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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Marek’s disease (MD) is a lymphoproliferative disease of poultry induced by Marek’s disease virus (MDV), a highly oncogenic alphaherpesvirus. Identifying the underlying genes conferring MD genetic resistance i...

    Authors: Hans H. Cheng, Sudeep Perumbakkam, Alexis Black Pyrkosz, John R. Dunn, Andres Legarra and William M. Muir
    Citation: BMC Genomics 2015 16:816
    Content type: Research article Published on:

  2. Triple negative breast cancer (TNBC) is a malignancy with very poor prognosis, due to its aggressive clinical characteristics and lack of response to receptor-targeted drug therapy. In TNBC, immune-related pat...

    Authors: Fernando J. Velloso, Alexandre R. Campos, Mari C. Sogayar and Ricardo G. Correa
    Citation: BMC Genomics 2019 20:152
    Content type: Research article Published on:

  3. Infectious Salmonid Anaemia Virus (ISAV) causes a notifiable disease that poses a large threat for Atlantic salmon (Salmo salar) aquaculture worldwide. There is no fully effective treatment or vaccine, and theref...

    Authors: O. Gervais, A. Barria, A. Papadopoulou, R. L. Gratacap, B. Hillestad, A. E. Tinch, S. A. M. Martin, D. Robledo and R. D. Houston
    Citation: BMC Genomics 2021 22:345
    Content type: Research Published on:

  4. Wheat stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is one of the most destructive diseases of wheat worldwide. To establish compatibility with the host, Pst forms special infection structures...

    Authors: Jinbiao Ma, Xueling Huang, Xiaojie Wang, Xianming Chen, Zhipeng Qu, Lili Huang and Zhensheng Kang
    Citation: BMC Genomics 2009 10:586
    Content type: Research article Published on:

  5. Human blood platelets are essential to maintaining normal hemostasis, and platelet dysfunction often causes bleeding or thrombosis. Estimates of genome-wide platelet RNA expression using microarrays have provi...

    Authors: Paul F Bray, Steven E McKenzie, Leonard C Edelstein, Srikanth Nagalla, Kathleen Delgrosso, Adam Ertel, Joan Kupper, Yi Jing, Eric Londin, Phillipe Loher, Huang-Wen Chen, Paolo Fortina and Isidore Rigoutsos
    Citation: BMC Genomics 2013 14:1
    Content type: Research article Published on:

  6. The third, or wobble, position in a codon provides a high degree of possible degeneracy and is an elegant fault-tolerance mechanism. Nucleotide biases between organisms at the wobble position have been documen...

    Authors: Tatiana V Tatarinova, Nickolai N Alexandrov, John B Bouck and Kenneth A Feldmann
    Citation: BMC Genomics 2010 11:308
    Content type: Research article Published on:

  7. Saprophytic filamentous fungi are ubiquitous micro-organisms that play an essential role in photosynthetic carbon recycling. The wood-decayer Pycnoporus cinnabarinus is a model fungus for the study of plant cell ...

    Authors: Anthony Levasseur, Anne Lomascolo, Olivier Chabrol, Francisco J Ruiz-Dueñas, Eva Boukhris-Uzan, François Piumi, Ursula Kües, Arthur F J Ram, Claude Murat, Mireille Haon, Isabelle Benoit, Yonathan Arfi, Didier Chevret, Elodie Drula, Min Jin Kwon, Philippe Gouret…
    Citation: BMC Genomics 2014 15:486
    Content type: Research article Published on:

  8. Pyrethroid resistance in the major malaria vector Anopheles funestus is rapidly expanding across Southern Africa. It remains unknown whether this resistance has a unique origin with the same molecular basis or is...

    Authors: Jacob M Riveron, Sulaiman S Ibrahim, Emmanuel Chanda, Themba Mzilahowa, Nelson Cuamba, Helen Irving, Kayla G Barnes, Miranda Ndula and Charles S Wondji
    Citation: BMC Genomics 2014 15:817
    Content type: Research article Published on:

  9. Long terminal repeat (LTR)-retrotransposons (LTR-RTs) are ubiquitous and make up the majority of nearly all sequenced plant genomes, whereas their pivotal roles in genome evolution, gene expression regulation ...

