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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Fruit peel colour is an important agronomic trait for fruit quality. Cytosine methylation plays an important role in gene regulation. Although the DNA methylation level of a single gene is important to affect ...

    Authors: Sheng-Hui Jiang, Qing-Guo Sun, Min Chen, Nan Wang, Hai-Feng Xu, Hong-Cheng Fang, Yi-Cheng Wang, Zong-Ying Zhang and Xue-Sen Chen
    Citation: BMC Genomics 2019 20:117
    Content type: Research article Published on:

  2. The dermatophyte Trichophyton rubrum is an anthropophilic filamentous fungus that infects keratinized tissues and is the most common etiologic agent isolated in human dermatophytoses. The clinical treatment of th...

    Authors: Gabriela Felix Persinoti, Nalu Teixeira de Aguiar Peres, Tiago Rinaldi Jacob, Antonio Rossi, Ricardo Zorzetto Vêncio and Nilce Maria Martinez-Rossi
    Citation: BMC Genomics 2014 15(Suppl 7):S1
    Content type: Research Published on:

    This article is part of a Supplement: Volume 15 Supplement 7

  3. Previous studies examining post-feeding organ regeneration in the Burmese python (Python molurus bivittatus) have identified thousands of genes that are significantly differentially regulated during this process....

    Authors: Audra L. Andrew, Blair W. Perry, Daren C. Card, Drew R. Schield, Robert P. Ruggiero, Suzanne E. McGaugh, Amit Choudhary, Stephen M. Secor and Todd A. Castoe
    Citation: BMC Genomics 2017 18:338
    Content type: Research article Published on:

  4. Three-amino-loop-extension (TALE) superfamily genes are widely present in plants and function directly in plant growth and development and abiotic stress response. Although TALE genes have been studied in many pl...

    Authors: Yuxuan Han, Lili Zhang, Luyu Yan, Xinxin Xiong, Wenjing Wang, Xiao-Hong Zhang and Dong-Hong Min
    Citation: BMC Genomics 2022 23:89
    Content type: Research Published on:

  5. Anguillicola crassus is an economically and ecologically important parasitic nematode of eels. The native range of A. crassus is in East Asia, where it infects Anguilla japonica, the Japanese eel. A. crassus was ...

    Authors: Emanuel Heitlinger, Stephen Bridgett, Anna Montazam, Horst Taraschewski and Mark Blaxter
    Citation: BMC Genomics 2013 14:87
    Content type: Research article Published on:

  6. Our main purpose was to evaluate the expression of plastic and evolved genes involved in ecological speciation in the noctuid moth Spodoptera frugiperda, the fall armyworm (FAW); and to demonstrate how host plant...

    Authors: Karina Lucas Silva-Brandão, Renato Jun Horikoshi, Daniel Bernardi, Celso Omoto, Antonio Figueira and Marcelo Mendes Brandão
    Citation: BMC Genomics 2017 18:792
    Content type: Research article Published on:

  7. Functional genomics employs several experimental approaches to investigate gene functions. High-throughput techniques, such as loss-of-function screening and transcriptome profiling, allow to identify lists of...

    Authors: Natalia Rubanova, Guillaume Pinna, Jeremie Kropp, Anna Campalans, Juan Pablo Radicella, Anna Polesskaya, Annick Harel-Bellan and Nadya Morozova
    Citation: BMC Genomics 2020 21:632
    Content type: Methodology article Published on:

  8. Within the last decade a large number of noncoding RNA genes have been identified, but this may only be the tip of the iceberg. Using comparative genomics a large number of sequences that have signals concorda...

    Authors: Christian Weile, Paul P Gardner, Mads M Hedegaard and Jeppe Vinther
    Citation: BMC Genomics 2007 8:244
    Content type: Research article Published on:

  9. Asbestos has been shown to cause chromosomal damage and DNA aberrations. Exposure to asbestos causes many lung diseases e.g. asbestosis, malignant mesothelioma, and lung cancer, but the disease-related process...

