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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 61 of 128

  1. The ability of an oocyte to develop into a viable embryo depends on the accumulation of specific maternal information and molecules, such as RNAs and proteins. A serial analysis of gene expression (SAGE) was c...

    Authors: Anja Knoll-Gellida, Michèle André, Tamar Gattegno, Jean Forgue, Arie Admon and Patrick J Babin
    Citation: BMC Genomics 2006 7:46
    Content type: Research article Published on:

  2. The genomes of the three parasitic protozoa Trypanosoma cruzi, Trypanosoma brucei and Leishmania major are the main subject of this study. These parasites are responsible for devastating human diseases known as C...

    Authors: Rachel Brenchley, Humera Tariq, Helen McElhinney, Balázs Szöőr, Julie Huxley-Jones, Robert Stevens, Keith Matthews and Lydia Tabernero
    Citation: BMC Genomics 2007 8:434
    Content type: Research article Published on:

  4. Gynostemma pentaphyllum is an important perennial medicinal herb belonging to the family Cucurbitaceae. Aerial stem-to-rhizome transition before entering the winter is an adaptive regenerative strategy in G. pent...

    Authors: Qi Yang, Shibiao Liu, Xiaoning Han, Jingyi Ma, Wenhong Deng, Xiaodong Wang, Huihong Guo and Xinli Xia
    Citation: BMC Genomics 2019 20:865
    Content type: Research article Published on:

  5. During host specialization, inactivation of genes whose function is no more required is favored by changes in selective constraints and evolutionary bottlenecks. The Gram positive bacteria Streptococcus agalactia...

    Authors: Isabelle Rosinski-Chupin, Elisabeth Sauvage, Barbara Mairey, Sophie Mangenot, Laurence Ma, Violette Da Cunha, Christophe Rusniok, Christiane Bouchier, Valérie Barbe and Philippe Glaser
    Citation: BMC Genomics 2013 14:252
    Content type: Research article Published on:

  6. While the genomic era is accumulating a tremendous amount of data, the question of how genomics can describe a bacterial species remains to be fully addressed. The recent sequencing of the genome of the Mycoplasm...

    Authors: Laurent X Nouvel, Pascal Sirand-Pugnet, Marc S Marenda, Eveline Sagné, Valérie Barbe, Sophie Mangenot, Chantal Schenowitz, Daniel Jacob, Aurélien Barré, Stéphane Claverol, Alain Blanchard and Christine Citti
    Citation: BMC Genomics 2010 11:86
    Content type: Research article Published on:

  7. Prokaryotic microorganisms are able to survive and proliferate in severe environmental conditions. The increasing number of complete sequences of prokaryotic genomes has provided the basis for studying the mol...

    Authors: Konstantin V Gunbin, Dmitry A Afonnikov and Nikolay A Kolchanov
    Citation: BMC Genomics 2009 10:639
    Content type: Research article Published on:

  8. Ribosomes are essential ribonucleoprotein complexes that are engaged in translation and thus indispensable for growth. Arabidopsis thaliana ribosomes are composed of 80 distinct ribosomal proteins (RPs), each of ...

    Authors: Jinyan Wang, Ping Lan, Huimin Gao, Lu Zheng, Wenfeng Li and Wolfgang Schmidt
    Citation: BMC Genomics 2013 14:783
    Content type: Research article Published on:

  9. The understanding of the biological function, regulation, and cellular interactions of the yeast genome and proteome, along with the high conservation in gene function found between yeast genes and their human...

    Authors: Adriana Arita, Xue Zhou, Thomas P Ellen, Xin Liu, Jingxiang Bai, John P Rooney, Adrienne Kurtz, Catherine B Klein, Wei Dai, Thomas J Begley and Max Costa
    Citation: BMC Genomics 2009 10:524
    Content type: Research article Published on:

  10. Molecular mechanisms associated with sexual dimorphism in cattle have not been well elucidated. Furthermore, as recent studies have implied that gene expression patterns are highly tissue specific, it is essen...

    Authors: Minseok Seo, Kelsey Caetano-Anolles, Sandra Rodriguez-Zas, Sojeong Ka, Jin Young Jeong, Sungkwon Park, Min Ji Kim, Whan-Gook Nho, Seoae Cho, Heebal Kim and Hyun-Jeong Lee
    Citation: BMC Genomics 2016 17:81
    Content type: Research article Published on:

  11. Leishmania are obligated intracellular pathogens that replicate almost exclusively in macrophages. The outcome of infection depends largely on parasite pathogenicity and virulence but also on the activation statu...

