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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The completion and reporting of baculovirus genomes is extremely important as it advances our understanding of gene function and evolution. Due to the large number of viral genomes now sequenced it is very imp...

    Authors: Zuo-Ming Nie, Zhi-Fang Zhang, Dan Wang, Ping-An He, Cai-Ying Jiang, Li Song, Fang Chen, Jie Xu, Ling Yang, Lin-Lin Yu, Jian Chen, Zheng-Bing Lv, Jing-Jing Lu, Xiang-Fu Wu and Yao-Zhou Zhang
    Citation: BMC Genomics 2007 8:248
  2. Paeonia veitchii Lynch, a well-known herb from the Qinghai-Tibet Plateau south of the Himalayas, can synthesize specific monoterpene glycosides (PMGs) with multiple pharmacological activities, and its rhizome ha...

    Authors: Shaoshan Zhang, Jun-zhang Qu-Bie, Ming-kang Feng, A-xiang Qu-Bie, Yanfei Huang, Zhi-feng Zhang, Xin-jia Yan and Yuan Liu
    Citation: BMC Genomics 2023 24:45
  3. Salmonids are of interest because of their relatively recent genome duplication, and their extensive use in wild fisheries and aquaculture. A comprehensive gene list and a comparison of genes in some of the di...

    Authors: Ben F Koop, Kristian R von Schalburg, Jong Leong, Neil Walker, Ryan Lieph, Glenn A Cooper, Adrienne Robb, Marianne Beetz-Sargent, Robert A Holt, Richard Moore, Sonal Brahmbhatt, Jamie Rosner, Caird E Rexroad III, Colin R McGowan and William S Davidson
    Citation: BMC Genomics 2008 9:545
  4. Atlantic cod (Gadus morhua), is known to vary genetically across the North Atlantic, Greenland, and Newfoundland. This genetic variation occurs both spatially and temporally through decades of heavy fishing, and ...

    Authors: Bryan T. Barney, Christiane Munkholm, David R. Walt and Stephen R. Palumbi
    Citation: BMC Genomics 2017 18:271
  5. The nuclear transport machinery is involved in a well-known male meiotic drive system in Drosophila. Fast gene evolution and gene duplications have been major underlying mechanisms in the evolution of meiotic dri...

    Authors: Ayda Mirsalehi, Dragomira N. Markova, Mohammadmehdi Eslamieh and Esther Betrán
    Citation: BMC Genomics 2021 22:876
  6. Urochloa humidicola (Koronivia grass) is a polyploid (6x to 9x) species that is used as forage in the tropics. Facultative apospory apomixis is present in most of the genotypes of this...

    Authors: Bianca Baccili Zanotto Vigna, Fernanda Ancelmo de Oliveira, Guilherme de Toledo-Silva, Carla Cristina da Silva, Cacilda Borges do Valle and Anete Pereira de Souza
    Citation: BMC Genomics 2016 17:910
  7. Shewanella xiamenensis, widely distributed in natural environments, has long been considered as opportunistic pathogen. Recently, significant changes in the resistance spectrum have been observed in S. xiamenens...

    Authors: Haichen Wang, Fengjun Xia, Yubing Xia, Jun Li, Yongmei Hu, Yating Deng and Mingxiang Zou
    Citation: BMC Genomics 2024 25:216
  8. The delta smelt (Hypomesus transpacificus) is a pelagic fish species listed as endangered under both the USA Federal and Californian State Endangered Species Acts and considered an indicator of ecosystem health i...

    Authors: Richard E Connon, Juergen Geist, Janice Pfeiff, Alexander V Loguinov, Leandro S D'Abronzo, Henri Wintz, Christopher D Vulpe and Inge Werner
    Citation: BMC Genomics 2009 10:608
  9. In Micrococcus luteus growth and resuscitation from starvation-induced dormancy is controlled by the production of a secreted growth factor. This autocrine r esuscitation-p romoting f actor (Rpf) is the founder m...

    Authors: Adriana Ravagnani, Christopher L Finan and Michael Young
    Citation: BMC Genomics 2005 6:39
  10. Members of the heat shock protein 90 (Hsp90) class of proteins are evolutionarily conserved molecular chaperones. They are involved in protein folding, assembly, stabilization, activation, and degradation in m...