    Authors: Long-Long Yang, Xin-Yu Zhang, Li-Ying Wang, Yan-Ge Li, Xiao-Ting Li, Yi Yang, Qing Su, Ning Chen, Yu-Lan Zhang, Ning Li, Chuan-Liang Deng, Shu-Fen Li and Wu-Jun Gao
    Citation: BMC Genomics 2023 24:423
    Content type: Research Published on:

  10. Elevated water temperature, as is expected through climate change, leads to masculinization in fish species with sexual plasticity, resulting in changes in population dynamics. These changes are one important ...

    Authors: Shahrbanou Hosseini, Ngoc-Thuy Ha, Henner Simianer, Clemens Falker-Gieske, Bertram Brenig, Andre Franke, Gabriele Hörstgen-Schwark, Jens Tetens, Sebastian Herzog and Ahmad Reza Sharifi
    Citation: BMC Genomics 2019 20:341
    Content type: Research article Published on:

  11. Reactive oxygen species (ROS) play a prominent role in signal transduction and cellular homeostasis in plants. However, imbalances between generation and elimination of ROS can give rise to oxidative stress in...

    Authors: Bhupendra Chaudhary, Ran Hovav, Lex Flagel, Ron Mittler and Jonathan F Wendel
    Citation: BMC Genomics 2009 10:378
    Content type: Research article Published on:

  12. Plant non-specific lipid transfer proteins (nsLTPs) are small, basic proteins that are abundant in higher plants. They have been reported to play an important role in various plant physiological processes, suc...

    Authors: Guojun Li, Menglu Hou, Yaxue Liu, Yue Pei, Minghui Ye, Yao Zhou, Chenxi Huang, Yaqi Zhao and Haoli Ma
    Citation: BMC Genomics 2019 20:375
    Content type: Research article Published on:

  13. Many species of stalk-eyed flies (Diopsidae) possess highly-exaggerated, sexually dimorphic eye-stalks that play an important role in the mating system of these flies. Eye-stalks are increasingly being used as...

    Authors: Richard H Baker, Jenna Morgan, Xianhui Wang, Jeffrey L Boore and Gerald S Wilkinson
    Citation: BMC Genomics 2009 10:361
    Content type: Research article Published on:

  14. Flavonoids are produced in all flowering plants in a wide range of tissues including in berry fruits. These compounds are of considerable interest for their biological activities, health benefits and potential...

    Authors: Vera Thole, Jean-Etienne Bassard, Ricardo Ramírez-González, Martin Trick, Bijan Ghasemi Afshar, Dario Breitel, Lionel Hill, Alexandre Foito, Louise Shepherd, Sabine Freitag, Cláudia Nunes dos Santos, Regina Menezes, Pilar Bañados, Michael Naesby, Liangsheng Wang, Artem Sorokin…
    Citation: BMC Genomics 2019 20:995
    Content type: Research article Published on:

  15. Itraconazole is currently used to treat paracoccidioidomycosis. The mechanism of action of azoles has been elucidated in some fungi, although little is known regarding its mechanism of action in Paracoccidioides ...

    Authors: Benedito Rodrigues da Silva Neto, Patrícia Fernanda Zambuzzi Carvalho, Alexandre Melo Bailão, Wellington Santos Martins, Célia Maria de Almeida Soares and Maristela Pereira
    Citation: BMC Genomics 2014 15:254
    Content type: Research article Published on:

  16. The hard clam, Mercenaria mercenaria, has been affected by severe mortality episodes associated with the protistan parasite QPX (Quahog Parasite Unknown) for several years. Despite the commercial importance of ha...

    Authors: Mickael Perrigault, Arnaud Tanguy and Bassem Allam
    Citation: BMC Genomics 2009 10:377
    Content type: Research article Published on:

  17. Increasing evidence shows that whole genomes of eukaryotes are almost entirely transcribed into both protein coding genes and an enormous number of non-protein-coding RNAs (ncRNAs). Therefore, revealing the un...