    Authors: Penny Nymark, Pamela M Lindholm, Mikko V Korpela, Leo Lahti, Salla Ruosaari, Samuel Kaski, Jaakko Hollmén, Sisko Anttila, Vuokko L Kinnula and Sakari Knuutila
    Citation: BMC Genomics 2007 8:62
    Content type: Research article Published on:

  10. Unravelling the path from genotype to phenotype, as it is influenced by an organism's environment, is one of the central goals in biology. Gene expression profiling by means of microarrays has become very prom...

    Authors: Susan CP Renn, Nadia Aubin-Horth and Hans A Hofmann
    Citation: BMC Genomics 2004 5:42
    Content type: Methodology article Published on:

  11. Non-coding RNAs (ncRNAs) are important players in the post transcriptional regulation of gene expression (PTGR). On one hand, microRNAs (miRNAs) are an abundant class of small ncRNAs (~22nt long) that negative...

    Authors: Chandran Nithin, Amal Thomas, Jolly Basak and Ranjit Prasad Bahadur
    Citation: BMC Genomics 2017 18:878
    Content type: Research article Published on:

  12. DNA methylation plays an important role in life processes by affecting gene expression, but it is still unclear how DNA methylation is controlled and how it regulates gene transcription under high temperature ...

    Authors: Anzheng Liu, Fanshuang Zeng, Luo Wang, Hao Zhen, Xinglong Xia, Honglin Pei, Changkun Dong, Yanmin Zhang and Jun Ding
    Citation: BMC Genomics 2023 24:491
    Content type: Research Published on:

  13. Bacteriophages that infect the opportunistic pathogen Pseudomonas aeruginosa have been classified into several groups. One of them, which includes temperate phage particles with icosahedral heads and long flexibl...

    Authors: Adrián Cazares, Guillermo Mendoza-Hernández and Gabriel Guarneros
    Citation: BMC Genomics 2014 15:1146
    Content type: Research article Published on:

  14. The Senegalese sole, Solea senegalensis, is a highly prized flatfish of growing commercial interest for aquaculture in Southern Europe. However, despite the industrial production of Senegalese sole being hampered...

    Authors: Joan Cerdà, Jaume Mercadé, Juan José Lozano, Manuel Manchado, Angèle Tingaud-Sequeira, Antonio Astola, Carlos Infante, Silke Halm, Jordi Viñas, Barbara Castellana, Esther Asensio, Pedro Cañavate, Gonzalo Martínez-Rodríguez, Francesc Piferrer, Josep V Planas, Francesc Prat…
    Citation: BMC Genomics 2008 9:508
    Content type: Research article Published on:

  15. Grape ripening represents the third phase of the double sigmoidal curve of berry development and is characterized by deep changes in the organoleptic characteristics. In this process, the skin plays a central ...

    Authors: Alfredo S Negri, Bhakti Prinsi, Mara Rossoni, Osvaldo Failla, Attilio Scienza, Maurizio Cocucci and Luca Espen
    Citation: BMC Genomics 2008 9:378
    Content type: Research article Published on:

  16. Although profiling of RNA in single cells has broadened our understanding of development, cancer biology and mechanisms of disease dissemination, it requires the development of reliable and flexible methods. H...

    Authors: Dominic G Rothwell, Yaoyong Li, Mahmood Ayub, Catriona Tate, Gillian Newton, Yvonne Hey, Louise Carter, Suzanne Faulkner, Massimo Moro, Stuart Pepper, Crispin Miller, Fiona Blackhall, Giulia Bertolini, Luca Roz, Caroline Dive and Ged Brady
    Citation: BMC Genomics 2014 15:1129
    Content type: Research article Published on:

  17. Overlapping genes share same genomic regions in parallel (sense) or anti-parallel (anti-sense) orientations. These gene pairs seem to occur in all domains of life and are best known from viruses. However, the ...

