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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 69 of 128

  1. Tuber yield and starch content of the cultivated potato are complex traits of decisive importance for breeding improved varieties. Natural variation of tuber yield and starch content depends on the environment...

    Authors: Elske Maria Schönhals, Jia Ding, Enrique Ritter, Maria João Paulo, Nicolás Cara, Ekhard Tacke, Hans-Reinhard Hofferbert, Jens Lübeck, Josef Strahwald and Christiane Gebhardt
    Citation: BMC Genomics 2017 18:642
    Content type: Research article Published on:

  2. Enterococcus faecium and E. lactis are phylogenetically closely related lactic acid bacteria that are ubiquitous in nature and are known to be beneficial or pathogenic. Despite their considerable industrial and c...

    Authors: Dae Gyu Choi, Ju Hye Baek, Dong Min Han, Shehzad Abid Khan and Che Ok Jeon
    Citation: BMC Genomics 2024 25:28
    Content type: Research Published on:

  3. Carex L., a grass genus commonly known as sedges, is distributed worldwide and contributes constructively to turf management, forage production, and ecological conservation. The development of next-generation seq...

    Authors: Ke Teng, Wenjun Teng, Haifeng Wen, Yuesen Yue, Weier Guo, Juying Wu and Xifeng Fan
    Citation: BMC Genomics 2019 20:789
    Content type: Research article Published on:

  4. The burst size of a phage is important prior to phage therapy and probiotic usage. The efficiency for a phage to burst its host bacterium can result from molecular domino effects of the phage gene expressions ...

    Authors: Wangta Liu, Ying-Rong Lin, Ming-Wei Lu, Ping-Jyun Sung, Wei-Hsien Wang and Chan-Shing Lin
    Citation: BMC Genomics 2014 15:505
    Content type: Research article Published on:

  5. Grapevine (Vitis vinifera L.) is an economically important crop with a wide geographical distribution, reflecting its ability to grow successfully in a range of climates. However, many vineyards are located in re...

    Authors: Silvia Dal Santo, Alberto Palliotti, Sara Zenoni, Giovanni Battista Tornielli, Marianna Fasoli, Paola Paci, Sergio Tombesi, Tommaso Frioni, Oriana Silvestroni, Andrea Bellincontro, Claudio d’Onofrio, Fabiola Matarese, Matteo Gatti, Stefano Poni and Mario Pezzotti
    Citation: BMC Genomics 2016 17:815
    Content type: Research article Published on:

  6. GDSL esterase/lipases (GELPs) play important roles in plant growth, development, and response to biotic and abiotic stresses. Presently, an extensive and in-depth analysis of GELP family genes in cotton is still ...

    Authors: Lisheng Duan, Fei Wang, Haitao Shen, Shuangquan Xie, Xifeng Chen, Quanliang Xie, Rong Li, Aiping Cao and Hongbin Li
    Citation: BMC Genomics 2023 24:795
    Content type: Research Published on:

  8. The progress of medicine, science, technology, education, and culture improves, year by year, quality of life and life expectancy of the populace. The modern human has a chance to further improve the quality a...

    Authors: Irina V. Chadaeva, Petr M. Ponomarenko, Dmitry A. Rasskazov, Ekaterina B. Sharypova, Elena V. Kashina, Dmitry A. Zhechev, Irina A. Drachkova, Olga V. Arkova, Ludmila K. Savinkova, Mikhail P. Ponomarenko, Nikolay A. Kolchanov, Ludmila V. Osadchuk and Alexandr V. Osadchuk
    Citation: BMC Genomics 2018 19(Suppl 3):0
    Content type: Research Published on:

    This article is part of a Supplement: Volume 19 Supplement 3

  9. 'Systems-wide' approaches such as microarray RNA-profiling are ideally suited to the study of the complex overlapping responses of plants to biotic and abiotic stresses. However, commercial microarrays are onl...

    Authors: Mark W Davey, Neil S Graham, Bartel Vanholme, Rony Swennen, Sean T May and Johan Keulemans
    Citation: BMC Genomics 2009 10:436
    Content type: Research article Published on:

  10. Pathway enrichment analysis is a useful tool to study biology and biomedicine, due to its functional screening on well-defined biological procedures rather than separate molecules. The measurement of malfuncti...

