yuling Lin, Gongti Lai and Conglong Lian
    Citation: BMC Genomics 2015 16:823
  32. The transcription factor farnesoid X receptor (FXR) governs bile acid and energy homeostasis, is involved in inflammation, and has protective functions in the liver. In the present study we investigated the ef...

    Authors: Ewa Szalowska, Tessa E. Pronk and Ad ACM Peijnenburg
    Citation: BMC Genomics 2015 16:822
  33. In small mammals brown adipose tissue (BAT) plays a predominant role in regulating energy expenditure (EE) via adaptive thermogenesis. New-born babies require BAT to control their body temperature, however its...

    Authors: Isabelle Güller, Sarah McNaughton, Tamsyn Crowley, Vicente Gilsanz, Shingo Kajimura, Matthew Watt and Aaron P. Russell
    Citation: BMC Genomics 2015 16:820
  34. Insects subsisting on nutritionally unbalanced diets have evolved long-term mutualistic relationships with intracellular symbiotic bacteria (endosymbionts). The endosymbiont population load undergoes changes a...

    Authors: Florent Masson, Yves Moné, Aurélien Vigneron, Agnès Vallier, Nicolas Parisot, Carole Vincent-Monégat, Séverine Balmand, Marie-Christine Carpentier, Anna Zaidman-Rémy and Abdelaziz Heddi
    Citation: BMC Genomics 2015 16:819
  35. The entire world is facing a deteriorating environment. Understanding the mechanisms underlying plant responses to external abiotic stresses is important for breeding stress-tolerant crops and herbages. Phytoh...

    Authors: Zhenyan Miao, Wei Xu, Daofeng Li, Xiaona Hu, Jiaxing Liu, Rongxue Zhang, Zongyong Tong, Jiangli Dong, Zhen Su, Liwei Zhang, Min Sun, Wenjie Li, Zhenglin Du, Songnian Hu and Tao Wang
    Citation: BMC Genomics 2015 16:818
  36. Marek’s disease (MD) is a lymphoproliferative disease of poultry induced by Marek’s disease virus (MDV), a highly oncogenic alphaherpesvirus. Identifying the underlying genes conferring MD genetic resistance i...

    Authors: Hans H. Cheng, Sudeep Perumbakkam, Alexis Black Pyrkosz, John R. Dunn, Andres Legarra and William M. Muir
    Citation: BMC Genomics 2015 16:816
  37. Long non-coding RNAs (lncRNAs) are a new class of regulatory molecules with roles in diverse biological processes. While much effort has been invested in the analysis of lncRNAs from established plant models Arab...

    Authors: Chunying Kang and Zhongchi Liu
    Citation: BMC Genomics 2015 16:815
  38. Recent advances in the analysis of high-throughput expression data have led to the development of tools that scaled-up their focus from single-gene to gene set level. For example, the popular Gene Set Enrichme...

    Authors: Lionel Spinelli, Sabrina Carpentier, Frédéric Montañana Sanchis, Marc Dalod and Thien-Phong Vu Manh
    Citation: BMC Genomics 2015 16:814
  39. Variation in environment, management practices, nutrition or selection objectives has led to a variety of different choices being made in the use of genetic material between countries. Differences in genome-le...

    Authors: Jeremy T. Howard, Mekonnen Haile-Mariam, Jennie E. Pryce and Christian Maltecca
    Citation: BMC Genomics 2015 16:813
  40. The transgenic rodent mutation reporter assay provides an efficient approach to identify mutagenic agents in vivo. A major advantage of this assay is that mutant reporter transgenes can be sequenced to provide in...

    Authors: Marc A. Beal, Rémi Gagné, Andrew Williams, Francesco Marchetti and Carole L. Yauk
    Citation: BMC Genomics 2015 16:812
  41. The regulation of endometrial inflammation has important consequences for the resumption of bovine fertility postpartum. All cows experience bacterial influx into the uterus after calving; however a significan...

    Authors: Cathriona Foley, Aspinas Chapwanya, John J. Callanan, Ronan Whiston, Raúl Miranda-CasoLuengo, Junnan Lu, Wim G. Meijer, David J. Lynn, Cliona O’ Farrelly and Kieran G. Meade
    Citation: BMC Genomics 2015 16:811

    The Erratum to this article has been published in BMC Genomics 2015 16:1050

  42. The major histocompatibility complex (MHC) is a chromosomal region that regulates immune responsiveness in vertebrates. This region is one of the most important for disease resistance because it has been assoc...

    Authors: N. Siva Subramaniam, EF Morgan, JD Wetherall, MJ Stear and DM Groth
    Citation: BMC Genomics 2015 16:810
  43. The reconstruction of context-specific metabolic models from easily and reliably measurable features such as transcriptomics data will be increasingly important in research and medicine. Current reconstruction...

    Authors: Maria Pires Pacheco, Elisabeth John, Tony Kaoma, Merja Heinäniemi, Nathalie Nicot, Laurent Vallar, Jean-Luc Bueb, Lasse Sinkkonen and Thomas Sauter
    Citation: BMC Genomics 2015 16:809
  44. Originating from Northeast Asia, the Pacific oyster Crassostrea gigas has been introduced into a large number of countries for aquaculture purpose. Following introduction, the Pacific oyster has turned into an in...

    Authors: Rossana Sussarellu, Arnaud Huvet, Sylvie Lapègue, Virgile Quillen, Christophe Lelong, Florence Cornette, Lasse Fast Jensen, Nicolas Bierne and Pierre Boudry
    Citation: BMC Genomics 2015 16:808

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