    Authors: Imen Rabhi, Sameh Rabhi, Rym Ben-Othman, Mohamed Radhouane Aniba, Bernadette Trentin, David Piquemal, Béatrice Regnault and Lamia Guizani-Tabbane
    Citation: BMC Genomics 2013 14:723
    Content type: Research article Published on:

  12. Trimethoprim is a widely prescribed antibiotic for a variety of bacterial infections. It belongs to a class of anti-metabolites - antifolates - which includes drugs used against malarial parasites and in cance...

    Authors: Dipen P Sangurdekar, Zhigang Zhang and Arkady B Khodursky
    Citation: BMC Genomics 2011 12:583
    Content type: Research article Published on:

  14. A molecular process based genotype-to-phenotype map will ultimately enable us to predict how genetic variation among individuals results in phenotypic alterations. Building such a map is, however, far from str...

    Authors: Sergey V Nuzhdin, Jennifer A Brisson, Andrew Pickering, Marta L Wayne, Lawrence G Harshman and Lauren M McIntyre
    Citation: BMC Genomics 2009 10:124
    Content type: Research article Published on:

  15. Defects in airway mucosal defense, including decreased mucus clearance, contribute to the pathogenesis of human chronic obstructive pulmonary diseases. Scnn1b-Tg mice, which exhibit chronic airway surface dehydra...

    Authors: Yogesh Saini, Hong Dang, Alessandra Livraghi-Butrico, Elizabeth J Kelly, Lisa C Jones, Wanda K O’Neal and Richard C Boucher
    Citation: BMC Genomics 2014 15:726
    Content type: Research article Published on:

  16. Water temperature greatly influences the physiology and behaviour of teleost fish as other aquatic organisms. While fish are able to cope with seasonal temperature variations, thermal excursions outside their ...

    Authors: Alba N Mininni, Massimo Milan, Serena Ferraresso, Tommaso Petochi, Patrizia Di Marco, Giovanna Marino, Silvia Livi, Chiara Romualdi, Luca Bargelloni and Tomaso Patarnello
    Citation: BMC Genomics 2014 15:765
    Content type: Research article Published on:

  17. Comparative analysis of tissue-specific transcriptomes is a powerful technique to uncover tissue functions. Our FlyAtlas.org provides authoritative gene expression levels for multiple tissues of Drosophila melano...

    Authors: Venkateswara R Chintapalli, Jing Wang, Pawel Herzyk, Shireen A Davies and Julian AT Dow
    Citation: BMC Genomics 2013 14:518
    Content type: Review Published on:

  18. Small RNAs have proven to be essential regulatory molecules encoded within eukaryotic genomes. These short RNAs participate in a diverse array of cellular processes including gene regulation, chromatin dynamic...

    Authors: James Lindsay, Dawn M Carone, Judy Brown, Laura Hall, Sohaib Qureshi, Sarah E Mitchell, Nicholas Jannetty, Greg Hannon, Marilyn Renfree, Andrew Pask, Michael O’Neill and Rachel O’Neill
    Citation: BMC Genomics 2012 13:559
    Content type: Research article Published on:

  19. Gene expression profiles can provide insights into the molecular machinery behind tissue functions and, in turn, can further our understanding of environmental responses, and developmental and evolutionary pro...

    Authors: María Torres-Sánchez, Mark Wilkinson, David J. Gower, Christopher J. Creevey and Diego San Mauro
    Citation: BMC Genomics 2020 21:515
    Content type: Research article Published on:

  20. The endosymbiont Wolbachia can manipulate arthropod reproduction and invade host populations by inducing cytoplasmic incompatibility (CI). Some host species are coinfected with multiple Wolbachia strains which ma...

    Authors: Jennifer L. Morrow and Markus Riegler
    Citation: BMC Genomics 2021 22:616
    Content type: Research Published on:

  21. Protein structure comparison and classification is an effective method for exploring protein structure-function relations. This problem is computationally challenging. Many different computational approaches f...

