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  1. Head of fish species, an exquisitely complex anatomical system, is important not only for studying fish evolution and development, but also for economic values. Currently, although some studies have been made ...

    Authors: Weiwei Luo, Junru Wang, Ying Zhou, Meixia Pang, Xiaomu Yu and Jingou Tong
    Citation: BMC Genomics 2022 23:168
    Content type: Research Published on:

  2. Ticks are obligate haematophagous ectoparasites considered second to mosquitos as vectors and reservoirs of multiple pathogens of global concern. Individual variation in tick infestation has been reported in i...

    Authors: Abulgasim M. Ahbara, Médiha Khamassi Khbou, Rihab Rhomdhane, Limam Sassi, Mohamed Gharbi, Aynalem Haile, Mourad Rekik, Barbara Rischkowsky and Joram M. Mwacharo
    Citation: BMC Genomics 2022 23:167
    Content type: Research Published on:

  3. Aeromonas veronii is a Gram-negative rod-shaped motile bacterium that inhabits mainly freshwater environments. A. veronii is a pathogen of aquatic animals, causing diseases in fish. A. veronii is also an emerging...

    Authors: Fang Liu, Christopher Yuwono, Alfred Chin Yen Tay, Michael C. Wehrhahn, Stephen M. Riordan and Li Zhang
    Citation: BMC Genomics 2022 23:166
    Content type: Research Published on:

  4. Several studies have been performed to study transcriptome profiles after dengue virus infections with partly different results. Due to slightly different settings of the individual studies, different genes an...

    Authors: Christine Winter, António A. R. Camarão, Imke Steffen and Klaus Jung
    Citation: BMC Genomics 2022 23:165
    Content type: Research Published on:

  5. The ability of plants to withstand and thrive in an adverse environment is crucial to ensure their survivability and yield performance. The WRKY transcription factors (TFs) have crucial roles in plant growth, ...

    Authors: Fong Chin Lee, Wan Chin Yeap, David Ross Appleton, Chai-Ling Ho and Harikrishna Kulaveerasingam
    Citation: BMC Genomics 2022 23:164
    Content type: Research Published on:

  6. Technological advancements in the era of massive parallel sequencing have enabled the functional dissection of the human transcriptome. However, 5′ ends of mRNAs are significantly underrepresented in these dat...

    Authors: Panagiotis G. Adamopoulos, Panagiotis Tsiakanikas, Irene Stolidi and Andreas Scorilas
    Citation: BMC Genomics 2022 23:163
    Content type: Research Published on:

  7. Blunt snout bream (Megalobrama amblycephala) is sensitive to hypoxia. A new blunt snout bream strain, “Pujiang No.2”, was developed to overcome this shortcoming. As a proteasome inhibitor, bortezomib (PS-341) has...

    Authors: Shan-Shan Zhao, Xiao-Lei Su, Rong-Jia Pan, Li-Qun Lu, Guo-Dong Zheng and Shu-Ming Zou
    Citation: BMC Genomics 2022 23:162
    Content type: Research Published on:

  8. Paris polyphylla is a herb widely used in traditional Chinese medicine to treat various diseases. Stem rot diseases seriously affected the yield of P. polyphylla in subtropical areas of China. Therefore, cost-eff...

    Authors: Aiming Jiang, Chengwu Zou, Xiang Xu, Zunwei Ke, Jiangan Hou, Guihe Jiang, Chunli Fan, Jianhua Gong and Jiguang Wei
    Citation: BMC Genomics 2022 23:161
    Content type: Research Published on:

  9. Whole genomes are commonly assembled into a collection of scaffolds and often lack annotations of autosomes, sex chromosomes, and organelle genomes (i.e., mitochondrial and chloroplast). As these chromosome ty...

    Authors: Charles Christian Riis Hansen, Kristen M. Westfall and Snæbjörn Pálsson
    Citation: BMC Genomics 2022 23:160
    Content type: Research Published on:

  10. ‘Nebbiolo’ is a grapevine cultivar typical of north-western Italy, appreciated for producing high-quality red wines. Grapevine cultivars are characterized by possessing highly heterozygous genomes, including a...

