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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Polyploid species often originate recurrently. While this is well known, there is little information on the extent to which distinct allotetraploid species formed from the same parent species differ in gene ex...

    Authors: Duo Chen, Peng-Cheng Yan and Yan-Ping Guo
    Citation: BMC Genomics 2021 22:264
    Content type: Research article Published on:

  2. Vibrio parahaemolyticus causes serious seafood-borne gastroenteritis and death in humans. Raw seafood is often subjected to post-harvest processing and low-temperature storage. To date...

    Authors: Chunhua Zhu, Boyi Sun, Taigang Liu, Huajun Zheng, Wenyi Gu, Wei He, Fengjiao Sun, Yaping Wang, Meicheng Yang, Weicheng Bei, Xu Peng, Qunxin She, Lu Xie and Lanming Chen
    Citation: BMC Genomics 2017 18:436
    Content type: Research article Published on:

  3. B chromosomes (Bs) are extra elements observed in diverse eukaryotes, including animals, plants and fungi. Although Bs were first identified a century ago and have been studied in hundreds of species, their bi...

    Authors: Jordana Inácio Nascimento-Oliveira, Bruno Evaristo Almeida Fantinatti, Ivan Rodrigo Wolf, Adauto Lima Cardoso, Erica Ramos, Nathalie Rieder, Rogerio de Oliveira and Cesar Martins
    Citation: BMC Genomics 2021 22:344
    Content type: Research Published on:

  4. Clostridium acetobutylicum, a gram-positive and spore-forming anaerobe, is a major strain for the fermentative production of acetone, butanol and ethanol. But a previously isolated hyper-butanol producing strain

    Authors: Shiyuan Hu, Huajun Zheng, Yang Gu, Jingbo Zhao, Weiwen Zhang, Yunliu Yang, Shengyue Wang, Guoping Zhao, Sheng Yang and Weihong Jiang
    Citation: BMC Genomics 2011 12:93
    Content type: Research article Published on:

  6. Cytochrome P450 (P450) is a functionally diverse and multifamily class of enzymes which catalyses vast variety of biochemical reactions. P450 genes play regulatory role in growth, development and secondary met...

    Authors: A. P. Vasav and V. T. Barvkar
    Citation: BMC Genomics 2019 20:116
    Content type: Research article Published on:

  7. Powdery mildew (PM) is a major fungal disease of thousands of plant species, including many cultivated Rosaceae. PM pathogenesis is associated with up-regulation of MLO genes during early stages of infection, cau...

    Authors: Stefano Pessina, Stefano Pavan, Domenico Catalano, Alessandra Gallotta, Richard GF Visser, Yuling Bai, Mickael Malnoy and Henk J Schouten
    Citation: BMC Genomics 2014 15:618
    Content type: Research article Published on:

  9. Activation of PPARs has been reported to inhibit the proliferation of malignant cells from different lineages. They are involved in transcription regulation of genes upon activation by a ligand. The binding of...

    Authors: Gireedhar Venkatachalam, Alan Prem Kumar, Loo Ser Yue, Shazib Pervaiz, Marie Veronique Clement and Meena Kishore Sakharkar
    Citation: BMC Genomics 2009 10(Suppl 3):S5
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 10 Supplement 3

  10. This study assesses the whole-genome gene expression changes in a panel of primary human cell lines in response to DNA damage mediated by decay of DNA-incorporated radioiodinated thymidine analog 5-[125I]iodo-2'-...

    Authors: Mykyta V Sokolov, Ronald D Neumann and Igor G Panyutin
    Citation: BMC Genomics 2007 8:192
    Content type: Research article Published on:

  11. Long noncoding RNAs (lncRNAs) are a diverse class of RNAs that are critical for gene regulation, DNA repair, and splicing, and have been implicated in development, stress response, and cancer. However, the fun...

    Authors: Rebecca A. MacPherson, Vijay Shankar, Lakshmi T. Sunkara, Rachel C. Hannah, Marion R. Campbell III, Robert R. H. Anholt and Trudy F. C. Mackay
    Citation: BMC Genomics 2022 23:781
    Content type: Research article Published on:

  13. The broad host range pathogen Sclerotinia sclerotiorum infects over 400 plant species and causes substantial yield losses in crops worldwide. Secondary metabolites are known to play important roles in the virulen...

