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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Global wheat productivity is seriously challenged by a range of rust pathogens, especially leaf rust derived from Puccinia triticina. Since the most efficient approach to control leaf rust is genetic resistance, ...

    Authors: Saba Delfan, Mohammad Reza Bihamta, Seyed Taha Dadrezaei, Alireza Abbasi and Hadi Alipour
    Citation: BMC Genomics 2023 24:83
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:263

  2. Competition between bacteria for habitat and resources is very common in the natural environment and is considered to be a selective force for survival. Many strains of the genus Pseudoalteromonas were confirmed ...

    Authors: Min Yu, Kaihao Tang, Jiwen Liu, Xiaochong Shi, Tobias AM Gulder and Xiao-Hua Zhang
    Citation: BMC Genomics 2013 14:707
    Content type: Research article Published on:

  3. Wheat (Triticum aestivum L.) is one of the world’s most important grain crops. The amyloplast, a specialized organelle, is the major site for starch synthesis and storage in wheat grain. Understanding the metabol...

    Authors: Dongyun Ma, Xin Huang, Junfeng Hou, Ying Ma, Qiaoxia Han, Gege Hou, Chenyang Wang and Tiancai Guo
    Citation: BMC Genomics 2018 19:768
    Content type: Research article Published on:

  4. Metabolic stress associated with negative energy balance in high producing dairy cattle and obesity in women is a risk factor for decreased fertility. Non-esterified fatty acids (NEFA) are involved in this pat...

    Authors: K. L. J Desmet, V. Van Hoeck, D. Gagné, E. Fournier, A. Thakur, A. M. O’Doherty, C. P. Walsh, M. A. Sirard, P. E. J. Bols and J. L. M. R. Leroy
    Citation: BMC Genomics 2016 17:1004
    Content type: Research article Published on:

  5. A considerable fraction of microRNAs (miRNAs) are highly conserved, and certain miRNAs correspond to genomic clusters. The clustering of miRNAs can be advantageous, possibly by allowing coordinated expression....

    Authors: Huiqin Niu, Yifan Pang, Lingli Xie, Qiaozhen Yu, Yubang Shen, Jiale Li and Xiaoyan Xu
    Citation: BMC Genomics 2023 24:73
    Content type: Research Published on:

  6. Sex allocation of offspring in mammals is usually considered as a matter of chance, being dependent on whether an X- or a Y-chromosome-bearing spermatozoon reaches the oocyte first. Here we investigated the al...

    Authors: Carmen Almiñana, Ignacio Caballero, Paul Roy Heath, Saeedeh Maleki-Dizaji, Inmaculada Parrilla, Cristina Cuello, Maria Antonia Gil, Jose Luis Vazquez, Juan Maria Vazquez, Jordi Roca, Emilio Arsenio Martinez, William Vincent Holt and Alireza Fazeli
    Citation: BMC Genomics 2014 15:293
    Content type: Research article Published on:

  7. Considering relatives’ health history in logistic regression for case–control genome-wide association studies (CC-GWAS) may provide new information that increases accuracy and power to detect disease associate...

    Authors: Yixin Zhang, James B. Meigs, Ching-Ti Liu, Josée Dupuis and Chloé Sarnowski
    Citation: BMC Genomics 2022 23:678
    Content type: Research Published on:

  8. Ovarian follicle development plays an important role in determination of poultry egg production. The follicles at the various developmental stages possess their own distinct molecular genetic characteristics a...

    Authors: Xue Sun, Xiaoxia Chen, Jinghua Zhao, Chang Ma, Chunchi Yan, Simushi Liswaniso, Rifu Xu and Ning Qin
    Citation: BMC Genomics 2021 22:899
    Content type: Research Published on:

  9. Cupressus gigantea, a rare and endangered tree species with remarkable medicinal value, is endemic to the Tibetan Plateau. Yet, little is known about the underlying genetics of the unique ecological adaptability ...

    Authors: Shan-Shan Zhou, Zhen Xing, Hui Liu, Xian-Ge Hu, Qiong Gao, Jie Xu, Si-Qian Jiao, Kai-Hua Jia, Yu Qing Jin, Wei Zhao, Ilga Porth, Yousry A. El-Kassaby and Jian-Feng Mao
    Citation: BMC Genomics 2019 20:213
    Content type: Research article Published on:

  10. Recent advances in DNA sequencing techniques resulted in more than forty sequenced plant genomes representing a diverse set of taxa of agricultural, energy, medicinal and ecological importance. However, gene f...

