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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 48 of 128

  1. Fungal conidia are usually dormant unless the extracellular conditions are right for germination. Despite the importance of dormancy, little is known about the molecular mechanism underlying entry to, maintena...

    Authors: Daisuke Hagiwara, Hiroki Takahashi, Yoko Kusuya, Susumu Kawamoto, Katsuhiko Kamei and Tohru Gonoi
    Citation: BMC Genomics 2016 17:358
    Content type: Research article Published on:

  2. Differential accessibility of DNA to nuclear proteins underlies the regulation of numerous cellular processes. Although DNA accessibility is primarily determined by the presence or absence of nucleosomes, diff...

    Authors: Poshen B Chen, Lihua J Zhu, Sarah J Hainer, Kurtis N McCannell and Thomas G Fazzio
    Citation: BMC Genomics 2014 15:1104
    Content type: Research article Published on:

  3. DNA replication in trypanosomatids operates in a uniquely challenging environment, since most of their genomes are constitutively transcribed. Trypanosoma cruzi, the etiological agent of Chagas disease, presents ...

    Authors: Christiane Bezerra de Araujo, Julia Pinheiro Chagas da Cunha, Davi Toshio Inada, Jeziel Damasceno, Alex Ranieri Jerônimo Lima, Priscila Hiraiwa, Catarina Marques, Evonnildo Gonçalves, Milton Yutaka Nishiyama-Junior, Richard McCulloch and Maria Carolina Elias
    Citation: BMC Genomics 2020 21:414
    Content type: Research article Published on:

  4. Motifs are regulatory elements that will activate or inhibit the expression of related genes when proteins (such as transcription factors, TFs) bind to them. Therefore, motif finding is important to understand...

    Authors: Yizhe Zhang, Yupeng He, Guangyong Zheng and Chaochun Wei
    Citation: BMC Genomics 2015 16(Suppl 7):S13
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 7

  5. Ananas comosus var. bracteatus is a colorful plant used as a cut flower or landscape ornamental. The unique foliage color of this plant includes both green and red leaves and, as a trait of interest, deserves inv...

    Authors: Xuzixin Zhou, Yanbin Xue, Meiqin Mao, Yehua He, Mark Owusu Adjei, Wei Yang, Hao Hu, Jiawen Liu, Lijun Feng, Huiling Zhang, Jiaheng Luo, Xi Li, Lingxia Sun, Zhuo Huang and Jun Ma
    Citation: BMC Genomics 2021 22:331
    Content type: Research article Published on:

  6. Huanglongbing (HLB) and tristeza, are diseases of citrus caused by a member of the α-proteobacteria, ‘Candidatus Liberibacter asiaticus’ (CaLas), and Citrus tristeza virus (CTV) respectively. HLB is a devastating...

    Authors: Shimin Fu, Jonathan Shao, Changyong Zhou and John S. Hartung
    Citation: BMC Genomics 2016 17:349
    Content type: Research article Published on:

  7. Cowpea, Vigna unguiculata (L.) Walp., is one of the most important food and forage legumes in the semi-arid tropics because of its drought tolerance and ability to grow on poor quality soils. Approximately 80% of...

    Authors: Michael P Timko, Paul J Rushton, Thomas W Laudeman, Marta T Bokowiec, Edmond Chipumuro, Foo Cheung, Christopher D Town and Xianfeng Chen
    Citation: BMC Genomics 2008 9:103
    Content type: Research article Published on:

  8. In post-partum dairy cows, the energy needs to satisfy high milk production induces a status of more or less pronounced Negative Energy Balance (NEB). NEB associated with fat mobilization impairs reproductive ...

    Authors: Wiruntita Chankeaw, Sandra Lignier, Christophe Richard, Theodoros Ntallaris, Mariam Raliou, Yongzhi Guo, Damien Plassard, Claudia Bevilacqua, Olivier Sandra, Göran Andersson, Patrice Humblot and Gilles Charpigny
    Citation: BMC Genomics 2021 22:450
    Content type: Research article Published on:

    The Research article to this article has been published in BMC Genomics 2021 22:451

  9. The Streptomyces albus J1074 strain is one of the most widely used chassis for the heterologous production of bioactive natural products. The fast growth and an efficient genetic system make this strain an attrac...