    Authors: Simone Maestri, Giorgio Gambino, Giulia Lopatriello, Andrea Minio, Irene Perrone, Emanuela Cosentino, Barbara Giovannone, Luca Marcolungo, Massimiliano Alfano, Stephane Rombauts, Dario Cantu, Marzia Rossato, Massimo Delledonne and Luciano Calderón
    Citation: BMC Genomics 2022 23:159
    Content type: Research Published on:

  11. Fusarium langsethiae is a T-2 and HT-2 mycotoxins producing species firstly characterised in 2004. It is commonly isolated from oats in Northern Europe. T-2 and HT-2 mycotoxins exhibit immunological and haemotolo...

    Authors: Ya Zuo, Carol Verheecke-Vaessen, Corentin Molitor, Angel Medina, Naresh Magan and Fady Mohareb
    Citation: BMC Genomics 2022 23:158
    Content type: Research Published on:

  12. Pacific Biosciences HiFi read technology is currently the industry standard for high accuracy long-read sequencing that has been widely adopted by large sequencing and assembly initiatives for generation of de...

    Authors: Sheina B. Sim, Renee L. Corpuz, Tyler J. Simmonds and Scott M. Geib
    Citation: BMC Genomics 2022 23:157
    Content type: Software Published on:

  13. Patient-derived xenografts (PDX) mice models play an important role in preclinical trials and personalized medicine. Sharing data on the models is highly valuable for numerous reasons – ethical, economical, re...

    Authors: Zdenka Dudová, Nathalie Conte, Jeremy Mason, Dalibor Stuchlík, Radim Peša, Csaba Halmagyi, Zinaida Perova, Abayomi Mosaku, Ross Thorne, Alex Follette, Ľuboslav Pivarč, Radim Šašinka, Muhammad Usman, Steven Neuhauser, Dale A. Begley, Debra M. Krupke…
    Citation: BMC Genomics 2022 23:156
    Content type: Database Published on:

  14. Accurate variant detection in the coding regions of the human genome is a key requirement for molecular diagnostics of Mendelian disorders. Efficiency of variant discovery from next-generation sequencing (NGS)...

    Authors: Yury A. Barbitoff, Ruslan Abasov, Varvara E. Tvorogova, Andrey S. Glotov and Alexander V. Predeus
    Citation: BMC Genomics 2022 23:155
    Content type: Research article Published on:

  15. Plant miRNAs are a class of small non-coding RNAs that can repress gene expression at the post-transcriptional level by targeting RNA degradation or promoting translational repression. There is increasing evid...

    Authors: Juan M. Crescente, Diego Zavallo, Mariana del Vas, Sebastián Asurmendi, Marcelo Helguera, Elmer Fernandez and Leonardo S. Vanzetti
    Citation: BMC Genomics 2022 23:154
    Content type: Research article Published on:

  16. global trade in living plants and plant material has significantly increased the geographic distribution of many plant pathogens. As a consequence, several pathogens have been first found and described in thei...

    Authors: Tetyana Tsykun, Simone Prospero, Corine N. Schoebel, Alexander Rea and Treena I. Burgess
    Citation: BMC Genomics 2022 23:153
    Content type: Research article Published on:

  17. Biocontrol agents are sustainable eco-friendly alternatives for chemical pesticides that cause adverse effects in the environment and toxicity in animals including humans. An improved understanding of the phyl...

    Authors: Claudia Y. Muñoz, Lu Zhou, Yunhai Yi and Oscar P. Kuipers
    Citation: BMC Genomics 2022 23:152
    Content type: Research Published on:

  18. The oocyte development ability of prepubertal animals is significantly lower than that of adult animals. Granulosa cells (GCs) have an important function on regulation of follicular and oocyte development. The...

    Authors: Hao Tian, Panyu Ren, Kailing Liu, Chunjuan Qiu, Lihong Fan, Junlong Li and Jian Hou
    Citation: BMC Genomics 2022 23:151
    Content type: Research article Published on:

  19. Zinc finger homeodomain (ZHD) protein is a plant-specific transcription factor and a potential regulator of phosphoenolpyruvate carboxylase (PEPCase)-coding genes, and it also participates in plant growth regu...