    Authors: Johannes A Hofberger, Beifei Zhou, Haibao Tang, Jonathan DG Jones and M Eric Schranz
    Citation: BMC Genomics 2014 15:966
    Content type: Research article Published on:

  11. Hickory (Carya cathayensis), a woody plant with high nutritional and economic value, is widely planted in China. Due to its long juvenile phase, grafting is a useful technique for large-scale cultivation of hicko...

    Authors: Lingling Qiu, Bo Jiang, Jia Fang, Yike Shen, Zhongxiang Fang, Saravana Kumar RM, Keke Yi, Chenjia Shen, Daoliang Yan and Bingsong Zheng
    Citation: BMC Genomics 2016 17:935
    Content type: Research article Published on:

  12. Interpretation of ever-increasing raw sequence information generated by modern genome sequencing technologies faces multiple challenges, such as gene function analysis and genome annotation. Indeed, nearly 40%...

    Authors: M Carmen Marques, Hugo Alonso-Cantabrana, Javier Forment, Raquel Arribas, Santiago Alamar, Vicente Conejero and Miguel A Perez-Amador
    Citation: BMC Genomics 2009 10:428
    Content type: Research article Published on:

  14. Anuran metamorphosis, which is obligatorily initiated and sustained by thyroid hormone (TH), is a dramatic example of extensive morphological, biochemical and cellular changes occurring during post-embryonic d...

    Authors: Lusha Liu, Wei Zhu, Jiongyu Liu, Shouhong Wang and Jianping Jiang
    Citation: BMC Genomics 2018 19:507
    Content type: Research article Published on:

  15. Genetic variants in immune regulator genes have been associated with numerous diseases, including allergies and cancer. Increasing evidence suggests a substantially elevated disease risk in individuals who car...

    Authors: Janne Pullat, Robert Fleischer, Nikolaus Becker, Markus Beier, Andres Metspalu and Jörg D Hoheisel
    Citation: BMC Genomics 2007 8:282
    Content type: Methodology article Published on:

  16. Hair follicle density influences wool fibre production, which is one of the most important traits of the Wan Strain Angora rabbit. However, molecular mechanisms regulating hair follicle density have remained e...

    Authors: Haisheng Ding, Huiling Zhao, Xiaowei Zhao, Yunxia Qi, Xiaofei Wang and Dongwei Huang
    Citation: BMC Genomics 2021 22:89
    Content type: Research article Published on:

  17. Hematophagy arose independently multiple times during metazoan evolution, with several lineages of vampire animals particularly diversified in invertebrates. However, the biochemistry of hematophagy has been s...

    Authors: Maria Vittoria Modica, Fabrizio Lombardo, Paolo Franchini and Marco Oliverio
    Citation: BMC Genomics 2015 16:441
    Content type: Research article Published on:

  18. Fusarium circinatum, the causal agent of pitch canker disease, poses a serious threat to several Pinus species affecting plantations and nurseries. Although Pinus pinaster has shown moderate resistance to F. circ...

    Authors: Laura Hernandez-Escribano, Erik A. Visser, Eugenia Iturritxa, Rosa Raposo and Sanushka Naidoo
    Citation: BMC Genomics 2020 21:28
    Content type: Research article Published on:

  19. Lactobacillus brevis is a member of the lactic acid bacteria (LAB), and strains of L. brevis have been isolated from silage, as well as from fermented cabbage and other fermented foods. However, this bacterium is...

    Authors: Marine Feyereisen, Jennifer Mahony, Philip Kelleher, Richard John Roberts, Tadhg O’Sullivan, Jan-Maarten A. Geertman and Douwe van Sinderen
    Citation: BMC Genomics 2019 20:416
    Content type: Research article Published on:

  20. Sex pheromone communication in moths has attracted the attention of evolutionary biologists due to the vast array of pheromone compounds used, addressing questions of how this diversity arose and how male rece...