    Authors: Nestor Zaburannyi, Mariia Rabyk, Bohdan Ostash, Victor Fedorenko and Andriy Luzhetskyy
    Citation: BMC Genomics 2014 15:97
    Content type: Research article Published on:

  10. Deregulation of Wnt/β-catenin signaling is a hallmark of the majority of sporadic forms of colorectal cancer and results in increased stability of the protein β-catenin. β-catenin is then shuttled into the nuc...

    Authors: Andreas Herbst, Vindi Jurinovic, Stefan Krebs, Susanne E Thieme, Helmut Blum, Burkhard Göke and Frank T Kolligs
    Citation: BMC Genomics 2014 15:74
    Content type: Research article Published on:

  11. Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical ...

    Authors: Ahmad Yamin Abdul Rahman, Abhilash O Usharraj, Biswapriya B Misra, Gincy P Thottathil, Kandakumar Jayasekaran, Yun Feng, Shaobin Hou, Su Yean Ong, Fui Ling Ng, Ling Sze Lee, Hock Siew Tan, Muhd Khairul Luqman Muhd Sakaff, Beng Soon Teh, Bee Feong Khoo, Siti Suriawati Badai, Nurohaida Ab Aziz…
    Citation: BMC Genomics 2013 14:75
    Content type: Research article Published on:

  13. The peri-implantation period is a critical time during pregnancy that mostly defines the overall litter size. Most authors agree that the highest percentage of embryo mortality occurs during this time. Despite...

    Authors: Kamil Dobrzyn, Marta Kiezun, Grzegorz Kopij, Barbara Zarzecka, Marlena Gudelska, Katarzyna Kisielewska, Ewa Zaobidna, Karol G. Makowczenko, Cecilia Dall’Aglio, Tadeusz Kamiński and Nina Smolińska
    Citation: BMC Genomics 2024 25:501
    Content type: Research Published on:

  14. Gamma-irradiated mutants of Triticum aestivum L., hexaploid wheat, provide novel and agriculturally important traits and are used as breeding materials. However, the identification of causative genomic regions of...

    Authors: Shoya Komura, Hironobu Jinno, Tatsuya Sonoda, Youko Oono, Hirokazu Handa, Shigeo Takumi, Kentaro Yoshida and Fuminori Kobayashi
    Citation: BMC Genomics 2022 23:111
    Content type: Research Published on:

  15. Populations of Atlantic killifish (Fundulus heteroclitus) have evolved resistance to the embryotoxic effects of polychlorinated biphenyls (PCBs) and other halogenated and nonhalogenated aromatic hydrocarbons that...

    Authors: Marjorie F Oleksiak, Sibel I Karchner, Matthew J Jenny, Diana G Franks, David B Mark Welch and Mark E Hahn
    Citation: BMC Genomics 2011 12:263
    Content type: Research article Published on:

  16. The human placenta facilitates the exchange of nutrients, gas and waste between the fetal and maternal circulations. It also protects the fetus from the maternal immune response. Due to its role at the feto-ma...

    Authors: Boris Novakovic, Ryan K Yuen, Lavinia Gordon, Maria S Penaherrera, Andrew Sharkey, Ashley Moffett, Jeffrey M Craig, Wendy P Robinson and Richard Saffery
    Citation: BMC Genomics 2011 12:529
    Content type: Research article Published on:

  17. Comparative genomics methods enable the reconstruction of bacterial regulatory networks using available experimental data. In spite of their potential for accelerating research into the composition and evoluti...

    Authors: Sefa Kılıç, Miquel Sánchez-Osuna, Antonio Collado-Padilla, Jordi Barbé and Ivan Erill
    Citation: BMC Genomics 2020 21(Suppl 5):466
    Content type: Research Published on:

    This article is part of a Supplement: Volume 21 Supplement 5

  18. The development and maintenance of the prostate is dependent on androgens and the androgen receptor. The androgen pathway continues to be important in prostate cancer. Here, we evaluated the transcriptome of p...

    Authors: Tammy L Romanuik, Gang Wang, Robert A Holt, Steven JM Jones, Marco A Marra and Marianne D Sadar
    Citation: BMC Genomics 2009 10:476
    Content type: Research article Published on:

  19. The role of viruses as members of the human microbiome has gained broader attention with the discovery that human body surfaces are inhabited by sizeable viral communities. The majority of the viruses identifi...