    Authors: Lin Wan, Dayong Li, Donglei Zhang, Xue Liu, Wenjiang J Fu, Lihuang Zhu, Minghua Deng, Fengzhu Sun and Minping Qian
    Citation: BMC Genomics 2008 9:623
    Content type: Research article Published on:

  18. Myoblasts play an important role in muscle growth and repair, but the high glucose environment severely affects their function. The purpose of this study is to explore the potential molecular mechanism of lira...

    Authors: Dongmei Fan, Yunjie Zhang, Lanyu Lu, Fuzai Yin and Bowei Liu
    Citation: BMC Genomics 2024 25:159
    Content type: Research Published on:

  19. Staphylococcus aureus (S. aureus), is responsible for many infectious diseases, ranging from benign skin infections to life-threatening endocarditis and toxic shock syndrome. Ortho-phenylphenol (OPP) is an antimi...

    Authors: Hyeung-Jin Jang, Chantal Nde, Freshteh Toghrol and William E Bentley
    Citation: BMC Genomics 2008 9:411
    Content type: Research article Published on:

  20. Peanut embryo development is a complex process involving a series of gene regulatory pathways and is easily affected by various elements in the soil. Calcium deficiency in the soil induces early embryo abortio...

    Authors: Hua Chen, Qiang Yang, Kun Chen, Shanshan Zhao, Chong Zhang, Ronglong Pan, Tiecheng Cai, Ye Deng, Xingjun Wang, Yuting Chen, Wenting Chu, Wenping Xie and Weijian Zhuang
    Citation: BMC Genomics 2019 20:392
    Content type: Research article Published on:

  21. A sense-antisense gene pair (SAGP) is a gene pair where two oppositely transcribed genes share a common nucleotide sequence region. In eukaryotic genomes, SAGPs can be organized in complex sense-antisense arch...

    Authors: Oleg V Grinchuk, Efthimios Motakis and Vladimir A Kuznetsov
    Citation: BMC Genomics 2010 11(Suppl 1):S9
    Content type: Research Published on:

    This article is part of a Supplement: Volume 11 Supplement 1

  22. Intracranial pediatric germ cell tumors (GCTs) are rare and heterogeneous neoplasms and vary in histological differentiation, prognosis and clinical behavior. Germinoma and mature teratoma are GCTs that have a...

    Authors: Hsei-Wei Wang, Yu-Hsuan Wu, Jui-Yu Hsieh, Muh-Lii Liang, Meng-En Chao, Da-Jung Liu, Ming-Ta Hsu and Tai-Tong Wong
    Citation: BMC Genomics 2010 11:132
    Content type: Research article Published on:

  23. The pattern-forming bacterium Paenibacillus vortex is notable for its advanced social behavior, which is reflected in development of colonies with highly intricate architectures. Prior to this study, only two oth...

    Authors: Alexandra Sirota-Madi, Tsviya Olender, Yael Helman, Colin Ingham, Ina Brainis, Dalit Roth, Efrat Hagi, Leonid Brodsky, Dena Leshkowitz, Vladimir Galatenko, Vladimir Nikolaev, Raja C Mugasimangalam, Sharron Bransburg-Zabary, David L Gutnick, Doron Lancet and Eshel Ben-Jacob
    Citation: BMC Genomics 2010 11:710
    Content type: Research article Published on:

  24. The electrosensory ampullary organs (AOs) and mechanosensory neuromasts (NMs) found in sturgeon and some other non-neopterygian fish or amphibians are both originated from lateral line placodes. However, these...

    Authors: Jian Wang, Chengcheng Lu, Yifan Zhao, Zhijiao Tang, Jiakun Song and Chunxin Fan
    Citation: BMC Genomics 2020 21:875
    Content type: Research article Published on:

  25. The FANTOM5 consortium used Cap Analysis of Gene Expression (CAGE) tag sequencing to produce a comprehensive atlas of promoters and enhancers within the human and mouse genomes. We reasoned that the mapping of...