    Authors: Alessandro Grapputo, Amali H. Thrimawithana, Bernd Steinwender and Richard D. Newcomb
    Citation: BMC Genomics 2018 19:94
    Content type: Research article Published on:

  21. Lateral gene transfer (LGT) from bacterial Wolbachia endosymbionts has been detected in ~20% of arthropod and nematode genome sequencing projects. Many of these transfers are large and contain a substantial part ...

    Authors: Lisa Klasson, Nikhil Kumar, Robin Bromley, Karsten Sieber, Melissa Flowers, Sandra H Ott, Luke J Tallon, Siv G E Andersson and Julie C Dunning Hotopp
    Citation: BMC Genomics 2014 15:1097
    Content type: Research article Published on:

  22. The introduction of benchtop sequencers has made adoption of whole genome sequencing possible for a broader community of researchers than ever before. Concurrently, metagenomic sequencing (MGS) is rapidly emer...

    Authors: Kenneth G Frey, Jesus Enrique Herrera-Galeano, Cassie L Redden, Truong V Luu, Stephanie L Servetas, Alfred J Mateczun, Vishwesh P Mokashi and Kimberly A Bishop-Lilly
    Citation: BMC Genomics 2014 15:96
    Content type: Research article Published on:

  23. Barnacles are specialized marine organisms that differ from other crustaceans in possession of a calcareous shell, which is attached to submerged surfaces. Barnacles have a wide distribution, mostly in the int...

    Authors: Zhibin Gan, Jianbo Yuan, Xinming Liu, Dong Dong, Fuhua Li and Xinzheng Li
    Citation: BMC Genomics 2020 21:240
    Content type: Research article Published on:

  24. The Grooved Carpet shell clam Ruditapes decussatus is the autochthonous European clam and the most appreciated from a gastronomic and economic point of view. The production is in decline due to several factors su...

    Authors: Ricardo B Leite, Massimo Milan, Alessandro Coppe, Stefania Bortoluzzi, António dos Anjos, Richard Reinhardt, Carlos Saavedra, Tomaso Patarnello, M Leonor Cancela and Luca Bargelloni
    Citation: BMC Genomics 2013 14:741
    Content type: Research article Published on:

  25. Two decades after the introduction of oil-based vaccines in the control of bacterial and viral diseases in farmed salmonids, the mechanisms of induced side effects manifested as intra-abdominal granulomas rema...

    Authors: Stephen Mutoloki, Glenn A Cooper, Inderjit S Marjara, Ben F Koop and Øystein Evensen
    Citation: BMC Genomics 2010 11:336
    Content type: Research article Published on:

  27. Rapid adaptation to new environments can facilitate species invasions and range expansions. Understanding the mechanisms of adaptation used by invasive disease vectors in new regions has key implications for m...

    Authors: Shaghayegh Soudi, Marc Crepeau, Travis C. Collier, Yoosook Lee, Anthony J. Cornel and Gregory C. Lanzaro
    Citation: BMC Genomics 2023 24:311
    Content type: Research Published on:

  28. Seisonidea (also Seisonacea or Seisonidae) is a group of small animals living on marine crustaceans (Nebalia spec.) with only four species described so far. Its monophyletic origin with mostly free-living wheel a...

    Authors: Katharina M. Mauer, Hanno Schmidt, Marco Dittrich, Andreas C. Fröbius, Sören Lukas Hellmann, Hans Zischler, Thomas Hankeln and Holger Herlyn
    Citation: BMC Genomics 2021 22:604
    Content type: Research Published on:

  29. DNA methyltransferase (DMT) genes contribute to plant stress responses and development by de novo establishment and subsequent maintenance of DNA methylation during replication. The photoperiod and/or temperat...

    Authors: Dan Li, Bian-E Feng, Yong-Jie Liu, Jie Gong, Yi-Miao Tang, Li-Ping Zhang, Bin-Shuang Pang, Ren-Wei Sun, Feng-Ting Zhang, Zhao-Bo Chen, Yong-Bo Wang, Xian-Chao Chen, Ai-Ping Wang, Chang-Ping Zhao and Shi-Qing Gao
    Citation: BMC Genomics 2021 22:310
    Content type: Research article Published on:

  30. Phosphorus is one of the most important macronutrients that is required for plant growth and development. However, stress under low-P conditions has become a limiting factor that affects crop yields and qualit...