    Authors: Carolyn Graham-Taylor, Lars G. Kamphuis and Mark C. Derbyshire
    Citation: BMC Genomics 2020 21:7
    Content type: Research article Published on:

  14. The endothelial PAS domain protein 1 (EPAS1) activates genes that are involved in erythropoiesis and angiogenesis, thus favoring a better delivery of oxygen to the tissues and is a plausible candidate to influ...

    Authors: Sarah Voisin, Pawel Cieszczyk, Vladimir P Pushkarev, Dmitry A Dyatlov, Boris F Vashlyayev, Vladimir A Shumaylov, Agnieszka Maciejewska-Karlowska, Marek Sawczuk, Lidia Skuza, Zbigniew Jastrzebski, David J Bishop and Nir Eynon
    Citation: BMC Genomics 2014 15:382
    Content type: Research article Published on:

  15. Polycystic ovary syndrome (PCOS) is a complex multifactorial disorder with a substantial genetic component. However, the clinical manifestations of PCOS are heterogeneous with notable differences between lean ...

    Authors: Kharis Burns, Benjamin H. Mullin, Loes M. E. Moolhuijsen, Triin Laisk, Jaakko S. Tyrmi, Jinrui Cui, Ky’Era V. Actkins, Yvonne V. Louwers, Lea K. Davis, Frank Dudbridge, Ricardo Azziz, Mark O. Goodarzi, Hannele Laivuori, Reedik Mägi, Jenny A. Visser, Joop S. E. Laven…
    Citation: BMC Genomics 2024 25:208
    Content type: Research Published on:

  16. Previous studies demonstrate the usefulness of using multiple tools and methods for improving the accuracy of motif detection. Over the past years, numerous motif discovery pipelines have been developed. Howev...

    Authors: Ngoc Tam L. Tran and Chun-Hsi Huang
    Citation: BMC Genomics 2018 19:755
    Content type: Software Published on:

  18. Schistosoma mansoni is a blood helminth parasite that causes schistosomiasis, a disease that affects 200 million people in the world. Many orthologs of known mammalian genes have been discovered in this parasite ...

    Authors: Thiago M Venancio, Ricardo DeMarco, Giulliana T Almeida, Katia C Oliveira, João C Setubal and Sergio Verjovski-Almeida
    Citation: BMC Genomics 2007 8:407
    Content type: Research article Published on:

  19. MiRNAs regulate multiple genes at the post-transcriptional level and therefore play an important role in many biological processes. It has been suggested that miRNA exported outside the cells contribute to int...

    Authors: Alicja Pacholewska, Núria Mach, Xavier Mata, Anne Vaiman, Laurent Schibler, Eric Barrey and Vincent Gerber
    Citation: BMC Genomics 2016 17:831
    Content type: Research article Published on:

  20. Latimeria menadoensis is a coelacanth species first identified in 1997 in Indonesia, at 10,000 Km of distance from its African congener. To date, only six specimens have been caught and just a very limited molecu...

    Authors: Alberto Pallavicini, Adriana Canapa, Marco Barucca, Jessica Alfőldi, Maria Assunta Biscotti, Francesco Buonocore, Gianluca De Moro, Federica Di Palma, Anna Maria Fausto, Mariko Forconi, Marco Gerdol, Daisy Monica Makapedua, Jason Turner-Meier, Ettore Olmo and Giuseppe Scapigliati
    Citation: BMC Genomics 2013 14:538
    Content type: Research article Published on:

  21. As the most important yield component in rapeseed (Brassica napus L.), pod number is determined by a series of successive growth and development processes. Pod number shows extensive variation in rapeseed natural...

    Authors: Jiang Ye, Yuhua Yang, Bo Chen, Jiaqin Shi, Meizhong Luo, Jiepeng Zhan, Xinfa Wang, Guihua Liu and Hanzhong Wang
    Citation: BMC Genomics 2017 18:71
    Content type: Research Article Published on:

  22. MicroRNAs (miRNAs), short ~21-nucleotide RNA molecules, play an important role in post-transcriptional regulation of gene expression. The number of known miRNA hairpins registered in the miRBase database is ra...