    Authors: Jin Zhang, Jianbo Li, Bobin Liu, Li Zhang, Jun Chen and Mengzhu Lu
    Citation: BMC Genomics 2013 14:532
  11. Apoptosis is a critical process in endothelial cell (EC) biology and pathology, which has been extensively studied at protein level. Numerous gene expression studies of EC apoptosis have also been performed, h...

    Authors: Muna Affara, Debbie Sanders, Hiromitsu Araki, Yoshinori Tamada, Benjamin J Dunmore, Sally Humphreys, Seiya Imoto, Christopher Savoie, Satoru Miyano, Satoru Kuhara, David Jeffries, Cristin Print and D Stephen Charnock-Jones
    Citation: BMC Genomics 2013 14:23
  12. Non-targeted whole genome sequencing is a powerful tool to comprehensively identify constituents of microbial communities in a sample. There is no need to direct the analysis to any identification before seque...

    Authors: Klaudia Chrzastek, Chandana Tennakoon, Dagmara Bialy, Graham Freimanis, John Flannery and Holly Shelton
    Citation: BMC Genomics 2022 23:406
  13. Fusarium crown rot (FCR) is a chronic and severe disease in cereal production in semi-arid regions worldwide. A putative quantitative trait locus conferring FCR resistance, Qcrs.cpi-1H, had previously been mapped...

    Authors: Shang Gao, Zhi Zheng, Jonathan Powell, Ahsan Habib, Jiri Stiller, Meixue Zhou and Chunji Liu
    Citation: BMC Genomics 2019 20:650
  14. MicroRNAs (miRNAs) are small regulatory molecules which post-transcriptionally regulate mRNA stability and translation. Several microRNAs have received attention due to their role as key metabolic regulators. ...

    Authors: Jan A Mennigen, Christopher J Martyniuk, Iban Seiliez, Stéphane Panserat and Sandrine Skiba-Cassy
    Citation: BMC Genomics 2014 15:70
  15. A total of 179 Shiga toxin-producing Escherichia coli (STEC) complete genomes were analyzed in terms of serotypes, prophage coding regions, and stx gene variants and their distribution. We further examined the ge...

    Authors: Graça Pinto, Marta Sampaio, Oscar Dias, Carina Almeida, Joana Azeredo and Hugo Oliveira
    Citation: BMC Genomics 2021 22:366
  16. Plant transcriptome profiling has provided a tool for understanding the mechanisms by which plants respond to stress conditions. Analysis of genome-wide transcriptome will provides a useful dataset of drought ...

    Authors: Pil Joong Chung, Harin Jung, Dong-Hoon Jeong, Sun-Hwa Ha, Yang Do Choi and Ju-Kon Kim
    Citation: BMC Genomics 2016 17:563
  17. Seisonidea (also Seisonacea or Seisonidae) is a group of small animals living on marine crustaceans (Nebalia spec.) with only four species described so far. Its monophyletic origin with mostly free-living wheel a...

    Authors: Katharina M. Mauer, Hanno Schmidt, Marco Dittrich, Andreas C. Fröbius, Sören Lukas Hellmann, Hans Zischler, Thomas Hankeln and Holger Herlyn
    Citation: BMC Genomics 2021 22:604
  18. Long-term space travel simulation experiments enabled to discover different aspects of human metabolism such as the complexity of NaCl salt balance. Detailed proteomics data were collected during the Mars105 i...

    Authors: Hans Binder, Henry Wirth, Arsen Arakelyan, Kathrin Lembcke, Evgeny S Tiys, Vladimir A Ivanisenko, Nikolay A Kolchanov, Alexey Kononikhin, Igor Popov, Evgeny N Nikolaev, Lyudmila Kh Pastushkova and Irina M Larina
    Citation: BMC Genomics 2014 15(Suppl 12):S2

    This article is part of a Supplement: Volume 15 Supplement 12

  19. Shiga toxin producing Escherichia coli O157 can cause severe bloody diarrhea and haemolytic uraemic syndrome. Phage typing of E. coli O157 facilitates public health surveillance and outbreak investigations, certa...

    Authors: Lauren A Cowley, Stephen J Beckett, Margo Chase-Topping, Neil Perry, Tim J Dallman, David L Gally and Claire Jenkins
    Citation: BMC Genomics 2015 16:271
  20. Cystic and alveolar echinococcosis caused by the tapeworms Echinococcus granulosus sensu stricto (s.s.) and E. multilocularis, respectively, are important zoonotic diseases. Protease inhibitors are crucial for...