    Authors: Kai He, Chunxin Li, Zhenyue Zhang, Lifeng Zhan, Chunlong Cong, Depeng Zhang and Hua Cai
    Citation: BMC Genomics 2022 23:150
    Content type: Research Published on:

  20. Transgenic animal models are crucial for the study of gene function and disease, and are widely utilized in basic biological research, agriculture and pharma industries. Since the current methods for generatin...

    Authors: Vanja Börjesson, Angela Martinez-Monleon, Susanne Fransson, Per Kogner, John Inge Johnsen, Jelena Milosevic and Marcela Dávila López
    Citation: BMC Genomics 2022 23:149
    Content type: Software Published on:

  21. While large genome-wide association studies have identified nearly one thousand loci associated with variation in blood pressure, rare variant identification is still a challenge. In family-based cohorts, geno...

    Authors: Karen Y. He, Tanika N. Kelly, Heming Wang, Jingjing Liang, Luke Zhu, Brian E. Cade, Themistocles L. Assimes, Lewis C. Becker, Amber L. Beitelshees, Lawrence F. Bielak, Adam P. Bress, Jennifer A. Brody, Yen-Pei Christy Chang, Yi-Cheng Chang, Paul S. de Vries, Ravindranath Duggirala…
    Citation: BMC Genomics 2022 23:148
    Content type: Research article Published on:

  22. Among the Mangifera species, mango (Mangifera indica) is an important commercial fruit crop. However, very few studies have been conducted on the Mangifera mitochondrial genome. This study reports and compares th...

    Authors: Yingfeng Niu, Chengwen Gao and Jin Liu
    Citation: BMC Genomics 2022 23:147
    Content type: Research Published on:

  23. Deciphering the hereditary mechanism of seed iron (Fe) and zinc (Zn) content in soybean is important and sustainable to address the “hidden hunger” that presently affects approximately 2 billion people worldwi...

    Authors: Huan Wang, Jia Jia, Zhandong Cai, Mingming Duan, Ze Jiang, Qiuju Xia, Qibin Ma, Tengxiang Lian and Hai Nian
    Citation: BMC Genomics 2022 23:146
    Content type: Research Published on:

  24. Lysine 2-hydroxyisobutyrylation (Khib) is a newly discovered posttranslational modification (PTM) and has been identified in several prokaryotic and eukaryotic organisms. Fusarium graminearum, a major pathogen of...

    Authors: Yanxiang Zhao, Limin Zhang, Chao Ju, Xiaoyan Zhang and Jinguang Huang
    Citation: BMC Genomics 2022 23:145
    Content type: Research Published on:

  25. DNA methylation is thought to influence the expression of genes, especially in response to changing environmental conditions and developmental changes. Sugar beet (Beta vulgaris ssp. vulgaris), and other biennial...

    Authors: Sindy Gutschker, José María Corral, Alfred Schmiedl, Frank Ludewig, Wolfgang Koch, Karin Fiedler-Wiechers, Olaf Czarnecki, Karsten Harms, Isabel Keller, Cristina Martins Rodrigues, Benjamin Pommerrenig, H. Ekkehard Neuhaus, Wolfgang Zierer, Uwe Sonnewald and Christina Müdsam
    Citation: BMC Genomics 2022 23:144
    Content type: Research Published on:

  26. Animal genomes are strikingly conserved in terms of local gene order (microsynteny). While some of these microsyntenies have been shown to be coregulated or to form gene regulatory blocks, the diversity of the...

    Authors: Nicolas S. M. Robert, Fatih Sarigol, Bob Zimmermann, Axel Meyer, Christian R. Voolstra and Oleg Simakov
    Citation: BMC Genomics 2022 23:143
    Content type: Research article Published on:

  27. Osteosarcoma is the most common primary malignant tumour of bone occurring in children and young adolescents and is characterised by complex genetic and epigenetic changes. The miRNA miR-486-5p has been shown ...

