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  1. The deep-sea snail Phymorhynchus buccinoides belongs to the genus Phymorhynchus (Neogastropoda: Raphitomidae), and it is a dominant specie in the cold seep habitat. As the environment of the cold seep is characte...

    Authors: Zhaoqun Liu, Yuting Huang, Hao Chen, Chang Liu, Minxiao Wang, Chao Bian, Lingling Wang and Linsheng Song
    Citation: BMC Genomics 2023 24:679
    Content type: Research Published on:

  2. High oncogene expression in cancer cells is a major cause of rapid tumor progression and drug resistance. Recent cancer genome research has shown that oncogenes as well as regulatory elements can be amplified ...

    Authors: Hansen Cheng, Wenhao Ma, Kun Wang, Han Chu, Guangchao Bao, Yu Liao, Yawen Yuan, Yixiong Gou, Liting Dong, Jian Yang and Haoyang Cai
    Citation: BMC Genomics 2023 24:678
    Content type: Software Published on:

  3. Macrobrachium amazonicum is a freshwater prawn widely distributed in South America that is undergoing speciation, so the denomination “M. amazonicum complex” is used for it. The mitochondrial cytochrome c oxidase...

    Authors: Jerônimo Costa Marques-Neto, Gabriel Monteiro de Lima, Carlos Murilo Tenório Maciel, Bruna Ramalho Maciel, Fernando Araujo Abrunhosa, Iracilda Sampaio and Cristiana Ramalho Maciel
    Citation: BMC Genomics 2023 24:677
    Content type: Research Published on:

  4. More and more studies show that lncRNA is widely involved in various physiological processes of the organism. However, the functions of the vast majority of them continue to be unknown. In addition, data relat...

    Authors: Lei Deng, Shengli Ren and Jingpu Zhang
    Citation: BMC Genomics 2023 23(Suppl 6):865
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 6

  5. The rapid devolvement of single cell RNA sequencing (scRNA-seq) technology leads to huge amounts of scRNA-seq data, which greatly advance the research of many biomedical fields involving tissue heterogeneity, ...

    Authors: Ruiyi Li, Jihong Guan, Zhiye Wang and Shuigeng Zhou
    Citation: BMC Genomics 2023 23(Suppl 6):864
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 6

  6. Poplar (Populus cathayana)and willow (Salix rehderiana) are important fast-growing trees in China. Grafting plays an important role in improving plant stress resistance and construction of ornamental plants. It i...

    Authors: Le Yang, Yao Chen, Xuejiao Liu, Sheng Zhang and Qingquan Han
    Citation: BMC Genomics 2023 24:676
    Content type: Research Published on:

  7. Epilepsy is a prevalent neurological disorder, and while its precise mechanism remains elusive, a connection to ferroptosis has been established. This study investigates the potential clinical diagnostic signi...

    Authors: Shihao Chen, Xing Jin, Tao He, Mulan Zhang and Huiqin Xu
    Citation: BMC Genomics 2023 24:675
    Content type: Research Published on:

  8. Gene expression profiles have important significance for gene expression characteristics and further functional studies. More attention has been given to the expression databases in humans and mice, but less a...

    Authors: Yuzhe Hu, Dong Xie, Xixi Li, Wenling Han, Yingyu Chen, Huiying Qi and Pingzhang Wang
    Citation: BMC Genomics 2023 24:674
    Content type: Database Published on:

  9. Juglans sigillata L. (walnut) has a high economic value for nuts and wood and has been widely grown and eaten around the world. Light plays an important role in regulating the development of the walnut embryo and...

    Authors: Shengqun Chen, Yingfu Chen, Mei Liang, Shuang Qu, Lianwen Shen, Yajun Zeng and Na Hou
    Citation: BMC Genomics 2023 24:673
    Content type: Research Published on:

  10. Genomic variants of the disease are often discovered nowadays through population-based genome-wide association studies (GWAS). Identifying genomic variations potentially underlying a phenotype, such as hyperte...

    Authors: Md Asad Rahman, Chunhui Cai, Na Bo, Dennis M. McNamara, Ying Ding, Gregory F. Cooper, Xinghua Lu and Jinling Liu
    Citation: BMC Genomics 2023 23(Suppl 5):863
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 5

  11. Sino-Tibetan is the most prominent language family in East Asia. Previous genetic studies mainly focused on the Tibetan and Han Chinese populations. However, due to the sparse sampling, the genetic structure a...