    Authors: Cody Ashby, Daniel Johnson, Karl Walker, Iyad A Kanj, Ge Xia and Xiuzhen Huang
    Citation: BMC Genomics 2013 14(Suppl 2):S1
    Content type: Research Published on:

    This article is part of a Supplement: Volume 14 Supplement 2

  22. Gene expression analysis by RNA sequencing is now widely used in a number of applications surveying the whole transcriptomes of cells and tissues. The recent introduction of ribosomal RNA depletion protocols, ...

    Authors: Marc Sultan, Vyacheslav Amstislavskiy, Thomas Risch, Moritz Schuette, Simon Dökel, Meryem Ralser, Daniela Balzereit, Hans Lehrach and Marie-Laure Yaspo
    Citation: BMC Genomics 2014 15:675
    Content type: Research article Published on:

  23. Α-gliadins form a multigene protein family encoded by multiple α-gliadin (Gli-2) genes at three genomic loci, Gli-A2, Gli-B2 and Gli-D2, respectively located on the homoeologous wheat chromosomes 6AS, 6BS, and 6D...

    Authors: Elma MJ Salentijn, Svetlana V Goryunova, Noor Bas, Ingrid M van der Meer, Hetty C van den Broeck, Thomas Bastien, Luud JWJ Gilissen and Marinus JM Smulders
    Citation: BMC Genomics 2009 10:48
    Content type: Research article Published on:

  25. The recent emergence of a novel coronavirus in the Middle East (designated MERS-CoV) is a reminder of the zoonotic and pathogenic potential of emerging coronaviruses in humans. Clinical features of Middle East...

    Authors: Christian Selinger, Jennifer Tisoncik-Go, Vineet D Menachery, Sudhakar Agnihothram, G Lynn Law, Jean Chang, Sara M Kelly, Pavel Sova, Ralph S Baric and Michael G Katze
    Citation: BMC Genomics 2014 15:1161
    Content type: Research article Published on:

  26. Avian pathogenic E. coli (APEC) are associated with extraintestinal diseases in poultry. The pstSCAB-phoU operon belongs to the Pho regulon and encodes the phosphate specific transport (Pst) system. A functional ...

    Authors: Sébastien Crépin, Martin G Lamarche, Philippe Garneau, Julie Séguin, Julie Proulx, Charles M Dozois and Josée Harel
    Citation: BMC Genomics 2008 9:568
    Content type: Research article Published on:

  27. Biclustering of gene expression data searches for local patterns of gene expression. A bicluster (or a two-way cluster) is defined as a set of genes whose expression profiles are mutually similar within a subs...

    Authors: Jiajun Gu and Jun S Liu
    Citation: BMC Genomics 2008 9(Suppl 1):S4
    Content type: Research Published on:

    This article is part of a Supplement: Volume 9 Supplement 1

  28. Despite the known importance of somatic cells for oocyte developmental competence acquisition, the overall mechanisms underlying the acquisition of full developmental competence are far from being understood, ...

    Authors: Cathy Charlier, Jérôme Montfort, Olivier Chabrol, Daphné Brisard, Thaovi Nguyen, Aurélie Le Cam, Laurent Richard-Parpaillon, François Moreews, Pierre Pontarotti, Svetlana Uzbekova, Franck Chesnel and Julien Bobe
    Citation: BMC Genomics 2012 13:560
    Content type: Research article Published on:

  29. The common sole (Solea solea) is a promising candidate for European aquaculture; however, the limited knowledge of the physiological mechanisms underlying larval development in this species has hampered the estab...

    Authors: Serena Ferraresso, Alessio Bonaldo, Luca Parma, Stefano Cinotti, Paola Massi, Luca Bargelloni and Pier Paolo Gatta
    Citation: BMC Genomics 2013 14:315
    Content type: Research article Published on:

  30. The small brown planthopper (Laodelphax striatellus) is an important agricultural pest that not only damages rice plants by sap-sucking, but also acts as a vector that transmits rice stripe virus (RSV), which can...

    Authors: Fujie Zhang, Hongyan Guo, Huajun Zheng, Tong Zhou, Yijun Zhou, Shengyue Wang, Rongxiang Fang, Wei Qian and Xiaoying Chen
    Citation: BMC Genomics 2010 11:303
    Content type: Research article Published on:

  31. Duchenne muscular dystrophy (DMD) causes progressive muscle degeneration, cardiomyopathy and respiratory failure in approximately 1/5,000 boys. Golden Retriever muscular dystrophy (GRMD) resembles DMD both cli...