    Authors: Tasha M. Santiago-Rodriguez, Mayuri Naidu, Shira R. Abeles, Tobias K. Boehm, Melissa Ly and David T. Pride
    Citation: BMC Genomics 2015 16:549
    Content type: Research article Published on:

  20. DNA methylation and histone deacetylation are epigenetic mechanisms that play major roles in eukaryotic gene regulation. We hypothesize that many genes in the human hepatoma cell line HepG2 are regulated by DN...

    Authors: Luke O Dannenberg and Howard J Edenberg
    Citation: BMC Genomics 2006 7:181
    Content type: Research article Published on:

  22. In temperate regions, the time lag between vegetative bud burst and bud set determines the duration of the growing season of trees (i.e. the duration of wood biomass production). Dormancy, the period during wh...

    Authors: Saneyoshi Ueno, Christophe Klopp, Jean Charles Leplé, Jérémy Derory, Céline Noirot, Valérie Léger, Elodie Prince, Antoine Kremer, Christophe Plomion and Grégoire Le Provost
    Citation: BMC Genomics 2013 14:236
    Content type: Research article Published on:

  23. Hydrothermal vents and cold seeps represent oases of life in the deep-sea environment, but are also characterized by challenging physical and chemical conditions. The effect of temperature fluctuations on vent...

    Authors: Isabelle Boutet, Didier Jollivet, Bruce Shillito, Dario Moraga and Arnaud Tanguy
    Citation: BMC Genomics 2009 10:222
    Content type: Research article Published on:

  24. It has been demonstrated that the umbilical cord matrix, represented by the Wharton’s Jelly (WJ), contains a great number of mesenchymal stem cells (MSCs), characterized by the expression of specific MSCs mark...

    Authors: Valentina Gatta, Marco D’Aurora, Paola Lanuti, Laura Pierdomenico, Samantha Sperduti, Giandomenico Palka, Marco Gesi, Marco Marchisio, Sebastiano Miscia and Liborio Stuppia
    Citation: BMC Genomics 2013 14:635
    Content type: Research article Published on:

  26. Bovine papillomavirus (BPV) belongs to the Papillomaviridae family and infects epithelial cells of bovines and closely related animals, causing hyperproliferative lesions known as warts or papillomas, which ma...

    Authors: Débora M. Barreto, Gerlane S. Barros, Lucas A. B. O. Santos, Rosilene C. Soares and Marcus V. A. Batista
    Citation: BMC Genomics 2018 19:949
    Content type: Research article Published on:

  27. Bacterial small RNAs (sRNAs) are recognized as posttranscriptional regulators involved in the control of bacterial lifestyle and adaptation to stressful conditions. Although chemical stress due to the toxicity...

    Authors: Martin Holm Rau, Klara Bojanovič, Alex Toftgaard Nielsen and Katherine S. Long
    Citation: BMC Genomics 2015 16:1051
    Content type: Research article Published on:

  28. Conducting genome-wide association studies (GWAS) for reproductive traits in Hanwoo cattle, including age at first calving (AFC), calving interval (CI), gestation length (GL), and number of artificial insemina...

    Authors: Md Azizul Haque, Yun-Mi Lee, Jae-Jung Ha, Shil Jin, Byoungho Park, Nam-Young Kim, Jeong-Il Won and Jong-Joo Kim
    Citation: BMC Genomics 2024 25:496
    Content type: Research Published on:

  30. Emerging evidences suggest that enteric glial cells (EGC), a major constituent of the enteric nervous system (ENS), are key regulators of intestinal epithelial barrier (IEB) functions. Indeed EGC inhibit intes...

    Authors: Laurianne Van Landeghem, Maxime M Mahé, Raluca Teusan, Jean Léger, Isabelle Guisle, Rémi Houlgatte and Michel Neunlist
    Citation: BMC Genomics 2009 10:507
    Content type: Research article Published on:

  31. It is widely known that castration has a significant effect on the accumulation of adipose tissue. microRNAs (miRNAs) are known to be involved in fat deposition and to be regulated by the androgen-induced andr...