    Authors: Hui Zhang, Mengxiao Tian, Wenjing Qi, Juan Wu, Huajun Zheng, Gang Guo, Liang Zhang, Shiwanthi L. Ranasinghe, Donald P. McManus, Jun Li and Wenbao Zhang
    Citation: BMC Genomics 2021 22:907
  21. Phenotypic plasticity in defensive traits occurs in many species when facing heterogeneous predator regimes. The waterflea Daphnia is well-known for showing a variety of these so called inducible defences. Howeve...

    Authors: Kathrin A Otte, Thomas Fröhlich, Georg J Arnold and Christian Laforsch
    Citation: BMC Genomics 2014 15:306
  22. Most members of the serpin family of proteins are potent, irreversible inhibitors of specific serine or cysteine proteinases. Inhibitory serpins are distinguished from members of other families of proteinase i...

    Authors: Sheila E Francis, Renan A Ersoy, Joon-Woo Ahn, Brian J Atwell and Thomas H Roberts
    Citation: BMC Genomics 2012 13:449
  23. Helicobacter mustelae causes gastritis, ulcers and gastric cancer in ferrets and other mustelids. H. mustelae remains the only helicobacter other than H. pylori that causes gastric ulceration and cancer in its na...

    Authors: Paul W O'Toole, William J Snelling, Carlos Canchaya, Brian M Forde, Kim R Hardie, Christine Josenhans, Robert LJ Graham, Geoff McMullan, Julian Parkhill, Eugenio Belda and Stephen D Bentley
    Citation: BMC Genomics 2010 11:164
  24. The impact of nano-scaled materials on photosynthetic organisms needs to be evaluated. Plants represent the largest interface between the environment and biosphere, so understanding how nanoparticles affect th...

    Authors: Susana García-Sánchez, Irantzu Bernales and Susana Cristobal
    Citation: BMC Genomics 2015 16:341
  25. Superoxide dismutases (SODs) are a key antioxidant enzyme family, which have been implicated in protecting plants against the toxic effects of reactive oxygen species. Despite current studies have shown that t...

    Authors: Wei Wang, Xiaopei Zhang, Fenni Deng, Rui Yuan and Fafu Shen
    Citation: BMC Genomics 2017 18:376
  26. Next-generation sequencing now allows for total RNA extracts to be sequenced in non-model organisms such as bamboos, an economically and ecologically important group of grasses. Bamboos are divided into three ...

    Authors: William P. Wysocki, Eduardo Ruiz-Sanchez, Yanbin Yin and Melvin R. Duvall
    Citation: BMC Genomics 2016 17:384
  27. Nutrient availability during early stages of development (embryogenesis and the first week post-hatch) can have long-term effects on physiological functions and bird metabolism. The embryo develops in a closed...

    Authors: Angélique Petit, Sophie Tesseraud, Anne Collin, Nathalie Couroussé, Cécile Berri, Elisabeth Le Bihan-Duval and Sonia Métayer-Coustard
    Citation: BMC Genomics 2024 25:438
  28. The genus Silene is widely used as a model system for addressing ecological and evolutionary questions in plants, but advances in using the genus as a model system are impeded by the lack of available resources f...

    Authors: Nicolas Blavet, Delphine Charif, Christine Oger-Desfeux, Gabriel AB Marais and Alex Widmer
    Citation: BMC Genomics 2011 12:376
  29. Birds have various plumage color patterns, and spot is a common phenotype. Herein, we conducted genome-wide association studies (GWAS) in a population of 225 ducks with different sized black spots to reveal th...

    Authors: Yang Xi, Qian Xu, Qin Huang, Shengchao Ma, Yushi Wang, Chunchun Han, Rongping Zhang, Jiwen Wang, Hehe Liu and Liang Li
    Citation: BMC Genomics 2021 22:381
  30. The emergence of multidrug-resistant Klebsiella pneumoniae is a major public health concern. Many K. pneumoniae infections can only be treated when resorting to last-line drugs such as polymyxin B (PB). However, ...