    Authors: Candice Brinkmeyer-Langford, Cynthia Balog-Alvarez, James J. Cai, Brian W. Davis and Joe N. Kornegay
    Citation: BMC Genomics 2016 17:665
    Content type: Research article Published on:

  32. Sex hormones play important roles in teleost ovarian and testicular development. In zebrafish, ovarian differentiation appears to be dictated by an oocyte-derived signal via Cyp19a1a aromatase-mediated estroge...

    Authors: Stephanie Ling Jie Lee, Julia A. Horsfield, Michael A. Black, Kim Rutherford, Amanda Fisher and Neil J. Gemmell
    Citation: BMC Genomics 2017 18:557
    Content type: Research article Published on:

  33. The seminal vesicles synthesise bioactive factors that support gamete function, modulate the female reproductive tract to promote implantation, and influence developmental programming of offspring phenotype. D...

    Authors: David A. Skerrett-Byrne, Brett Nixon, Elizabeth G. Bromfield, James Breen, Natalie A. Trigg, Simone J. Stanger, Ilana R. Bernstein, Amanda L. Anderson, Tessa Lord, R. John Aitken, Shaun D. Roman, Sarah A. Robertson and John E. Schjenken
    Citation: BMC Genomics 2021 22:728
    Content type: Research Published on:

  34. In rodent models and in humans the impact of gestational diets on the offspring's phenotype was shown experimentally and epidemiologically. Adverse environmental conditions during fetal development provoke an ...

    Authors: Michael Oster, Eduard Murani, Cornelia C Metges, Siriluck Ponsuksili and Klaus Wimmers
    Citation: BMC Genomics 2012 13:93
    Content type: Research article Published on:

  35. Understanding the consequences of thermal and chemical variations in aquatic habitats is of importance in a scenario of global change. In ecology, the sex ratio is a major population demographic parameter. So ...

    Authors: Noelia Díaz and Francesc Piferrer
    Citation: BMC Genomics 2017 18:973
    Content type: Research article Published on:

  36. The improvement of feed efficiency is a key economic goal within the pig production industry. The objective of this study was to examine transcriptomic differences in both the liver and muscle of pigs divergen...

    Authors: Stafford Vigors, John V. O’Doherty, Kenneth Bryan and Torres Sweeney
    Citation: BMC Genomics 2019 20:461
    Content type: Research article Published on:

  37. Egg quality can be defined as the egg ability to be fertilized and subsequently develop into a normal embryo. Previous research has shed light on factors that can influence egg quality. Large gaps however rema...

    Authors: Caroline T. Cheung, Thao-vi Nguyen, Aurélie Le Cam, Amélie Patinote, Laurent Journot, Christelle Reynes and Julien Bobe
    Citation: BMC Genomics 2019 20:584
    Content type: Research article Published on:

  39. Banana wilt disease, caused by Fusarium oxysporum f. sp. cubense Tropical Race 4 (Foc TR4), is one of the most devastating diseases in banana (Musa spp.). Foc is a soil borne pathogen that causes rot of the roots...

    Authors: Wenbin Li, Xiaolin Wang, Chunqiang Li, Jianbo Sun, Shuxia Li and Ming Peng
    Citation: BMC Genomics 2019 20:519
    Content type: Research article Published on:

  41. Studies of temperature-induced adaptation on the basis of genomic sequence data were mainly done in extremophiles. Although the general hypothesis of an increased molecular flexibility in the cold is widely ac...

    Authors: Heidrun Sigrid Windisch, Magnus Lucassen and Stephan Frickenhaus
    Citation: BMC Genomics 2012 13:549
    Content type: Research article Published on:

  42. RT-qPCR is a sensitive and increasingly used method for gene expression quantification. To normalize RT-qPCR measurements between samples, most laboratories use endogenous reference genes as internal controls....