    Authors: Majid Mehravar, Fatemeh Ghaemimanesh and Ensieh M. Poursani
    Citation: BMC Genomics 2021 22:718
    Content type: Research Published on:

  19. Zebrafish is a clinically-relevant model of heart regeneration. Unlike mammals, it has a remarkable heart repair capacity after injury, and promises novel translational applications. Amputation and cryoinjury ...

    Authors: Sophie Rodius, Petr V Nazarov, Isabel A Nepomuceno-Chamorro, Céline Jeanty, Juan Manuel González-Rosa, Mark Ibberson, Ricardo M Benites da Costa, Ioannis Xenarios, Nadia Mercader and Francisco Azuaje
    Citation: BMC Genomics 2014 15:852
    Content type: Research article Published on:

  20. The identification of cell type-specific genes (markers) is an essential step for the deconvolution of the cellular fractions, primarily, from the gene expression data of a bulk sample. However, the genes with...

    Authors: Huamei Li, Amit Sharma, Wenglong Ming, Xiao Sun and Hongde Liu
    Citation: BMC Genomics 2020 21:652
    Content type: Research article Published on:

  22. The Cold Shock proteins are RNA binding proteins involved in various cellular processes, including adaptation to low temperature, nutritional stress, cell growth and stationary phase. They may have an impact o...

    Authors: Juliana S. Santos, Carolina A. P. T. da Silva, Heloise Balhesteros, Rogério F. Lourenço and Marilis V. Marques
    Citation: BMC Genomics 2015 16:638
    Content type: Research article Published on:

  23. Ascomycete Cordyceps species have been using as valued traditional Chinese medicines. Particularly, the fruiting bodies of Cordyceps cicadae (syn. Isaria cicadae) have long been utilized for the treatment of chro...

    Authors: Yuzhen Lu, Feifei Luo, Kai Cen, Guohua Xiao, Ying Yin, Chunru Li, Zengzhi Li, Shuai Zhan, Huizhan Zhang and Chengshu Wang
    Citation: BMC Genomics 2017 18:668
    Content type: Research article Published on:

  24. Recombinant human erythropoietin (rHuEpo) can improve human performance and is therefore frequently abused by athletes. As a result, the World Anti-Doping Agency (WADA) introduced the Athlete Biological Passpo...

    Authors: Guan Wang, Jérôme Durussel, Jonathan Shurlock, Martin Mooses, Noriyuki Fuku, Georgie Bruinvels, Charles Pedlar, Richard Burden, Andrew Murray, Brendan Yee, Anne Keenan, John D. McClure, Pierre-Edouard Sottas and Yannis P. Pitsiladis
    Citation: BMC Genomics 2017 18(Suppl 8):817
    Content type: Research Published on:

    This article is part of a Supplement: Volume 18 Supplement 8

  25. Pectobacterium parmentieri is a newly established species within the plant pathogenic family Pectobacteriaceae. Bacteria belonging to this species are causative agents of diseases in economically important crops ...

    Authors: S. Zoledowska, A. Motyka-Pomagruk, W. Sledz, A. Mengoni and E. Lojkowska
    Citation: BMC Genomics 2018 19:751
    Content type: Research article Published on:

  26. Long non-coding RNAs (lncRNAs) play a critical role in the pathogenesis of hypoxic pulmonary hypertension (HPH). The role of N7-methylguanosine (m7G) modification in lncRNAs has received increased attentions i...

    Authors: Huan Wang, Ren Biao Chen, Si Ni Zhang and Rui Feng Zhang
    Citation: BMC Genomics 2022 23:33
    Content type: Research Published on:

  27. The H9c2 myoblast cell line, isolated from the left ventricular tissue of rat, is currently used in vitro as a mimetic for skeletal and cardiac muscle due to its biochemical, morphological, and electrical/horm...