    Authors: Ate van der Burgt, Mark WJE Fiers, Jan-Peter Nap and Roeland CHJ van Ham
    Citation: BMC Genomics 2009 10:204
    Content type: Research article Published on:

  23. The gene expression profiles of most human tissues have been studied by determining the transcriptome of whole tissue homogenates. Due to the solid composition of tissues it is difficult to study the transcrip...

    Authors: Asa J Oudes, Dave S Campbell, Carrie M Sorensen, Laura S Walashek, Lawrence D True and Alvin Y Liu
    Citation: BMC Genomics 2006 7:92
    Content type: Research article Published on:

  24. Brown planthopper (BPH, Nilaparvata lugens Stål), is the most destructive phloem-feeding insect pest of rice (Oryza sativa). The BPH-resistance gene BPH15 has been proved to be effective in controlling the pest a...

    Authors: Wentang Lv, Ba Du, Xinxin Shangguan, Yan Zhao, Yufang Pan, Lili Zhu, Yuqing He and Guangcun He
    Citation: BMC Genomics 2014 15:674
    Content type: Research article Published on:

  25. Multiple myeloma (MM) is a malignant proliferation of plasma B cells. Based on recurrent aneuploidy such as copy number alterations (CNAs), myeloma is divided into two subtypes with different CNA patterns and ...

    Authors: Mehmet K Samur, Parantu K Shah, Xujun Wang, Stéphane Minvielle, Florence Magrangeas, Hervé Avet-Loiseau, Nikhil C Munshi and Cheng Li
    Citation: BMC Genomics 2013 14:672
    Content type: Research article Published on:

  26. Insights into the genetic capacities of species to adapt to future climate change can be gained by using comparative genomic and transcriptomic data to reconstruct the genetic changes associated with such adap...

    Authors: Rahul V. Rane, Stephen L. Pearce, Fang Li, Chris Coppin, Michele Schiffer, Jennifer Shirriffs, Carla M. Sgrò, Philippa C. Griffin, Goujie Zhang, Siu F. Lee, Ary A. Hoffmann and John G. Oakeshott
    Citation: BMC Genomics 2019 20:52
    Content type: Research article Published on:

  27. Extreme acidic environments are characterized by their high metal content and lack of nutrients (oligotrophy). Macroscopic biofilms and filaments usually grow on the water-air interface or under the stream att...

    Authors: Mercedes Moreno-Paz, Manuel J Gómez, Aida Arcas and Víctor Parro
    Citation: BMC Genomics 2010 11:404
    Content type: Research article Published on:

  28. Despite the relevance of the eukaryotic endoplasmic reticulum (ER)-stress response as an integrator of multiple stress signals into an adaptive response, knowledge about these ER-mediated cytoprotective pathwa...

    Authors: Priscila Alves Silva, José Cleydson F. Silva, Hanna DN Caetano, Joao Paulo B. Machado, Giselle C. Mendes, Pedro AB Reis, Otavio JB Brustolini, Maximiller Dal-Bianco and Elizabeth PB Fontes
    Citation: BMC Genomics 2015 16:783
    Content type: Research article Published on:

  29. Corals represent symbiotic meta-organisms that require harmonization among the coral animal, photosynthetic zooxanthellae and associated microbes to survive environmental stresses. We investigated integrated-r...

    Authors: Kurt A Gust, Fares Z Najar, Tanwir Habib, Guilherme R Lotufo, Alan M Piggot, Bruce W Fouke, Jennifer G Laird, Mitchell S Wilbanks, Arun Rawat, Karl J Indest, Bruce A Roe and Edward J Perkins
    Citation: BMC Genomics 2014 15:591
    Content type: Research article Published on:

  30. Studying functional divergences between paralogs that originated from genome duplication is a significant topic in investigating molecular evolution. Genes that exhibit basal level cyclic expression patterns i...

    Authors: Yuan Lu, Mikki Boswell, William Boswell, Raquel Ybanez Salinas, Markita Savage, Jose Reyes, Sean Walter, Rebecca Marks, Trevor Gonzalez, Geraldo Medrano, Wesley C. Warren, Manfred Schartl and Ronald B. Walter
    Citation: BMC Genomics 2020 21:787
    Content type: Research article Published on:

  31. Repetitive elements are now known to have relevant cellular functions, including self-complementary sequences that form double stranded (ds) RNA. There are numerous pathways that determine the fate of endogeno...