    Authors: Christelle Robert, Ronan Kapetanovic, Dario Beraldi, Mick Watson, Alan L. Archibald and David A. Hume
    Citation: BMC Genomics 2015 16:970
    Content type: Research article Published on:

  26. The fucoid brown algae (Heterokontophyta, Phaeophyceae) are increasingly the focus of ecological genetics, biodiversity, biogeography and speciation research. The molecular genetics underlying mating system va...

    Authors: Maria João F Martins, Catarina F Mota and Gareth A Pearson
    Citation: BMC Genomics 2013 14:294
    Content type: Research article Published on:

  27. The expression and biological functions of circular RNAs (circRNAs) in reproductive organs have been extensively reported. However, it is still unclear whether circRNAs are involved in sex change. To this end,...

    Authors: Zhi He, Zhijun Ma, Deying Yang, Qiqi Chen, Zhide He, Jiaxiang Hu, Faqiang Deng, Qian Zhang, Jiayang He, Lijuan Ye, Hongjun Chen, Liang He, Xiaoli Huang, Wei Luo, Shiyong Yang, Xiaobin Gu…
    Citation: BMC Genomics 2022 23:552
    Content type: Research Published on:

  28. Surgical resection remains a critical treatment option for many patients with primary and secondary hepatic neoplasms. Extended hepatectomy (eHx) may be required for some patients with large tumors, which may ...

    Authors: Zeyuan Li, Bo Peng, Shilian Chen, Jiaping Li, Kai Hu, Lijuan Liao, Qiuli Xie, Mei Yao, Lixing Liang, Stephen Tomlinson, Guandou Yuan and Songqing He
    Citation: BMC Genomics 2023 24:532
    Content type: Research Published on:

  29. Teleost fish have evolved various adaptations that allow them to tolerate cold water conditions. However, the underlying mechanism of this adaptation is poorly understood in Tibetan Plateau fish. RNA-seq combi...

    Authors: Sijia Liu, Fei Tian, Delin Qi, Hongfang Qi, Yang Wang, Shixiao Xu and Kai Zhao
    Citation: BMC Genomics 2023 24:545
    Content type: Research Published on:

  30. Human Endogenous Retroviruses (HERVs) and Mammalian apparent LTR-retrotransposons (MaLRs) represent the 8% of our genome and are distributed among our 46 chromosomes. These LTR-retrotransposons are thought to ...

    Authors: Marine Mommert, Olivier Tabone, Guy Oriol, Elisabeth Cerrato, Audrey Guichard, Magali Naville, Paola Fournier, Jean-Nicolas Volff, Alexandre Pachot, Guillaume Monneret, Fabienne Venet, Karen Brengel-Pesce, Julien Textoris and François Mallet
    Citation: BMC Genomics 2018 19:522
    Content type: Research article Published on:

  31. The parasitic flowering plant dwarf mistletoe (Arceuthobium spp., Viscaceae) is one of the most destructive forest pests, posing a major threat to numerous conifer species worldwide. Arceuthobium sichuanense (spr...

    Authors: Yonglin Wang, Xuewu Li, Weifen Zhou, Tao Li and Chengming Tian
    Citation: BMC Genomics 2016 17:771
    Content type: Research article Published on:

  33. The malaria parasites in the genus Plasmodium have a very complicated life cycle involving an invertebrate vector and a vertebrate host. RNA-binding proteins (RBPs) are critical factors involved in every aspect o...

    Authors: BP Niranjan Reddy, Sony Shrestha, Kevin J. Hart, Xiaoying Liang, Karen Kemirembe, Liwang Cui and Scott E. Lindner
    Citation: BMC Genomics 2015 16:890
    Content type: Research article Published on:

  34. Transcriptomic analyses were performed to compare the molecular responses of two potato varieties previously shown to differ in the severity of disease symptoms due to infection by “Candidatus Liberibacter solana...