    Authors: Jinwen Chen, Han Zhang, Meiqing Yang, Rui Wang, Hongling Zhang, Zheng Ren, Qiyan Wang, Yubo Liu, Jing Chen, Jingyan Ji, Jing Zhao, Guanglin He, Jianxin Guo, Kongyang Zhu, Xiaomin Yang, Hao Ma…
    Citation: BMC Genomics 2023 24:672
    Content type: Research Published on:

  13. Broodstock nutritional programming improves the offspring utilization of plant-based diets in gilthead sea bream through changes in hepatic metabolism. Attention was initially focused on fatty acid desaturases...

    Authors: F. Naya-Català, A. Belenguer, D. Montero, S. Torrecillas, B. Soriano, J. Calduch-Giner, C. Llorens, R. Fontanillas, S. Sarih, M. J. Zamorano, M. Izquierdo and J. Pérez-Sánchez
    Citation: BMC Genomics 2023 24:670
    Content type: Research Published on:

  15. The Gibberellic Acid-Stimulated Arabidopsis (GASA) gene family is widely involved in the regulation of plant growth, development, and stress response. However, information on the GASA gene family has not been rep...

    Authors: Bingxin Sun, Xianlei Zhao, Jiahui Gao, Jie Li, Yue Xin, Yonghui Zhao, Zhiyong Liu, Hui Feng and Chong Tan
    Citation: BMC Genomics 2023 24:668
    Content type: Research Published on:

  16. The gut microbiota is considered a rich source for potential novel probiotics. Enterococcus genus is a normal component of a healthy gut microbiota, suggesting its vital role. Nosocomial infections caused mainly ...

    Authors: Noha A. Ahmed, Rania Abdelmonem Khattab, Yasser M. Ragab and Mariam Hassan
    Citation: BMC Genomics 2023 24:667
    Content type: Research Published on:

  17. The concept of the functional nutritional value of health-beneficial omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) is becoming a phenomenon among red meat consumers globally. This study examined...

    Authors: John Roger Otto, Shedrach Benjamin Pewan, Richard Crawford Edmunds, Felista Waithira Mwangi, Robert Tumwesigye Kinobe, Oyelola Abdulwasiu Adegboye and Aduli Enoch Othniel Malau-Aduli
    Citation: BMC Genomics 2023 24:666
    Content type: Research Published on:

  18. Tree peony (Paeonia sect. Moutan DC.) is a famous flower native to China with high ornamental, medicinal, and oil value. However, the low regeneration rate of callus is one of the main constraints for the establi...

    Authors: Wanqing Zhang, Hongxiao Zhang, Guodong Zhao, Na Wang, Lili Guo and Xiaogai Hou
    Citation: BMC Genomics 2023 24:665
    Content type: Research Published on:

  22. Microproteins, prevalent across all kingdoms of life, play a crucial role in cell physiology and human health. Although global gene transcription is widely explored and abundantly available, our understanding ...

    Authors: Bowen Zhao, Jing Zhao, Muyao Wang, Yangfan Guo, Aamir Mehmood, Weibin Wang, Yi Xiong, Shenggan Luo, Dong-Qing Wei, Xin-Qing Zhao and Yanjing Wang
    Citation: BMC Genomics 2023 24:661
    Content type: Database Published on:

  23. Milk production traits are complex traits with vital economic importance in the camel industry. However, the genetic mechanisms regulating milk production traits in camels remain poorly understood. Therefore, ...

    Authors: Huaibing Yao, Zhihua Dou, Zhongkai Zhao, Xiaorui Liang, Haitao Yue, Wanpeng Ma, Zhanqiang Su, Yuzhuo Wang, Zelin Hao, Hui Yan, Zhuangyuan Wu, Liang Wang, Gangliang Chen and Jie Yang
    Citation: BMC Genomics 2023 24:660
    Content type: Research Published on:

  24. As an important vegetable crop, cultivated lettuce is grown worldwide and a great variety of agronomic traits have been preserved within germplasm collections. The mechanisms underlying these phenotypic variat...