    Authors: Carlos Campero-Basaldua, Jessica Herrera-Gamboa, Judith Bernal-Ramírez, Silvia Lopez-Moran, Luis-Alberto Luévano-Martínez, Hugo Alves-Figueiredo, Guillermo Guerrero, Gerardo García-Rivas and Víctor Treviño
    Citation: BMC Genomics 2023 24:431
    Content type: Research Published on:

  28. Mitogen-activated protein kinase kinase kinases (MAPKKKs) are the important components of MAPK cascades, which play the crucial role in plant growth and development as well as in response to diverse stresses. ...

    Authors: Meng Wang, Hong Yue, Kewei Feng, Pingchuan Deng, Weining Song and Xiaojun Nie
    Citation: BMC Genomics 2016 17:668
    Content type: Research article Published on:

  29. Changes in energy metabolism of the cells are common to many kinds of tumors and are considered a hallmark of cancer. Gas chromatography followed by time-of-flight mass spectrometry (GC-TOFMS) is a well-suited...

    Authors: Jan Budczies, Carsten Denkert, Berit M Müller, Scarlet F Brockmöller, Frederick Klauschen, Balazs Györffy, Manfred Dietel, Christiane Richter-Ehrenstein, Ulrike Marten, Reza M Salek, Julian L Griffin, Mika Hilvo, Matej Orešič, Gert Wohlgemuth and Oliver Fiehn
    Citation: BMC Genomics 2012 13:334
    Content type: Research article Published on:

  30. The appropriate timing of bolting and flowering is pivotal for reproductive success in Brassicaceae crops including radish (Raphanus sativus L.). Although several flowering regulatory pathways had been described ...

    Authors: Shanshan Nie, Chao Li, Liang Xu, Yan Wang, Danqiong Huang, Everlyne M. Muleke, Xiaochuan Sun, Yang Xie and Liwang Liu
    Citation: BMC Genomics 2016 17:389
    Content type: Research article Published on:

  31. Aliivibrio wodanis and Moritella viscosa have often been isolated concurrently from fish with winter-ulcer disease. Little is known about the interaction between the two bacterial species and h...

    Authors: Erik Hjerde, Christian Karlsen, Henning Sørum, Julian Parkhill, Nils Peder Willassen and Nicholas R. Thomson
    Citation: BMC Genomics 2015 16:447
    Content type: Research article Published on:

  32. Seed germination and young seedling growth are important agricultural traits for developing populations of both irrigated and directly seeded rice. Previous studies have focused on the identification of QTLs. ...

    Authors: Jing Yang, Ling Su, Dandan Li, Lixin Luo, Kai Sun, Meng Yang, Fengwei Gu, Aoyun Xia, Yongzhu Liu, Hui Wang, Zhiqiang Chen and Tao Guo
    Citation: BMC Genomics 2020 21:603
    Content type: Research article Published on:

  33. To overcome the ethical and technical limitations of in vivo human disease models, the broader scientific community frequently employs model organism-derived cell lines to investigate disease mechanisms, pathw...

    Authors: Rachel J. Boyd, Sarah A. McClymont, Nelson B. Barrientos, Paul W. Hook, William D. Law, Rebecca J. Rose, Eric L. Waite, Jay Rathinavelu, Dimitrios Avramopoulos and Andrew S. McCallion
    Citation: BMC Genomics 2023 24:306
    Content type: Research Published on:

  34. Protoporphyrin IX (Pp IX) is the primary pigment for brown eggshells. However, the regulatory mechanisms directing Pp IX synthesis, transport, and genetic regulation during eggshell calcification in chickens r...

    Authors: Jing Yang, Zhiqiong Mao, Xiqiong Wang, Jingjie Zhuang, Sijia Gong, Zhouyang Gao, Guiyun Xu, Ning Yang and Congjiao Sun
    Citation: BMC Genomics 2022 23:761
    Content type: Research Published on:

  35. Plant homeodomain (PHD) finger proteins are widely present in all eukaryotes and play important roles in chromatin remodeling and transcriptional regulation. The PHD finger can specifically bind a number of hi...