    Authors: Heidi M. Namløs, Magne Skårn, Deeqa Ahmed, Iwona Grad, Kim Andresen, Stine H. Kresse, Else Munthe, Massimo Serra, Katia Scotlandi, Antonio Llombart-Bosch, Ola Myklebost, Guro E. Lind and Leonardo A. Meza-Zepeda
    Citation: BMC Genomics 2022 23:142
    Content type: Research Published on:

  29. Cashmere goat is famous for its high-quality fibers. The growth of cashmere in secondary hair follicles exhibits a seasonal pattern arising from circannual changes in the natural photoperiod. Although several ...

    Authors: Chun Li, Cong Feng, Guangyuan Ma, Shaoyin Fu, Ming Chen, Wenguang Zhang and Jinquan Li
    Citation: BMC Genomics 2022 23:140
    Content type: Research Published on:

  31. Molecular breeding accelerates the speed of animal breeding. Screening molecular markers that can affect economic traits through genome-wide association studies (GWAS) can provide a theoretical basis for molec...

    Authors: Chengjie Wei, Yufang Niu, Bingjie Chen, Panpan Qin, Yanxing Wang, Dan Hou, Tong Li, Ruiting Li, Chunxiu Wang, Huadong Yin, Ruili Han, Huifen Xu, Yadong Tian, Xiaojun Liu, Xiangtao Kang and Zhuanjian Li
    Citation: BMC Genomics 2022 23:138
    Content type: Research Published on:

  32. Wucai suffers from low temperature during the growth period, resulting in a decline in yield and poor quality. But the molecular mechanisms of cold tolerance in wucai are still unclear.

    Authors: Chenggang Wang, Mengyun Zhang, Jiajie Zhou, Xun Gao, Shidong Zhu, Lingyun Yuan, Xilin Hou, Tongkun Liu, Guohu Chen, Xiaoyan Tang, Guolei Shan and Jinfeng Hou
    Citation: BMC Genomics 2022 23:137
    Content type: Research Published on:

  33. All birds reproduce via internal fertilization, but only ~3% of male birds possess the external genitalia that allows for intromission. Waterfowl (e.g., duck and goose) are representatives of them, and the ext...

    Authors: Bincheng Tang, Shenqiang Hu, Qingyuan Ouyang, Tianhao Wu, Yao Lu, Jiwei Hu, Bo Hu, Liang Li and Jiwen Wang
    Citation: BMC Genomics 2022 23:136
    Content type: Research Published on:

  35. The collective of somatic mutations in a genome represents a record of mutational processes that have been operative in a cell. These processes can be investigated by extracting relevant mutational patterns fr...

    Authors: Freek Manders, Arianne M. Brandsma, Jurrian de Kanter, Mark Verheul, Rurika Oka, Markus J. van Roosmalen, Bastiaan van der Roest, Arne van Hoeck, Edwin Cuppen and Ruben van Boxtel
    Citation: BMC Genomics 2022 23:134
    Content type: Software Published on:

  36. Imputation from genotyping array to whole-genome sequence variants using resequencing of representative reference populations enhances our ability to map genetic factors affecting complex phenotypes in livesto...

    Authors: Zexi Cai, Ole Fredslund Christensen, Mogens Sandø Lund, Tage Ostersen and Goutam Sahana
    Citation: BMC Genomics 2022 23:133
    Content type: Research Published on:

  37. Long non-coding RNAs (lncRNAs) play essential roles in developmental processes and disease development at the transcriptional and post-transcriptional levels across diverse taxa. However, only few studies have...

    Authors: Gobong Choi, Jongbum Jeon, Hyunjun Lee, Shenxian Zhou and Yong-Hwan Lee
    Citation: BMC Genomics 2022 23:132
    Content type: Research Published on:

  38. Brachyspira (B.) hyodysenteriae is a fastidious anaerobe spirochete that can cause swine dysentery, a severe mucohaemorragic colitis that affects pig production and animal welfare worldwide. In Switzerland, the p...