    Authors: Wilson H. McKerrow, Yiannis A. Savva, Ali Rezaei, Robert A. Reenan and Charles E. Lawrence
    Citation: BMC Genomics 2017 18:522
    Content type: Methodology Article Published on:

  32. Cardiomyopathy syndrome (CMS) is a severe disease of Atlantic salmon (Salmo salar L.) associated with significant economic losses in the aquaculture industry. CMS is diagnosed with a severe inflammation and degra...

    Authors: Gerrit Timmerhaus, Aleksei Krasnov, Harald Takle, Sergey Afanasyev, Pål Nilsen, Marit Rode and Sven Martin Jørgensen
    Citation: BMC Genomics 2012 13:205
    Content type: Research article Published on:

  33. The active form of Vitamin D, 1,25-dihydroxyvitamin D3 (1,25D), has strong anti-proliferative effects, yet the molecular mechanisms underneath this effect remain unclear. In contrast, the molecular mechanism of 1...

    Authors: José L Costa, Paul P Eijk, Mark A van de Wiel, Derk ten Berge, Fernando Schmitt, Carmen J Narvaez, JoEllen Welsh and Bauke Ylstra
    Citation: BMC Genomics 2009 10:499
    Content type: Research article Published on:

  35. Carotenoids contribute significantly to animal body coloration, including the spectacular color pattern diversity among fishes. Fish, as other animals, derive carotenoids from their diet. Following uptake, tra...

    Authors: Ehsan Pashay Ahi, Laurène A. Lecaudey, Angelika Ziegelbecker, Oliver Steiner, Ronald Glabonjat, Walter Goessler, Victoria Hois, Carina Wagner, Achim Lass and Kristina M. Sefc
    Citation: BMC Genomics 2020 21:54
    Content type: Research article Published on:

  36. In invertebrates, genes belonging to dynamically regulated functional categories appear to be less methylated than “housekeeping” genes, suggesting that DNA methylation may modulate gene expression plasticity....

    Authors: Groves B Dixon, Line K Bay and Mikhail V Matz
    Citation: BMC Genomics 2014 15:1109
    Content type: Research article Published on:

  37. Mastitis is the most prevalent disease in dairy sheep with major economic, hygienic and welfare implications. The disease persists in all dairy sheep production systems despite the implementation of improved m...

    Authors: G. Banos, G. Bramis, S. J. Bush, E. L. Clark, M. E.B. McCulloch, J. Smith, G. Schulze, G. Arsenos, D. A. Hume and A. Psifidi
    Citation: BMC Genomics 2017 18:624
    Content type: Research article Published on:

  38. Parthenocarpy is an excellent agronomic trait that enables crops to set fruit in the absence of pollination and fertilization, and therefore to produce seedless fruit. Although parthenocarpy is widely recogniz...

    Authors: Ji Li, Jian Xu, Qin-Wei Guo, Zhe Wu, Ting Zhang, Kai-Jing Zhang, Chun-yan Cheng, Pin-yu Zhu, Qun-Feng Lou and Jin-Feng Chen
    Citation: BMC Genomics 2017 18:896
    Content type: Research article Published on:

  39. Aegilops crassa cytoplasm is an important source for investigating cytoplasmic male sterility (CMS). Moreover, the stamens of line C303A exhibit a high degree of pistillody, turning almost white. However, the mol...

    Authors: Qi Liu, Zihan Liu, Wei Li and Xiyue Song
    Citation: BMC Genomics 2020 21:124
    Content type: Research article Published on:

  40. The onset of antibiotics production in Streptomyces species is co-ordinated with differentiation events. An understanding of the genetic circuits that regulate these coupled biological phenomena is essential to d...

    Authors: Marlene Castro-Melchor, Salim Charaniya, George Karypis, Eriko Takano and Wei-Shou Hu
    Citation: BMC Genomics 2010 11:578
    Content type: Research article Published on:

  41. In mammalian meiotic prophase, homologous chromosome recognition is aided by formation and repair of programmed DNA double-strand breaks (DSBs). Subsequently, stable associations form through homologous chromo...