    Authors: Xiangtian Yu, Tao Zeng and Guojun Li
    Citation: BMC Genomics 2015 16:918
    Content type: Methodology article Published on:

  11. In the event of an improvised nuclear device detonation, the prompt radiation exposure would consist of photons plus a neutron component that would contribute to the total dose. As neutrons cause more complex ...

    Authors: Constantinos G. Broustas, Yanping Xu, Andrew D. Harken, Guy Garty and Sally A. Amundson
    Citation: BMC Genomics 2017 18:2
    Content type: Research Article Published on:

  12. Perennial ryegrass (Lolium perenne L.) is one of the most important forage and turf grass species of temperate regions worldwide. Its mitochondrial genome is inherited maternally and contains genes that can influ...

    Authors: Md Shofiqul Islam, Bruno Studer, Stephen L Byrne, Jacqueline D Farrell, Frank Panitz, Christian Bendixen, Ian Max Møller and Torben Asp
    Citation: BMC Genomics 2013 14:202
    Content type: Research article Published on:

  13. Whereas 40 % to 70 % of papillary thyroid carcinomas (PTCs) are characterized by a BRAF mutation (BRAFmut), unified biomarkers for the genetically heterogeneous group of BRAF wild type (BRAFwt) PTCs are not estab...

    Authors: Hans-Juergen Schulten, Reem Alotibi, Alaa Al-Ahmadi, Manar Ata, Sajjad Karim, Etimad Huwait, Mamdooh Gari, Khalid Al-Ghamdi, Faisal Al-Mashat, Osman Abdel Al-Hamour, Mohammad Hussain Al-Qahtani and Jaudah Al-Maghrabi
    Citation: BMC Genomics 2015 16(Suppl 1):S6
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 1

  14. Despite evidence for adaptive changes in both gene expression and non-protein-coding, putatively regulatory regions of the genome during human evolution, the relationship between gene expression and adaptive c...

    Authors: Courtney C. Babbitt, Ralph Haygood, William J. Nielsen and Gregory A. Wray
    Citation: BMC Genomics 2017 18:435
    Content type: Research article Published on:

  15. Upstream open reading frames (uORFs) are elements found in the 5'-region of an mRNA transcript, capable of regulating protein production of the largest, or major ORF (mORF), and impacting organismal developmen...

    Authors: Celine A Hayden and Giovanni Bosco
    Citation: BMC Genomics 2008 9:61
    Content type: Research article Published on:

  16. Transcriptome variability is due to genetic and environmental causes, much like any other complex phenotype. Ascertaining the transcriptome differences between individuals is an important step to understand ho...

    Authors: Miguel Pérez-Enciso, André LJ Ferraz, Ana Ojeda and Manel López-Béjar
    Citation: BMC Genomics 2009 10:89
    Content type: Research article Published on:

  17. Largely because of their direct, negative impacts on human health, the venoms of front-fanged snakes of the families Viperidae and Elapidae have been extensively characterized proteomically, transcriptomically...

    Authors: James J McGivern, Kenneth P Wray, Mark J Margres, Michelle E Couch, Stephen P Mackessy and Darin R Rokyta
    Citation: BMC Genomics 2014 15:1061
    Content type: Research article Published on:

  18. The use of gene expression profiling in both clinical and laboratory settings would be enhanced by better characterization of variance due to individual, environmental, and technical factors. Meta-analysis of ...

    Authors: Michael J Boedigheimer, Russell D Wolfinger, Michael B Bass, Pierre R Bushel, Jeff W Chou, Matthew Cooper, J Christopher Corton, Jennifer Fostel, Susan Hester, Janice S Lee, Fenglong Liu, Jie Liu, Hui-Rong Qian, John Quackenbush, Syril Pettit and Karol L Thompson
    Citation: BMC Genomics 2008 9:285
    Content type: Research article Published on:

  19. Chickpea is prone to many abiotic stresses such as heat, drought, salinity, etc. which cause severe loss in yield. Tolerance towards these stresses is quantitative in nature and many studies have been done to ...

    Authors: Sourav Panigrahi, Upendra Kumar, Sonu Swami, Yogita Singh, Priyanka Balyan, Krishna Pal singh, Om Parkash Dhankher, Rajeev K Varshney, Manish Roorkiwal, Khaled MA Amiri and Reyazul Rouf Mir
    Citation: BMC Genomics 2024 25:439
    Content type: Research Published on:

  20. Streptococcus agalactiae (GBS) is a major pathogen of Nile tilapia, a global commodity of the aquaculture sector. The aims of this study were to evaluate protein expression in the main genotypes of GBS isolated f...