    Authors: Intikhab Alam, Cui-Cui Liu, Hong-Liu Ge, Khadija Batool, Yan-Qing Yang and Yun-Hai Lu
    Citation: BMC Genomics 2019 20:773
    Content type: Research article Published on:

  36. Pain is a subjective experience derived from complex interactions among biological, environmental, and psychosocial pathways. Sex differences in pain sensitivity and chronic pain prevalence are well establishe...

    Authors: Kimberly E. Stephens, Weiqiang Zhou, Zhicheng Ji, Zhiyong Chen, Shaoqiu He, Hongkai Ji, Yun Guan and Sean D. Taverna
    Citation: BMC Genomics 2019 20:147
    Content type: Research article Published on:

  37. Single-cell sequencing enables us to better understand genetic diseases, such as cancer or autoimmune disorders, which are often affected by changes in rare cells. Currently, no existing software is aimed at i...

    Authors: Adam Cornish, Shrabasti Roychoudhury, Krishna Sarma, Suravi Pramanik, Kishor Bhakat, Andrew Dudley, Nitish K. Mishra and Chittibabu Guda
    Citation: BMC Genomics 2020 21(Suppl 11):830
    Content type: Research Published on:

    This article is part of a Supplement: Volume 21 Supplement 11

  38. The first generation of genome sequence assemblies and annotations have had a significant impact upon our understanding of the biology of the sequenced species, the phylogenetic relationships among species, th...

    Authors: Christine G Elsik, Kim C Worley, Anna K Bennett, Martin Beye, Francisco Camara, Christopher P Childers, Dirk C de Graaf, Griet Debyser, Jixin Deng, Bart Devreese, Eran Elhaik, Jay D Evans, Leonard J Foster, Dan Graur, Roderic Guigo, Katharina Jasmin Hoff…
    Citation: BMC Genomics 2014 15:86
    Content type: Research article Published on:

  40. MicroRNAs (miRNAs) are a large family of endogenous, non-coding RNAs, about 22 nucleotides long, which regulate gene expression through sequence-specific base pairing with target mRNAs. Extensive studies have ...

    Authors: Chao Yuan, Xiaolong Wang, Rongqing Geng, Xiaolin He, Lei Qu and Yulin Chen
    Citation: BMC Genomics 2013 14:511
    Content type: Research article Published on:

  41. DNA microarrays are a powerful tool with important applications such as global gene expression profiling. Construction of bacterial DNA microarrays from genomic sequence data using a two-stage PCR amplificatio...

    Authors: Bradley L Postier, Hong-Liang Wang, Abhay Singh, Lori Impson, Heather L Andrews, Jessica Klahn, Hong Li, George Risinger, David Pesta, Michael Deyholos, David W Galbraith, Louis A Sherman and Robert L Burnap
    Citation: BMC Genomics 2003 4:23
    Content type: Methodology article Published on:

  42. Adaptations by arthropod pests to host plant defenses of crops determine their impacts on agricultural production. The larval host range of western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrys...

    Authors: Brad S. Coates, Kimberly K. O. Walden, Dimpal Lata, Neetha Nanoth Vellichirammal, Robert F. Mitchell, Martin N. Andersson, Rachel McKay, Marcé D. Lorenzen, Nathaniel Grubbs, Yu-Hui Wang, Jinlong Han, Jing Li Xuan, Peter Willadsen, Huichun Wang, B. Wade French, Raman Bansal…
    Citation: BMC Genomics 2023 24:19
    Content type: Research Published on:

  43. Halyomorpha halys (Stål), the brown marmorated stink bug, is a highly invasive insect species due in part to its exceptionally high levels of polyphagy. This species is also a nuisance due to overwintering in hum...