    Authors: Julien G. Levy, Azucena Mendoza, J. Creighton Miller Jr., Cecilia Tamborindeguy and Elizabeth A. Pierson
    Citation: BMC Genomics 2017 18:960
    Content type: Research article Published on:

  35. Acetic acid is mostly known as a toxic by-product of alcoholic fermentation carried out by Saccharomyces cerevisiae, which it frequently impairs. The more recent finding that acetic acid triggers apoptotic progra...

    Authors: Marlene Sousa, Ana Marta Duarte, Tânia R Fernandes, Susana R Chaves, Andreia Pacheco, Cecília Leão, Manuela Côrte-Real and Maria João Sousa
    Citation: BMC Genomics 2013 14:838
    Content type: Research article Published on:

  36. The growing importance of the ubiquitous fungal genus Trichoderma (Hypocreales, Ascomycota) requires understanding of its biology and evolution. Many Trichoderma species are used as biofertilizers and biofungicid...

    Authors: Christian P. Kubicek, Andrei S. Steindorff, Komal Chenthamara, Gelsomina Manganiello, Bernard Henrissat, Jian Zhang, Feng Cai, Alexey G. Kopchinskiy, Eva M. Kubicek, Alan Kuo, Riccardo Baroncelli, Sabrina Sarrocco, Eliane Ferreira Noronha, Giovanni Vannacci, Qirong Shen, Igor V. Grigoriev…
    Citation: BMC Genomics 2019 20:485
    Content type: Research article Published on:

  37. Secondary endosymbionts of aphids provide benefits to their hosts, but also impose costs such as reduced lifespan and reproductive output. The aphid Aphis fabae is host to different strains of the secondary endos...

    Authors: Heidi Kaech, Alice B. Dennis and Christoph Vorburger
    Citation: BMC Genomics 2021 22:449
    Content type: Research Published on:

  38. Recently, RNA sequencing (RNA-seq) has rapidly emerged as a major transcriptome profiling system. Elucidation of the bovine mammary gland transcriptome by RNA-seq is essential for identifying candidate genes t...

    Authors: Xiaogang Cui, Yali Hou, Shaohua Yang, Yan Xie, Shengli Zhang, Yuan Zhang, Qin Zhang, Xuemei Lu, George E Liu and Dongxiao Sun
    Citation: BMC Genomics 2014 15:226
    Content type: Research article Published on:

  39. In many insect species, the larvae/nymphs are unable to disperse far from the oviposition site selected by adults. The Sakhalin pine sawyer Monochamus saltuarius (Gebler) is the newly discovered insect vector of ...

    Authors: Zehai Hou, Fengming Shi, Sixun Ge, Jing Tao, Lili Ren, Hao Wu and Shixiang Zong
    Citation: BMC Genomics 2021 22:189
    Content type: Research article Published on:

  40. Vesicular stomatitis virus (VSV) is a typical non-segmented negative-sense RNA virus of the genus Vesiculovirus in the family Rhabdoviridae. VSV can infect a wide range of animals, including humans, with oral bli...

    Authors: Wuweiyi Han, Xiaojuan Fei, Fan Yang, Xintong Sun, Jianshe Yang, Jinxin Qiu, Luhua Zhang, Wenhui Zhang, Guohua Chen, Wei Han, Xiaobo He, Yongsheng Liu and Weike Li
    Citation: BMC Genomics 2024 25:62
    Content type: Research Published on:

  41. The reduced folate carrier (RFC1) is an integral membrane protein and facilitative anion exchanger that mediates delivery of 5-methyltetrahydrofolate into mammalian cells. Adequate maternal-fetal transport of fol...

    Authors: Janee Gelineau-van Waes, Joyce R Maddox, Lynette M Smith, Michael van Waes, Justin Wilberding, James D Eudy, Linda K Bauer and Richard H Finnell
    Citation: BMC Genomics 2008 9:156
    Content type: Research article Published on:

  42. The marine cyanobacterium Prochlorococcus marinus, having multiple ecotypes of distinct genotypic/phenotypic traits and being the first documented example of genome shrinkage in free-living organisms, offers an i...