    Authors: Pablo Ivan Pereira Ramos, Márlon Grégori Flores Custódio, Guadalupe del Rosario Quispe Saji, Thiago Cardoso, Gisele Lucchetti da Silva, Graziela Braun, Willames M. B. S. Martins, Raquel Girardello, Ana Tereza Ribeiro de Vasconcelos, Elmer Fernández, Ana Cristina Gales and Marisa Fabiana Nicolás
    Citation: BMC Genomics 2016 17(Suppl 8):737

    This article is part of a Supplement: Volume 17 Supplement 8

  31. Microsporidia are diverse spore forming, fungal-related obligate intracellular pathogens infecting a wide range of hosts. This diversity is reflected at the genome level with sizes varying by an order of magni...

    Authors: Anne Caroline Mascarenhas dos Santos, Alexander Thomas Julian, Pingdong Liang, Oscar Juárez and Jean-François Pombert
    Citation: BMC Genomics 2023 24:237
  32. Several individual studies have suggested that autosomal CpG methylation differs by sex both in terms of individual CpG sites and global autosomal CpG methylation. However, these findings have been inconsisten...

    Authors: Nina S McCarthy, Phillip E Melton, Gemma Cadby, Seyhan Yazar, Maria Franchina, Eric K Moses, David A Mackey and Alex W Hewitt
    Citation: BMC Genomics 2014 15:981
  33. Read coverage of RNA sequencing data reflects gene expression and RNA processing events. Single-cell RNA sequencing (scRNA-seq) methods, particularly “full-length” ones, provide read coverage of many individua...

    Authors: Haruka Ozaki, Tetsutaro Hayashi, Mana Umeda and Itoshi Nikaido
    Citation: BMC Genomics 2020 21:177
  34. Powdery mildew (PM) is one of the most important and widespread plant diseases caused by biotrophic fungi. Notably, while monocot (grass) PM fungi exhibit high-level of host-specialization, many dicot PM fungi...

    Authors: Ying Wu, Xianfeng Ma, Zhiyong Pan, Shiv D. Kale, Yi Song, Harlan King, Qiong Zhang, Christian Presley, Xiuxin Deng, Cheng-I Wei and Shunyuan Xiao
    Citation: BMC Genomics 2018 19:705
  35. Control and elimination of schistosomiasis is an arduous task, with current strategies proving inadequate to break transmission. Exploration of genetic approaches to interrupt Schistosoma mansoni transmission, th...

    Authors: Tom Pennance, Javier Calvelo, Jacob A. Tennessen, Ryan Burd, Jared Cayton, Stephanie R. Bollmann, Michael S. Blouin, Johannie M. Spaan, Federico G. Hoffmann, George Ogara, Fredrick Rawago, Kennedy Andiego, Boaz Mulonga, Meredith Odhiambo, Eric S. Loker, Martina R. Laidemitt…
    Citation: BMC Genomics 2024 25:192
  36. Wild plants of Vitis closely related to the cultivated grapevine (V. v. vinifera) are believed to have been first domesticated 10,000 years BC around the Caspian Sea. V. v. vinifera is hermaphrodite whereas V. v....

    Authors: Miguel Jesus Nunes Ramos, João Lucas Coito, Helena Gomes Silva, Jorge Cunha, Maria Manuela Ribeiro Costa and Margarida Rocheta
    Citation: BMC Genomics 2014 15:1095
  37. Grouper (Epinephelus spp) is an economically important fish species worldwide. However, viral pathogens such as nervous necrosis virus (NNV) have been causing severe infections in the fish, resulting in great los...

    Authors: Ming-Wei Lu, Fang-Huar Ngou, Yung-Mei Chao, Yu-Shen Lai, Nai-Yu Chen, Fan-Yao Lee and Pinwen P Chiou
    Citation: BMC Genomics 2012 13:651
  38. The soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two comme...

    Authors: Arthur Fernandes Siqueira, Ernesto Ormeño-Orrillo, Rangel Celso Souza, Elisete Pains Rodrigues, Luiz Gonzaga Paula Almeida, Fernando Gomes Barcellos, Jesiane Stefânia Silva Batista, Andre Shigueyoshi Nakatani, Esperanza Martínez-Romero, Ana Tereza Ribeiro Vasconcelos and Mariangela Hungria
    Citation: BMC Genomics 2014 15:420
  39. Rhs genes are prominent features of bacterial genomes that have previously been implicated in genomic rearrangements in E. coli. By comparing rhs repertoires across the Enterobacteriaceae, this study provides a r...