    Authors: Zhaowu Zhang, Rob van Treuren, Ting Yang, Yulan Hu, Wenhui Zhou, Huan Liu and Tong Wei
    Citation: BMC Genomics 2023 24:659
    Content type: Research Published on:

  25. Wolfberry is rich in carotenoids, flavonoids, vitamins, alkaloids, betaines and other bioactive ingredients. For over 2,000 years, wolfberry has been used in China as a medicinal and edible plant resource. Nev...

    Authors: Xuexia Liu, Rui Zheng, Yasmina Radani, Han Gao, Sijun Yue, Wenqiang Fan, Jianning Tang, Jing Shi and Jinzhong Zhu
    Citation: BMC Genomics 2023 24:658
    Content type: Research Published on:

  26. Wolbachia is a genus of maternally inherited endosymbionts that can affect reproduction of their hosts and influence metabolic processes. The pollinator, Valisia javana, is common in the male syconium of the dioe...

    Authors: Wanzhen Liu, Xue Xia, Ary A. Hoffmann, Yamei Ding, Ji-Chao Fang and Hui Yu
    Citation: BMC Genomics 2023 24:657
    Content type: Research Published on:

  27. To date genomic studies on Map have concentrated on Type C strains with only a few Type S strains included for comparison. In this study the entire pan-genome of 261 Map genomes (205 Type C, 52 Type S and 4 Ty...

    Authors: Rachel Hodgeman, Rachel Mann, Noel Djitro, Keith Savin, Simone Rochfort and Brendan Rodoni
    Citation: BMC Genomics 2023 24:656
    Content type: Research Published on:

  28. Declining oocyte quality in women with advanced age has been a major impediment to assisted reproductive treatments’ (ART) success rate. However, aging is often accompanied by a diminished ovarian reserve (DOR...

    Authors: Cong Zhang, Shi Song, Ming Yang, Liying Yan and Jie Qiao
    Citation: BMC Genomics 2023 24:655
    Content type: Research Published on:

  30. Authors: Yuuki Kobayashi, Ayane Kayamori, Keita Aoki, Yuh Shiwa, Minenosuke Matsutani, Nobuyuki Fujita, Takashi Sugita, Wataru Iwasaki, Naoto Tanaka and Masako Takashima
    Citation: BMC Genomics 2023 24:653
    Content type: Correction Published on:

    The original article was published in BMC Genomics 2023 24:609

  32. Mapping genetic interactions is essential for determining gene function and defining novel biological pathways. We report a simple to use CRISPR interference (CRISPRi) based platform, compatible with Fluoresce...

    Authors: Alina Guna, Katharine R. Page, Joseph M. Replogle, Theodore K. Esantsi, Maxine L. Wang, Jonathan S. Weissman and Rebecca M. Voorhees
    Citation: BMC Genomics 2023 24:651
    Content type: Research Published on:

  34. The Kazakhs are one of the biggest Turkic-speaking ethnic groups, controlling vast swaths of land from the Altai to the Caspian Sea. In terms of area, Kazakhstan is ranked ninth in the world. Northern, Eastern...

    Authors: Yeldar Ashirbekov, Madina Seidualy, Arman Abaildayev, Albina Maxutova, Aigul Zhunussova, Ainur Akilzhanova, Kamalidin Sharipov, Zhaxylyk Sabitov and Maxat Zhabagin
    Citation: BMC Genomics 2023 24:649
    Content type: Research Published on:

  35. The Begonia species are common shade plants that are mostly found in southwest China. They have not been well studied despite their medicinal and decorative uses because gene penetration, decreased adaptability, ...

    Authors: Chao Xiong, Yang Huang, Zhenglong Li, Lan Wu, Zhiguo Liu, Wenjun Zhu, Jianhui Li, Ran Xu and Xin Hong
    Citation: BMC Genomics 2023 24:648
    Content type: Research Published on:

  36. Feed efficiency is a research priority to support a sustainable meat production. It is recognized as a complex trait that integrates multiple biological pathways orchestrated in and by various tissues. This st...

    Authors: Camille Juigné, Emmanuelle Becker and Florence Gondret
    Citation: BMC Genomics 2023 24:647
    Content type: Research Published on:

  37. The mammalian oviduct is a complex, fibromuscular organ known for its role in orchestrating a series of timely and dynamic changes to suitably support early embryogenesis. Climate change-induced heat stress (H...