    Authors: Tomas Hruz, Markus Wyss, Mylene Docquier, Michael W Pfaffl, Sabine Masanetz, Lorenzo Borghi, Phebe Verbrugghe, Luba Kalaydjieva, Stefan Bleuler, Oliver Laule, Patrick Descombes, Wilhelm Gruissem and Philip Zimmermann
    Citation: BMC Genomics 2011 12:156
    Content type: Methodology article Published on:

  43. The group of > 40 cryptic whitefly species called Bemisia tabaci sensu lato are amongst the world’s worst agricultural pests and plant-virus vectors. Outbreaks of B. tabaci s.l. and the associated plant-virus dis...

    Authors: Lahcen I. Campbell, Joachim Nwezeobi, Sharon L. van Brunschot, Tadeo Kaweesi, Susan E. Seal, Rekha A. R. Swamy, Annet Namuddu, Gareth L. Maslen, Habibu Mugerwa, Irina M. Armean, Leanne Haggerty, Fergal J. Martin, Osnat Malka, Diego Santos-Garcia, Ksenia Juravel, Shai Morin…
    Citation: BMC Genomics 2023 24:408
    Content type: Research Published on:

  44. Gummy stem blight (GSB), caused by Didymella bryoniae (syn. Stagonosporopsis cucurbitacearum), produces devastating symptoms on whole plants of watermelon (Citrullus lanatus) and other cucurbits, significantly re...

    Authors: Jeong-Eui Hong, Mohammad Rashed Hossain, Hee-Jeong Jung and Ill-Sup Nou
    Citation: BMC Genomics 2022 23:632
    Content type: Research Published on:

  45. Greying of the hair is an obvious sign of human aging. In addition to age, sex- and ancestry-specific patterns of hair greying are also observed and the progression of greying may be affected by environmental ...

    Authors: Ewelina Pośpiech, Magdalena Kukla-Bartoszek, Joanna Karłowska-Pik, Piotr Zieliński, Anna Woźniak, Michał Boroń, Michał Dąbrowski, Magdalena Zubańska, Agata Jarosz, Tomasz Grzybowski, Rafał Płoski, Magdalena Spólnicka and Wojciech Branicki
    Citation: BMC Genomics 2020 21:538
    Content type: Research article Published on:

  46. Genome-wide DNA demethylation occurs in mammalian primordial germ cells (PGCs) as part of the epigenetic reprogramming important for gametogenesis and resetting the epigenetic information for totipotency. Dppa3 (...

    Authors: Keisuke Toriyama, Wan Kin Au Yeung, Azusa Inoue, Kazuki Kurimoto, Yukihiro Yabuta, Mitinori Saitou, Toshinobu Nakamura, Toru Nakano and Hiroyuki Sasaki
    Citation: BMC Genomics 2024 25:344
    Content type: Research Published on:

  47. Senescence is a fundamental biological process implicated in various pathologies, including cancer. Regarding carcinogenesis, senescence signifies, at least in its initial phases, an anti-tumor response that n...

    Authors: Eirini-Stavroula Komseli, Ioannis S. Pateras, Thorbjørn Krejsgaard, Konrad Stawiski, Sophia V. Rizou, Alexander Polyzos, Fani-Marlen Roumelioti, Maria Chiourea, Ioanna Mourkioti, Eleni Paparouna, Christos P. Zampetidis, Sentiljana Gumeni, Ioannis P. Trougakos, Dafni-Eleftheria Pefani, Eric O’Neill, Sarantis Gagos…
    Citation: BMC Genomics 2018 19:37
    Content type: Methodology article Published on:

    The Correction to this article has been published in BMC Genomics 2021 22:327

  48. SQUAMOSA promoter binding proteins (SBPs) genes encode a family of plant-specific transcription factors involved in various growth and development processes, including flower and fruit development, leaf initiatio...

    Authors: Yanhui Liu, Mohammad Aslam, Li-Ang Yao, Man Zhang, Lulu Wang, Huihuang Chen, Youmei Huang, Yuan Qin and Xiaoping Niu
    Citation: BMC Genomics 2021 22:767
    Content type: Research Published on:

  49. Sexually dimorphic phenotypes are generally associated with differential gene expression between the sexes. The study of molecular evolution and genomic location of these differentially expressed, or sex-biase...

    Authors: Eshita Sharma, Axel Künstner, Bonnie A Fraser, Gideon Zipprich, Verena A Kottler, Stefan R Henz, Detlef Weigel and Christine Dreyer
    Citation: BMC Genomics 2014 15:400
    Content type: Research article Published on:

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BMC Genomics

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