    Authors: Qing Wang, Jiao Wang, Yuming Yang, Wenkai Du, Dan Zhang, Deyue Yu and Hao Cheng
    Citation: BMC Genomics 2016 17:192
    Content type: Research article Published on:

  31. The zygomycete fungi like Rhizomucor miehei have been extensively exploited for the production of various enzymes. As a thermophilic fungus, R. miehei is capable of growing at temperatures that approach the upper...

    Authors: Peng Zhou, Guoqiang Zhang, Shangwu Chen, Zhengqiang Jiang, Yanbin Tang, Bernard Henrissat, Qiaojuan Yan, Shaoqing Yang, Chin-Fu Chen, Bing Zhang and Zhenglin Du
    Citation: BMC Genomics 2014 15:294
    Content type: Research article Published on:

  32. The number of myofiber is determined during the embryonic stage and does not increase during the postnatal period for birds, including goose. Thus, muscle production of adult goose is pre-determined during emb...

    Authors: Tieshan Xu, Zijie Xu, Lizhi Lu, Tao Zeng, Lihong Gu, Yongzhen Huang, Shunjin Zhang, Peng Yang, Yifan Wen, Dajie Lin, Manping Xing, Lili Huang, Guojun Liu, Zhe Chao and Weiping Sun
    Citation: BMC Genomics 2021 22:270
    Content type: Research article Published on:

  33. There is an increasing drive to replace fish oil (FO) in finfish aquaculture diets with vegetable oils (VO), driven by the short supply of FO derived from wild fish stocks. However, little is known of the cons...

    Authors: Michael J Leaver, Laure AN Villeneuve, Alex Obach, Linda Jensen, James E Bron, Douglas R Tocher and John B Taggart
    Citation: BMC Genomics 2008 9:299
    Content type: Research article Published on:

  34. Piwi-interacting RNAs (piRNAs) have been linked to epigenetic and post-transcriptional gene silencing of retrotransposons in germ line cells, particularly in spermatogenesis. Exosomes are important mediators o...

    Authors: Bo Zhang, Na Zhao, Lei Jia, Jinyuan Che, Xiaoxu He, Kefeng Liu and Baolong Bao
    Citation: BMC Genomics 2020 21:302
    Content type: Research article Published on:

  35. A very large and rapidly growing collection of transcriptomic profiles in public repositories is potentially of great value to developing data-driven bioinformatics applications for toxicology/ecotoxicology. M...

    Authors: Rong-Lin Wang, Adam D. Biales, Natalia Garcia-Reyero, Edward J. Perkins, Daniel L. Villeneuve, Gerald T. Ankley and David C. Bencic
    Citation: BMC Genomics 2016 17:84
    Content type: Research article Published on:

  36. Co-regulation of genes may imply involvement in similar biological processes or related function. Many clusters of co-regulated genes have been identified using microarray experiments. In this study, we examin...

    Authors: Wei Ding, Luquan Wang, Ping Qiu, Mitchel Kostich, Jonathan Greene and Marco Hernandez
    Citation: BMC Genomics 2002 3:32
    Content type: Research article Published on:

  37. Wild plants of Vitis closely related to the cultivated grapevine (V. v. vinifera) are believed to have been first domesticated 10,000 years BC around the Caspian Sea. V. v. vinifera is hermaphrodite whereas V. v....

    Authors: Miguel Jesus Nunes Ramos, João Lucas Coito, Helena Gomes Silva, Jorge Cunha, Maria Manuela Ribeiro Costa and Margarida Rocheta
    Citation: BMC Genomics 2014 15:1095
    Content type: Research article Published on:

  38. Transposable elements (TEs) are DNA sequences, present in the genome of most eukaryotic organisms that hold the key characteristic of being able to mobilize and increase their copy number within chromosomes. T...

    Authors: Rita D Fernández-Medina, Cláudio J Struchiner and José MC Ribeiro
    Citation: BMC Genomics 2011 12:260
    Content type: Research article Published on:

  40. Past selection events left footprints in the genome of domestic animals, which can be traced back by stretches of homozygous genotypes, designated as runs of homozygosity (ROHs). The analysis of common ROH reg...