    Authors: Ying Bai, Jin-Ming Huang, Gang Liu, Ji-Bin Zhang, Jian-Ying Wang, Cheng-Kun Liu and Mei-Ying Fang
    Citation: BMC Genomics 2014 15:47
    Content type: Research article Published on:

  33. The domestic pig is an important livestock species and there is strong interest in the factors that affect the development of viable embryos and offspring in this species. A limited understanding of the molecu...

    Authors: Stephen Tsoi, Chi Zhou, Jason R Grant, J Alexander Pasternak, John Dobrinsky, Philippe Rigault, Julie Nieminen, Marc-André Sirard, Claude Robert, George R Foxcroft and Michael K Dyck
    Citation: BMC Genomics 2012 13:370
    Content type: Research article Published on:

  34. Marek’s disease (MD) is a commercially important neoplastic disease of chickens caused by the Marek’s disease virus (MDV), a naturally occurring oncogenic alphaherpesvirus. Enhancing MD genetic resistance is d...

    Authors: Sudeep Perumbakkam, William M Muir, Alexis Black-Pyrkosz, Ron Okimoto and Hans H Cheng
    Citation: BMC Genomics 2013 14:64
    Content type: Research article Published on:

  35. Plant phenolics are important nutritional antioxidants which could aid in overcoming chronic diseases such as cardiovascular disease and cancer, two leading causes of death in the world. The oil palm (Elaeis guin...

    Authors: Soon-Sen Leow, Shamala Devi Sekaran, Kalyana Sundram, YewAi Tan and Ravigadevi Sambanthamurthi
    Citation: BMC Genomics 2011 12:432
    Content type: Research article Published on:

  36. The Fagaceae family comprises about 1,000 woody species worldwide. About half belong to the Quercus family. These oaks are often a source of raw material for biomass wood and fiber. Pedunculate and sessile oaks, ...

    Authors: Saneyoshi Ueno, Grégoire Le Provost, Valérie Léger, Christophe Klopp, Céline Noirot, Jean-Marc Frigerio, Franck Salin, Jérôme Salse, Michael Abrouk, Florent Murat, Oliver Brendel, Jérémy Derory, Pierre Abadie, Patrick Léger, Cyril Cabane, Aurélien Barré…
    Citation: BMC Genomics 2010 11:650
    Content type: Research article Published on:

  37. Long intergenic noncoding RNAs (lincRNAs) have been recognized in recent years as key regulators of biological processes. However, lincRNAs in goat remain poorly characterized both across various tissues and d...

    Authors: Shen Song, Min Yang, Yefang Li, Marhaba Rouzi, Qianjun Zhao, Yabin Pu, Xiaohong He, Joram M. Mwacharo, Ning Yang, Yuehui Ma and Lin Jiang
    Citation: BMC Genomics 2018 19:495
    Content type: Research article Published on:

  38. In many taxa, males and females are very distinct phenotypically, and these differences often reflect divergent selective pressures acting on the sexes. Phenotypic sexual dimorphism almost certainly reflects d...

    Authors: Clayton M Small, Ginger E Carney, Qianxing Mo, Marina Vannucci and Adam G Jones
    Citation: BMC Genomics 2009 10:579
    Content type: Research article Published on:

  39. Beef cuts in different regions of the carcass have different meat quality due to their distinct physiological function. The objective of this study was to characterize the region-specific expression difference...

    Authors: Tianliu Zhang, Tianzhen Wang, Qunhao Niu, Xu Zheng, Haipeng Li, Xue Gao, Yan Chen, Huijiang Gao, Lupei Zhang, George E. Liu, Junya Li and Lingyang Xu
    Citation: BMC Genomics 2022 23:387
    Content type: Research Published on:

  40. Blueberries (Vaccinium corymbosum) are regarded as “superfoods” attributed to large amounts of anthocyanins, a group of flavonoid metabolites, which provide pigmentation in plant and beneficial effects for human ...

    Authors: Haiyang Wang, Lulu Zhai, Shouwen Wang, Botian Zheng, Honglu Hu, Xuyan Li and Shaomin Bian
    Citation: BMC Genomics 2023 24:505
    Content type: Research Published on:

  41. Next Generation Sequencing technologies have facilitated differential gene expression analysis through RNA-seq and Tag-seq methods. RNA-seq has biases associated with transcript lengths, lacks uniform coverage...