    Authors: Guilherme Campos Tavares, Felipe Luiz Pereira, Gustavo Morais Barony, Cristiana Perdigão Rezende, Wanderson Marques da Silva, Gustavo Henrique Martins Ferreira de Souza, Thiago Verano-Braga, Vasco Ariston de Carvalho Azevedo, Carlos Augusto Gomes Leal and Henrique César Pereira Figueiredo
    Citation: BMC Genomics 2019 20:11
    Content type: Research article Published on:

  21. Water spinach (Ipomoea aquatica) is an important heat-resistant leafy vegetable that can survive under long-time heat stress condition. However, the physiological characteristics and molecular changes in its resp...

    Authors: Rongfang Guo, Xingru Wang, Xiaoyun Han, Xiaodong Chen and Gefu Wang-Pruski
    Citation: BMC Genomics 2020 21:533
    Content type: Research article Published on:

  22. Recently, measurement of RNA at single cell resolution has yielded surprising insights. Methods for single-cell RNA sequencing (scRNA-seq) have received considerable attention, but the broad reliability of sin...

    Authors: Hannah R. Dueck, Rizi Ai, Adrian Camarena, Bo Ding, Reymundo Dominguez, Oleg V. Evgrafov, Jian-Bing Fan, Stephen A. Fisher, Jennifer S. Herstein, Tae Kyung Kim, Jae Mun (Hugo) Kim, Ming-Yi Lin, Rui Liu, William J. Mack, Sean McGroty, Joseph D. Nguyen…
    Citation: BMC Genomics 2016 17:966
    Content type: Research article Published on:

  23. Lipopolysaccharide (LPS) endotoxin stimulates pro-inflammatory pathways and is a key player in the pathological mechanisms involved in the development of endometritis. This study aimed to investigate LPS-induc...

    Authors: Naveed Jhamat, Adnan Niazi, Yongzhi Guo, Metasu Chanrot, Elena Ivanova, Gavin Kelsey, Erik Bongcam-Rudloff, Göran Andersson and Patrice Humblot
    Citation: BMC Genomics 2020 21:385
    Content type: Research article Published on:

  24. The major Gram-positive coccoid pathogens cause similar invasive diseases and show high rates of antimicrobial resistance. Uncharacterised proteins shared by these organisms may be involved in virulence or be ...

    Authors: Antonio J Martín-Galiano, José Yuste, María I Cercenado and Adela G de la Campa
    Citation: BMC Genomics 2014 15:652
    Content type: Research article Published on:

  25. Among repetitive genomic sequence, the class of tri-nucleotide repeats has received much attention due to their association with human diseases. Tri-nucleotide repeat diseases are caused by excessive sequence ...

    Authors: Kai Willadsen, Minh Duc Cao, Janet Wiles, Sureshkumar Balasubramanian and Mikael Bodén
    Citation: BMC Genomics 2013 14:76
    Content type: Research article Published on:

  26. The TRA/TRD locus contains the genes for V(D)J somatic rearrangement of TRA and TRD chains expressed by αβ and γδ T cells respectively. Previous studies have demonstrated that the bovine TRA/TRD locus contains...

    Authors: Timothy K Connelley, Kathryn Degnan, Cassandra W Longhi and W Ivan Morrison
    Citation: BMC Genomics 2014 15:994
    Content type: Research article Published on:

  27. Cluster thinning is an agronomic practice in which a proportion of berry clusters are removed from the vine to increase the source/sink ratio and improve the quality of the remaining berries. Until now no tran...

    Authors: Chiara Pastore, Sara Zenoni, Giovanni Battista Tornielli, Gianluca Allegro, Silvia Dal Santo, Gabriele Valentini, Cesare Intrieri, Mario Pezzotti and Ilaria Filippetti
    Citation: BMC Genomics 2011 12:631
    Content type: Research article Published on:

  28. Excessive fat deposition is one of the largest problems faced by salmon aquaculture industries, leading to production losses due to high volume of adipose tissue offal. In addition, increased lipid accumulatio...