    Authors: Sandip Paul, Anirban Dutta, Sumit K Bag, Sabyasachi Das and Chitra Dutta
    Citation: BMC Genomics 2010 11:103
    Content type: Research article Published on:

  43. Atherosclerosis is a progressive disease characterized by inflammation and accumulation of lipids in vascular tissue. Porphyromonas gingivalis (Pg) and Chlamydia pneumoniae (Cp) are associated with inflammatory a...

    Authors: Carolyn D Kramer, Ellen O Weinberg, Adam C Gower, Xianbao He, Samrawit Mekasha, Connie Slocum, Lea M Beaulieu, Lee Wetzler, Yuriy Alekseyev, Frank C Gibson III, Jane E Freedman, Robin R Ingalls and Caroline A Genco
    Citation: BMC Genomics 2014 15:1176
    Content type: Research article Published on:

  44. The rapid growth of the world’s population demands an increase in food production that no longer can be reached by increasing amounts of nitrogenous fertilizers. Plant growth promoting bacteria (PGPB) might be...

    Authors: Doumit Camilios-Neto, Paloma Bonato, Roseli Wassem, Michelle Z Tadra-Sfeir, Liziane CC Brusamarello-Santos, Glaucio Valdameri, Lucélia Donatti, Helisson Faoro, Vinicius A Weiss, Leda S Chubatsu, Fábio O Pedrosa and Emanuel M Souza
    Citation: BMC Genomics 2014 15:378
    Content type: Research article Published on:

  45. Hox gene family is an important transcription factor that regulates cell process, and plays a role in the process of adipocytes differentiation and fat deposition. Previous transcriptome sequencing studies hav...

    Authors: Lixia He, Xue Feng, Chunli Hu, Shuang Liu, Hui Sheng, Bei Cai and Yun Ma
    Citation: BMC Genomics 2024 25:358
    Content type: Research Published on:

  47. Frost is a limiting abiotic stress for the winter pea crop (Pisum sativum L.) and identifying the genetic determinants of frost tolerance is a major issue to breed varieties for cold northern areas. Quantitative ...

    Authors: Sana Beji, Véronique Fontaine, Rosemonde Devaux, Martine Thomas, Sandra Silvia Negro, Nasser Bahrman, Mathieu Siol, Grégoire Aubert, Judith Burstin, Jean-Louis Hilbert, Bruno Delbreil and Isabelle Lejeune-Hénaut
    Citation: BMC Genomics 2020 21:536
    Content type: Research article Published on:

  48. Clostridium acetobutylicum has been used to produce butanol in industry. Catabolite control protein A (CcpA), known to mediate carbon catabolite repression (CCR) in low GC gram-positive bacteria, has been identif...

    Authors: Cong Ren, Yang Gu, Yan Wu, Weiwen Zhang, Chen Yang, Sheng Yang and Weihong Jiang
    Citation: BMC Genomics 2012 13:349
    Content type: Research article Published on:

  49. Asarum heterotropides Fr. Schmidt var. mandshuricum (Maxim.) Kitag. is an important medicinal and industrial plant, which is used in the treatment of various diseases. The main bioactive ingredient is the volatil...

    Authors: Zhiqing Wang, Haiqin Ma, Min Zhang, Ziqing Wang, Yixin Tian, Wei Li and Yingping Wang
    Citation: BMC Genomics 2021 22:16
    Content type: Research article Published on:

  50. In recent years, the idea of a highly immunogenic protein-based vaccine to combat Streptococcus pneumoniae and its severe invasive infectious diseases has gained considerable interest. However, the target protein...

    Authors: Gustavo Gámez, Andrés Castro, Alejandro Gómez-Mejia, Mauricio Gallego, Alejandro Bedoya, Mauricio Camargo and Sven Hammerschmidt
    Citation: BMC Genomics 2018 19:10
    Content type: Research article Published on:

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BMC Genomics

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