    Authors: Ghanasyam Rallapalli, Eric M Kemen, Alexandre Robert-Seilaniantz, Cécile Segonzac, Graham J Etherington, Kee Hoon Sohn, Daniel MacLean and Jonathan D G Jones
    Citation: BMC Genomics 2014 15:341
    Content type: Methodology article Published on:

  42. The presence of highly conserved sequences within cis-regulatory regions can serve as a valuable starting point for elucidating the basis of enhancer function. This study focuses on regulation of gene expression ...

    Authors: Thomas Brody, Wayne Rasband, Kevin Baler, Alexander Kuzin, Mukta Kundu and Ward F Odenwald
    Citation: BMC Genomics 2008 9:371
    Content type: Research article Published on:

  44. The androgen receptor plays a critical role throughout the progression of prostate cancer and is an important drug target for this disease. While chromatin immunoprecipitation coupled with massively parallel s...

    Authors: Zhou Zhu, Manli Shi, Wenyue Hu, Heather Estrella, Jon Engebretsen, Tim Nichols, David Briere, Natilie Hosea, Gerrit Los, Paul A Rejto and Andrea Fanjul
    Citation: BMC Genomics 2012 13:355
    Content type: Research article Published on:

  45. Hepatitis C virus (HCV) RNA synthesis and protein expression affect cell homeostasis by modulation of gene expression. The impact of HCV replication on global cell transcription has not been fully evaluated. T...

    Authors: Anna Rita Ciccaglione, Cinzia Marcantonio, Elena Tritarelli, Paola Tataseo, Alessandro Ferraris, Roberto Bruni, Bruno Dallapiccola, Germano Gerosolimo, Angela Costantino and Maria Rapicetta
    Citation: BMC Genomics 2008 9:309
    Content type: Research article Published on:

  46. The Pacific white shrimp (Litopenaeus vannamei) is the world’s most prevalent cultured crustacean species. However, the supply of high-quality broodstocks is limited and baseline information related to its reprod...

    Authors: Jinxia Peng, Pinyuan Wei, Bin Zhang, Yongzhen Zhao, Digang Zeng, Xiuli Chen, Ming Li and Xiaohan Chen
    Citation: BMC Genomics 2015 16:1006
    Content type: Research article Published on:

  47. Astronauts are exposed to 56Fe ions that may pose a significant health hazard during and following prolonged missions in deep space. We showed previously that object recognition requiring the hippocampus, a struc...

    Authors: Soren Impey, Timothy Jopson, Carl Pelz, Amanuel Tafessu, Fatema Fareh, Damian Zuloaga, Tessa Marzulla, Lara-Kirstie Riparip, Blair Stewart, Susanna Rosi, Mitchell S. Turker and Jacob Raber
    Citation: BMC Genomics 2016 17:825
    Content type: Research article Published on:

  48. Production conditions of layer chicken can vary in terms of temperature or diet energy content compared to the controlled environment where pure-bred selection is undertaken. The aim of this study was to bette...

    Authors: F. Jehl, C. Désert, C. Klopp, M. Brenet, A. Rau, S. Leroux, M. Boutin, L. Lagoutte, K. Muret, Y. Blum, D. Esquerré, D. Gourichon, T. Burlot, A. Collin, F. Pitel, A. Benani…
    Citation: BMC Genomics 2019 20:1033
    Content type: Research article Published on:

  49. The pivotal role of stress in the precipitation of psychiatric diseases such as depression is generally accepted. This study aims at the identification of genes that are directly or indirectly responding to st...

    Authors: Amalia Tsolakidou, Ludwig Czibere, Benno Pütz, Dietrich Trümbach, Markus Panhuysen, Jan M Deussing, Wolfgang Wurst, Inge Sillaber, Rainer Landgraf, Florian Holsboer and Theo Rein
    Citation: BMC Genomics 2010 11:546
    Content type: Research article Published on:

  50. The multi-step process of carcinogenesis can be more fully understood by characterizing gene expression changes induced in cells by carcinogens. In this study, expression microarrays were used to monitor the a...

    Authors: Sarah L Hockley, Volker M Arlt, Daniel Brewer, Ian Giddings and David H Phillips
    Citation: BMC Genomics 2006 7:260
    Content type: Research article Published on:

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