    Authors: Marijana Todorčević, Stanko Škugor, Aleksei Krasnov and Bente Ruyter
    Citation: BMC Genomics 2010 11:39
    Content type: Research article Published on:

  29. Jatropha curcas, a tropical shrub, is a promising biofuel crop, which produces seeds with high content of oil and protein. To better understand the maturation process of J. curcas seeds and to improve its agronom...

    Authors: Fatemeh Maghuly, Tamás Deák, Klemens Vierlinger, Stephan Pabinger, Hakim Tafer and Margit Laimer
    Citation: BMC Genomics 2020 21:290
    Content type: Research article Published on:

  32. The general structure and action of all eukaryotic and archaeal RNA polymerases machinery have an astonishing similarity despite the diversity of core promoter sequences in different species. The goal of our w...

    Authors: Irina A. Il’icheva, Mingian V. Khodikov, Maria S. Poptsova, Dmitry Yu. Nechipurenko, Yury D. Nechipurenko and Sergei L. Grokhovsky
    Citation: BMC Genomics 2016 17:973
    Content type: Research article Published on:

  33. Studying plasticity in gene expression in natural systems is crucial, for predicting and managing the effects of climate change on plant species. To understand the contribution of gene expression level variati...

    Authors: Priya Darshini Gurung, Atul Kumar Upadhyay, Pardeep Kumar Bhardwaj, Ramanathan Sowdhamini and Uma Ramakrishnan
    Citation: BMC Genomics 2019 20:989
    Content type: Research article Published on:

  34. The predominant model for regulation of gene expression through DNA methylation is an inverse association in which increased methylation results in decreased gene expression levels. However, recent studies sug...

    Authors: Kristel R van Eijk, Simone de Jong, Marco PM Boks, Terry Langeveld, Fabrice Colas, Jan H Veldink, Carolien GF de Kovel, Esther Janson, Eric Strengman, Peter Langfelder, René S Kahn, Leonard H van den Berg, Steve Horvath and Roel A Ophoff
    Citation: BMC Genomics 2012 13:636
    Content type: Research article Published on:

  35. Though intensive genetic selection has led to extraordinary advances in growth rate and feed efficiency in production of meat-type chickens, endocrine processes controlling these traits are still poorly unders...

    Authors: Laura E. Ellestad, Larry A. Cogburn, Jean Simon, Elisabeth Le Bihan-Duval, Samuel E. Aggrey, Mardi S. Byerly, Michel J. Duclos and Tom E. Porter
    Citation: BMC Genomics 2019 20:316
    Content type: Research article Published on:

  36. Eukaryotic translation initiation factor 4G (eIF4G) is thought to influence the translational efficiencies of cellular mRNAs by its roles in forming an eIF4F-mRNA-PABP mRNP that is competent for attachment of ...

    Authors: Eun-Hee Park, Fan Zhang, Jonas Warringer, Per Sunnerhagen and Alan G Hinnebusch
    Citation: BMC Genomics 2011 12:68
    Content type: Research article Published on:

  37. Intramuscular fat (IMF) content is positively correlated with aspects of pork palatability, including flavour, juiciness and overall acceptability. The ratio of energy to protein in the finishing diet of growi...

    Authors: Ruth M Hamill, Ozlem Aslan, Anne M Mullen, John V O’Doherty, Jean McBryan, Dermot G Morris and Torres Sweeney
    Citation: BMC Genomics 2013 14:453
    Content type: Research article Published on:

  38. Cucurbita pepo is a cucurbit with growing economic importance worldwide. Zucchini morphotype is the most important within this highly variable species. Recently, transcriptome and Simp...

    Authors: Javier Montero-Pau, José Blanca, Cristina Esteras, Eva Ma. Martínez-Pérez, Pedro Gómez, Antonio J. Monforte, Joaquín Cañizares and Belén Picó
    Citation: BMC Genomics 2017 18:94
    Content type: Research Article Published on:

  39. Association mapping studies of quantitative trait loci (QTL) for canine hip dysplasia (CHD) can contribute to the understanding of the genetic background of this common and debilitating disease and might contr...

    Authors: Shizhi Wang, Erling Strandberg, Per Arvelius, Dylan N. Clements, Pamela Wiener and Juliane Friedrich
    Citation: BMC Genomics 2021 22:636
    Content type: Research Published on:

  40. Feather pecking (FP) in laying hens reduces animal welfare and leads to economic losses for the layer industry. FP is considered a heritable condition that is influenced by dysregulation of neurotransmitter ho...