    Authors: Michael E. Sparks, Raman Bansal, Joshua B. Benoit, Michael B. Blackburn, Hsu Chao, Mengyao Chen, Sammy Cheng, Christopher Childers, Huyen Dinh, Harsha Vardhan Doddapaneni, Shannon Dugan, Elena N. Elpidina, David W. Farrow, Markus Friedrich, Richard A. Gibbs, Brantley Hall…
    Citation: BMC Genomics 2020 21:227
    Content type: Research article Published on:

  44. Tilapia (Oreochromis niloticus) cultures are frequently infected by Vibrio vulnificus, causing major economic losses to production units. Previously, tilapia expressing recombinant delta-5 desaturase and delta-6 ...

    Authors: Pin-Yang Tu, Shin-Jie Huang, Venugopal Rajanbabu, Jen-Leih Wu and Jyh-Yih Chen
    Citation: BMC Genomics 2021 22:200
    Content type: Research article Published on:

  45. DNA methylation, instrumental in numerous life processes, underscores the paramount importance of its accurate prediction. Recent studies suggest that deep learning, due to its capacity to extract profound ins...

    Authors: Linlin Zhuo, Rui Wang, Xiangzheng Fu and Xiaojun Yao
    Citation: BMC Genomics 2023 24:742
    Content type: Research Published on:

  46. Bacillus cereus is a notorious foodborne pathogen, which can grow under anoxic conditions. Anoxic growth is supported by endogenous redox metabolism, for which the thiol redox proteome serves as an interface. Her...

    Authors: Fella Hamitouche, Jean-Charles Gaillard, Philippe Schmitt, Jean Armengaud, Catherine Duport and Luc Dedieu
    Citation: BMC Genomics 2021 22:648
    Content type: Research Published on:

  47. Measuring allele-specific RNA expression provides valuable insights into cis-acting genetic and epigenetic regulation of gene expression. Widespread adoption of high-throughput sequencing technologies for studyin...

    Authors: Rong Lu, Ryan M Smith, Michal Seweryn, Danxin Wang, Katherine Hartmann, Amy Webb, Wolfgang Sadee and Grzegorz A Rempala
    Citation: BMC Genomics 2015 16:566
    Content type: Methodology article Published on:

  48. There is a worldwide interest for sustainable and environmentally-friendly ways to produce fuels and chemicals from renewable resources. Among them, the production of acetone, butanol and ethanol (ABE) or Isop...

    Authors: Hadrien Máté de Gérando, François Wasels, Angélique Bisson, Benjamin Clement, Frédérique Bidard, Etienne Jourdier, Ana María López-Contreras and Nicolas Lopes Ferreira
    Citation: BMC Genomics 2018 19:242
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2018 19:423

  49. Genome-wide association (GWA) mapping has recently emerged as a valuable approach for refining the genetic basis of polygenic resistance to plant diseases, which are increasingly used in integrated strategies ...

    Authors: Aurore Desgroux, Virginie L’Anthoëne, Martine Roux-Duparque, Jean-Philippe Rivière, Grégoire Aubert, Nadim Tayeh, Anne Moussart, Pierre Mangin, Pierrick Vetel, Christophe Piriou, Rebecca J. McGee, Clarice J. Coyne, Judith Burstin, Alain Baranger, Maria Manzanares-Dauleux, Virginie Bourion…
    Citation: BMC Genomics 2016 17:124
    Content type: Research article Published on:

  50. The exonization of transposable elements (TEs) has proven to be a significant mechanism for the creation of novel exons. Existing knowledge of the retention patterns of TE exons in mRNAs were mainly establishe...

    Authors: Wensheng Zhang, Andrea Edwards, Wei Fan, Zhide Fang, Prescott Deininger and Kun Zhang
    Citation: BMC Genomics 2013 14:584
    Content type: Research article Published on:

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BMC Genomics

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