    Authors: Jan Berghöfer, Nadia Khaveh, Stefan Mundlos and Julia Metzger
    Citation: BMC Genomics 2022 23:564
    Content type: Research Published on:

  41. MicroRNAs (miRNAs) play important roles in embryonic stem cell (ESC) self-renewal and pluripotency. Numerous studies have revealed human and mouse ESC miRNA profiles. As a model for human-related study, the rh...

    Authors: Zhenghua Sun, Qiang Wei, Yanfeng Zhang, Xiechao He, Weizhi Ji and Bing Su
    Citation: BMC Genomics 2011 12:276
    Content type: Research article Published on:

  42. Hearing loss is the most common sensory defect afflicting several hundred million people worldwide. In most cases, regardless of the original cause, hearing loss is related to the degeneration and death of hai...

    Authors: Sabrina Riccardi, Sebastian Bergling, Frederic Sigoillot, Martin Beibel, Annick Werner, Juliet Leighton-Davies, Judith Knehr, Tewis Bouwmeester, Christian N. Parker, Guglielmo Roma and Bernd Kinzel
    Citation: BMC Genomics 2016 17:309
    Content type: Research article Published on:

  43. The evolution of animal mitochondrial (mt) genomes has resulted in a highly conserved structure: a single compact circular chromosome approximately 14 to 20 kb long. Within the last two decades exceptions to t...

    Authors: Wendy S. Phillips, Amanda M. V. Brown, Dana K. Howe, Amy B. Peetz, Vivian C. Blok, Dee R. Denver and Inga A. Zasada
    Citation: BMC Genomics 2016 17:706
    Content type: Research article Published on:

  45. Mosquito saliva, consisting of a mixture of dozens of proteins affecting vertebrate hemostasis and having sugar digestive and antimicrobial properties, helps both blood and sugar meal feeding. Culicine and ano...

    Authors: Eric Calvo, Van M Pham, Osvaldo Marinotti, John F Andersen and José MC Ribeiro
    Citation: BMC Genomics 2009 10:57
    Content type: Research article Published on:

  46. Understanding growth regulatory pathways is important in aquaculture, fisheries, and vertebrate physiology generally. Machine learning pattern recognition and sensitivity analysis were employed to examine meta...

    Authors: Sarah A. S. Rajab, Linnea K. Andersen, Linas W. Kenter, David L. Berlinsky, Russell J. Borski, Andrew S. McGinty, Christopher M. Ashwell, Peter R. Ferket, Harry V. Daniels and Benjamin J. Reading
    Citation: BMC Genomics 2024 25:580
    Content type: Research Published on:

  48. Receptor-like kinases (RLKs) belong to a large protein family with over 600 members in Arabidopsis and over 1000 in rice. Among RLKs, the lectin receptor-like kinases (LecRLKs) possess a characteristic extrace...

    Authors: Yongil Yang, Jessy Labbé, Wellington Muchero, Xiaohan Yang, Sara S. Jawdy, Megan Kennedy, Jenifer Johnson, Avinash Sreedasyam, Jeremy Schmutz, Gerald A. Tuskan and Jin-Gui Chen
    Citation: BMC Genomics 2016 17:699
    Content type: Research article Published on:

  49. Alcohol dehydrogenases (ADHs) in plants are encoded by a multigene family. ADHs participate in growth, development, and adaptation in many plant species, but the evolution and function of the ADH gene family in s...

    Authors: Weihua Su, Yongjuan Ren, Dongjiao Wang, Yachun Su, Jingfang Feng, Chang Zhang, Hanchen Tang, Liping Xu, Khushi Muhammad and Youxiong Que
    Citation: BMC Genomics 2020 21:521
    Content type: Research article Published on:

  50. Chlamydia are ancient intracellular pathogens with reduced, though strikingly conserved genome. Despite their parasitic lifestyle and isolated intracellular environment, these bacteria managed to avoid accumulati...

    Authors: Olga M. Sigalova, Andrei V. Chaplin, Olga O. Bochkareva, Pavel V. Shelyakin, Vsevolod A. Filaretov, Evgeny E. Akkuratov, Valentina Burskaia and Mikhail S. Gelfand
    Citation: BMC Genomics 2019 20:710
    Content type: Research Article Published on:

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