    Authors: Clemens Falker-Gieske, Andrea Mott, Siegfried Preuß, Sören Franzenburg, Werner Bessei, Jörn Bennewitz and Jens Tetens
    Citation: BMC Genomics 2020 21:595
    Content type: Research article Published on:

  41. Sugarcane smut is a fungal disease caused by Sporisorium scitamineum. Cultivation of smut-resistant sugarcane varieties is the most effective way to control this disease. The interaction between sugarcane and S. ...

    Authors: Yachun Su, Xinhuan Xiao, Hui Ling, Ning Huang, Feng Liu, Weihua Su, Yuye Zhang, Liping Xu, Khushi Muhammad and Youxiong Que
    Citation: BMC Genomics 2019 20:57
    Content type: Research article Published on:

  42. NR2E1 (Tlx) is an orphan nuclear receptor that regulates the maintenance and self-renewal of neural stem cells, and promotes tumourigenesis. Nr2e1-null mice exhibit reduced cortical and limbic structures and pron...

    Authors: Ximena Corso-Díaz, Charles N. de Leeuw, Vivian Alonso, Diana Melchers, Bibiana K. Y. Wong, René Houtman and Elizabeth M. Simpson
    Citation: BMC Genomics 2016 17:832
    Content type: Research article Published on:

  43. Heterocellular hereditary persistence of fetal hemoglobin (HPFH) is a common multifactorial trait characterized by a modest increase of fetal hemoglobin levels in adults. We previously localized a Quantitative...

    Authors: James Close, Laurence Game, Barnaby Clark, Jean Bergounioux, Ageliki Gerovassili and Swee Lay Thein
    Citation: BMC Genomics 2004 5:33
    Content type: Research article Published on:

  44. Since the development of in vitro embryo production in cattle, different supplements have been added to culture media to support embryo development, with serum being the most popular. However, the addition of ...

    Authors: Sonia Heras, Dieter I. M. De Coninck, Mario Van Poucke, Karen Goossens, Osvaldo Bogado Pascottini, Filip Van Nieuwerburgh, Dieter Deforce, Petra De Sutter, Jo L. M. R. Leroy, Alfonso Gutierrez-Adan, Luc Peelman and Ann Van Soom
    Citation: BMC Genomics 2016 17:72
    Content type: Research article Published on:

  46. Hookworms, infecting over one billion people, are the mostly closely related major human parasites to the model nematode Caenorhabditis elegans. Applying genomics techniques to these species, we analyzed 3,840 an...

    Authors: Makedonka Mitreva, James P McCarter, Prema Arasu, John Hawdon, John Martin, Mike Dante, Todd Wylie, Jian Xu, Jason E Stajich, Wadim Kapulkin, Sandra W Clifton, Robert H Waterston and Richard K Wilson
    Citation: BMC Genomics 2005 6:58
    Content type: Research article Published on:

  47. Neurons display a highly polarized architecture. Their ability to modify their features under intracellular and extracellular stimuli, known as synaptic plasticity, is a key component of the neurochemical basi...

    Authors: Chantal Francis, Shreedhar Natarajan, Miler T Lee, Mugdha Khaladkar, Peter T Buckley, Jai-Yoon Sul, James Eberwine and Junhyong Kim
    Citation: BMC Genomics 2014 15:883
    Content type: Research article Published on:

  49. After a short gestation, marsupials give birth to immature neonates with lungs that are not fully developed and in early life the neonate partially relies on gas exchange through the skin. Therefore, significa...

    Authors: Vengamanaidu Modepalli, Amit Kumar, Julie A Sharp, Norman R Saunders, Kevin R Nicholas and Christophe Lefèvre
    Citation: BMC Genomics 2018 19:732
    Content type: Research article Published on:

  50. At sexual maturity, the liver of laying hens undergoes many metabolic changes to support vitellogenesis. In published transcriptomic approaches, hundreds of genes were reported to be overexpressed in laying he...

    Authors: Audrey Gloux, Michel J. Duclos, Aurélien Brionne, Marie Bourin, Yves Nys and Sophie Réhault-Godbert
    Citation: BMC Genomics 2019 20:821
    Content type: Research article Published on:

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BMC Genomics

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