    Authors: Andrew P Jackson, Gavin H Thomas, Julian Parkhill and Nicholas R Thomson
    Citation: BMC Genomics 2009 10:584
  40. Wild rice, including Oryza nivara and Oryza rufipogon, which are considered as the ancestors of Asian cultivated rice (Oryza sativa), possess high genetic diversity and serve as a crucial resource for breeding no...

    Authors: Yong-Chao Xu, Jie Zhang, Dong-Yan Zhang, Ying-Hui Nan, Song Ge and Ya-Long Guo
    Citation: BMC Genomics 2021 22:424
  41. WUSCHEL (WUS)-related homeobox (WOX) protein family members play important roles in the maintenance and proliferation of the stem cell niche in the shoot apical meristem (SAM), root apical meristem (RAM), and ...

    Authors: Bobin Liu, Lin Wang, Jin Zhang, Jianbo Li, Huanquan Zheng, Jun Chen and Mengzhu Lu
    Citation: BMC Genomics 2014 15:296
  42. Paenarthrobacter nicotinovorans ATCC 49919 uses the pyridine-pathway to degrade nicotine and could provide a renewable source of precursors from nicotine-containing waste as well as a model for studying the molec...

    Authors: Amada El-Sabeh, Andreea-Mihaela Mlesnita, Iustin-Tiberius Munteanu, Iasmina Honceriu, Fakhri Kallabi, Razvan-Stefan Boiangiu and Marius Mihasan
    Citation: BMC Genomics 2023 24:536
  43. Serogroup A Neisseria meningitidis (NmA) was the cause of the 2011 meningitis epidemics in Chad. This bacterium, often carried asymptomatically, is considered to be an “accidental pathogen”; however, the transiti...

    Authors: Kanny Diallo, Kadija Gamougam, Doumagoum M. Daugla, Odile B. Harrison, James E. Bray, Dominique A. Caugant, Jay Lucidarme, Caroline L. Trotter, Musa Hassan-King, James M. Stuart, Olivier Manigart, Brian M. Greenwood and Martin C. J. Maiden
    Citation: BMC Genomics 2017 18:398
  44. The Lundehund is a highly specialized breed characterized by a unique flexibility of the joints and polydactyly in all four limbs. The extremely small population size and high inbreeding has promoted a high fr...

    Authors: Julia Metzger, Sophia Pfahler and Ottmar Distl
    Citation: BMC Genomics 2016 17:535
  45. Polysaccharides often are necessary components of bacterial biofilms and capsules. Production of these biopolymers constitutes a drain on key components in the central carbon metabolism, but so far little is k...

    Authors: Helga Ertesvåg, Håvard Sletta, Mona Senneset, Yi-Qian Sun, Geir Klinkenberg, Therese Aursand Konradsen, Trond E. Ellingsen and Svein Valla
    Citation: BMC Genomics 2017 18:11
  46. Cholesterol homeostasis and xenobiotic metabolism are complex biological processes, which are difficult to study with traditional methods. Deciphering complex regulation and response of these two processes to ...

    Authors: Tadeja Režen, Peter Juvan, Klementina Fon Tacer, Drago Kuzman, Adrian Roth, Denis Pompon, Lawrence P Aggerbeck, Urs A Meyer and Damjana Rozman
    Citation: BMC Genomics 2008 9:76
  47. The ATP-binding cassette (ABC) transporters belong to a large superfamily of proteins that have important physiological functions in all living organisms. Most are integral membrane proteins that transport a b...

    Authors: Gunnar Broehan, Tobias Kroeger, Marcé Lorenzen and Hans Merzendorfer
    Citation: BMC Genomics 2013 14:6
  48. Aphid adaptation to harsh winter conditions is illustrated by an alternation of their reproductive mode. Aphids detect photoperiod shortening by sensing the length of the night and switch from viviparous parth...

    Authors: G Le Trionnaire, F Francis, S Jaubert-Possamai, J Bonhomme, E De Pauw, J-P Gauthier, E Haubruge, F Legeai, N Prunier-Leterme, J-C Simon, S Tanguy and D Tagu
    Citation: BMC Genomics 2009 10:456

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