    Authors: Federica Federici, Eskeatnaf Mulugeta, Sam Schoenmakers, Evelyne Wassenaar, Jos W Hoogerbrugge, Godfried W van der Heijden, Wiggert A van Cappellen, Johan A Slotman, Wilfred FJ van IJcken, Joop SE Laven, J Anton Grootegoed and Willy M Baarends
    Citation: BMC Genomics 2015 16:291
    Content type: Research article Published on:

  42. Aggression is a near-universal behaviour with substantial influence on and implications for human and animal social systems. The neurophysiological basis of aggression is, however, poorly understood in all spe...

    Authors: Amy L Filby, Gregory C Paull, Tamsin FA Hickmore and Charles R Tyler
    Citation: BMC Genomics 2010 11:498
    Content type: Research article Published on:

  43. Homologous recombination is the key process that generates genetic diversity and drives evolution. SPO11 protein triggers recombination by introducing DNA double stranded breaks at discreet areas of the genome...

    Authors: Fatima Smagulova, Kevin Brick, Yongmei Pu, Uttara Sengupta, R Daniel Camerini-Otero and Galina V Petukhova
    Citation: BMC Genomics 2013 14:493
    Content type: Research article Published on:

  44. Divergent selection for meat and egg production in poultry has resulted in strains of birds differing widely in traits related to these products. Modern strains of meat birds can reach live weights of 2 kg in ...

    Authors: Nicky-Lee Willson, Rebecca E. A. Forder, Rick Tearle, John L. Williams, Robert J. Hughes, Greg S. Nattrass and Philip I. Hynd
    Citation: BMC Genomics 2018 19:309
    Content type: Research article Published on:

  45. Teleosts display a spectacular diversity of craniofacial adaptations that often mediates ecological specializations. A considerable amount of research has revealed molecular players underlying skeletal craniof...

    Authors: Laurène Alicia Lecaudey, Pooja Singh, Christian Sturmbauer, Anna Duenser, Wolfgang Gessl and Ehsan Pashay Ahi
    Citation: BMC Genomics 2021 22:506
    Content type: Research Published on:

  46. Manila clam (Ruditapes philippinarum) is a worldwide commercially important marine bivalve species. In recent years, however, microbial diseases caused high economic losses and have received increasing attention....

    Authors: Kunyin Jiang, Hongtao Nie, Dongdong Li and Xiwu Yan
    Citation: BMC Genomics 2020 21:531
    Content type: Research article Published on:

  47. As one of the important traits in pig production, meat quality has important research significance and value. Intramuscular fat (IMF) content is one of the most important factors affecting pork quality. Many e...

    Authors: Yingke Liu, Yilin Wei, Yaqing Dou, Chenlei Li, Chenglei Song, Zhe Zhang, Kunlong Qi, Xinjian Li, Ruimin Qiao, Kejun Wang, Xiuling Li, Feng Yang and Xuelei Han
    Citation: BMC Genomics 2023 24:293
    Content type: Research Published on:

  48. Iron homeostasis of Shewanella oneidensis, a γ-proteobacterium possessing high iron content, is regulated by a global transcription factor Fur. However, knowledge is incomplete about other biological pathways tha...

    Authors: Yunfeng Yang, Daniel P Harris, Feng Luo, Wenlu Xiong, Marcin Joachimiak, Liyou Wu, Paramvir Dehal, Janet Jacobsen, Zamin Yang, Anthony V Palumbo, Adam P Arkin and Jizhong Zhou
    Citation: BMC Genomics 2009 10:131
    Content type: Research article Published on:

  49. Myogenesis is initiated by myoblast differentiation and fusion to form myotubes and muscle fibres. A population of myoblasts, known as satellite cells, is responsible for post-natal growth of muscle and for it...

    Authors: Vincent Grassot, Anne Da Silva, James Saliba, Abderrahman Maftah, Fabrice Dupuy and Jean-Michel Petit
    Citation: BMC Genomics 2014 15:621
    Content type: Research article Published on:

  50. Alteromonas macleodii is a ubiquitous gammaproteobacterium shown to play a biogeochemical role in marine environments. Two A. macleodii strains (AltDE and AltDE1) isolated from the same sample (i.e., the same pla...

    Authors: Nikole E Kimes, Mario López-Pérez, Eva Ausó, Rohit Ghai and Francisco Rodriguez-Valera
    Citation: BMC Genomics 2014 15:938
    Content type: Research article Published on:

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BMC Genomics

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