    Authors: Ana Belén García-Martín, Thomas Roder, Sarah Schmitt, Friederike Zeeh, Rémy Bruggmann and Vincent Perreten
    Citation: BMC Genomics 2022 23:131
    Content type: Research Published on:

  39. Accurate haplotype reconstruction is required in many applications in quantitative and population genomics. Different phasing methods are available but their accuracy must be evaluated for samples with differe...

    Authors: Claire Oget-Ebrad, Naveen Kumar Kadri, Gabriel Costa Monteiro Moreira, Latifa Karim, Wouter Coppieters, Michel Georges and Tom Druet
    Citation: BMC Genomics 2022 23:130
    Content type: Research Published on:

  41. Toxoplasma gondii is a protozoan parasite that differentiates from acute tachyzoite stages to latent bradyzoite forms in response to environmental cues that modify the epigenome. We studied the distribution of th...

    Authors: Sheila C. Nardelli, Natalie C. Silmon de Monerri, Laura Vanagas, Xiaonan Wang, Zoi Tampaki, William J. Sullivan Jr, Sergio O. Angel and Kami Kim
    Citation: BMC Genomics 2022 23:128
    Content type: Research article Published on:

  43. Identifying the genes underlying fitness-related traits such as body size and male ornamentation can provide tools for conservation and management and are often subject to various selective pressures. Here we ...

    Authors: S. J. Anderson, S. D. Côté, J. H. Richard and A. B. A. Shafer
    Citation: BMC Genomics 2022 23:126
    Content type: Research Published on:

  44. As one of the largest transcription factor families in plants, the APETALA2/Ethylene-Responsive Factor (AP2/ERF) superfamily is involved in various biological processes and plays significant roles in plant gro...

    Authors: Jing Zhang, Jiayao Liao, Qiqi Ling, Yan Xi and Yexiong Qian
    Citation: BMC Genomics 2022 23:125
    Content type: Research Published on:

  45. Plant volatiles play an important role in both plant-pollinator and plant-herbivore interactions. Intraspecific polymorphisms in volatile production are ubiquitous, but studies that explore underlying differen...

    Authors: Lindsey L. Bechen, Matthew G. Johnson, Geoffrey T. Broadhead, Rachel A. Levin, Rick P. Overson, Tania Jogesh, Jeremie B. Fant, Robert A. Raguso, Krissa A. Skogen and Norman J. Wickett
    Citation: BMC Genomics 2022 23:124
    Content type: Research Published on:

  46. The Natterin protein family was first discovered in the venom of the medically significant fish Thalassophryne nattereri, and over the last decade natterin-like genes have been identified in various organisms, no...

    Authors: Ana Carolina Seni-Silva, Adolfo Luis Almeida Maleski, Milena Marcolino Souza, Maria Alice Pimentel Falcao, Geonildo Rodrigo Disner, Monica Lopes-Ferreira and Carla Lima
    Citation: BMC Genomics 2022 23:123
    Content type: Research Published on:

  47. Mammalian sex chromosomes provide dosage compensation, but avian lack a global mechanism of dose compensation. Herein, we employed nanopore sequencing to investigate the genetic basis of gene expression and ge...

    Authors: Jianmei Wang, Yang Xi, Shengchao Ma, Jingjing Qi, Junpeng Li, Rongping Zhang, Chunchun Han, Liang Li, Jiwen Wang and Hehe Liu
    Citation: BMC Genomics 2022 23:122
    Content type: Research article Published on:

  48. More than 2 million SARS-CoV-2 genome sequences have been generated and shared since the start of the COVID-19 pandemic and constitute a vital information source that informs outbreak control, disease surveill...

    Authors: Áine O’Toole, Oliver G. Pybus, Michael E. Abram, Elizabeth J. Kelly and Andrew Rambaut
    Citation: BMC Genomics 2022 23:121
    Content type: Research article Published on:

  49. An amendment to this paper has been published and can be accessed via the original article.

    Authors: Jiazhong Guo, Rui Jiang, Ayi Mao, George E. Liu, Siyuan Zhan, Li Li, Tao Zhong, Linjie Wang, Jiaxue Cao, Yu Chen, Guojun Zhang and Hongping Zhang
    Citation: BMC Genomics 2022 23:117
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2021 22:769

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BMC Genomics

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