    Authors: Nico G. Menjivar, Ahmed Gad, Riley E. Thompson, Mindy A. Meyers, Fiona K. Hollinshead and Dawit Tesfaye
    Citation: BMC Genomics 2023 24:646
    Content type: Research Published on:

  38. Takifugu fasciatus is an aquaculture species with high economic value. In recent years, problems such as environmental pollution and inbreeding have caused a serious decline in T. fasciatus germplasm resources. I...

    Authors: Ying Zhang, Jie Li, Peng Chu, Ruhua Shang, Shaowu Yin and Tao Wang
    Citation: BMC Genomics 2023 24:645
    Content type: Research Published on:

  39. Understanding changes in cell identity in cancer and ageing is of great importance. In this work, we analyzed how gene expression changes in human tissues are associated with tissue specificity during cancer a...

    Authors: Gabriel Arantes dos Santos, Kasit Chatsirisupachai, Roberto A. Avelar and João Pedro de Magalhães
    Citation: BMC Genomics 2023 24:644
    Content type: Research Published on:

  40. Long non-coding RNAs (lncRNAs) play critical roles in various biological processes in plants. Extensive studies utilizing high-throughput RNA sequencing have revealed that many lncRNAs are involved in plant di...

    Authors: Minghua Li, Wei Li, Meixia Zhao, Zhiqiang Li, Guo-Liang Wang, Wende Liu and Chun Liang
    Citation: BMC Genomics 2023 24:643
    Content type: Research Published on:

  41. Barley (Hordeum vulgare) is one of the most popular cereal crops globally. Although it is a diploid species, (2n = 2x = 14) the study of its genome organization is necessary in the framework of plant breeding sin...

    Authors: I. M. Serrano-León, P. Prieto and M. Aguilar
    Citation: BMC Genomics 2023 24:642
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2023 24:694

  42. MicroRNAs (miRNAs) are important post-transcriptional gene regulators controlling cellular lineage specification and differentiation during embryonic development, including the gastrointestinal system. However...

    Authors: Yu-Han Hung, Meghan Capeling, Jonathan W. Villanueva, Matt Kanke, Michael T. Shanahan, Sha Huang, Rebecca Cubitt, Vera D. Rinaldi, John C. Schimenti, Jason R. Spence and Praveen Sethupathy
    Citation: BMC Genomics 2023 24:641
    Content type: Research Published on:

  43. The study was conducted to find out the candidate microRNA (miRNA) and genes that associated with sperm motility of Yili goose through small RNA sequencing of testicular tissue of Yili goose, and provide a the...

    Authors: Yingping Wu, Lihua Zhang, Haiying Li, Xiaoyu Zhao, Yawen Ding, Yingying Yao and Ling Wang
    Citation: BMC Genomics 2023 24:640
    Content type: Research Published on:

  44. Microbes live within complex communities of interacting populations, either free-living in waters and soils or symbionts of animals and plants. Their interactions include the production of antimicrobial peptid...

    Authors: Claudia Teso-Pérez, Manuel Martínez-Bueno, Juan Manuel Peralta Sánchez, Eva Valdivia, María Esther Fárez-Vidal and Antonio Manuel Martín-Platero
    Citation: BMC Genomics 2023 24:639
    Content type: Research Published on:

  45. Although it is known that variation in the aldehyde dehydrogenase 2 (ALDH2) gene family influences the East Asian alcohol flushing response, knowledge about other genetic variants that affect flushing symptoms is...

    Authors: Yoonsu Cho, Kuang Lin, Su-Hyun Lee, Canqing Yu, Dan Schmidt Valle, Daniel Avery, Jun Lv, Keumji Jung, Liming Li, George Davey Smith, China Kadoorie Biobank Collaborative Group, Dianjianyi Sun, Zhengming Chen, Iona Y. Millwood, Gibran Hemani and Robin G. Walters
    Citation: BMC Genomics 2023 24:638
    Content type: Research Published on:

  46. Polyadenylation is a crucial process that terminates mRNA molecules at their 3′-ends. It has been observed that alternative polyadenylation (APA) can generate multiple transcripts from a single gene locus, eac...

    Authors: Zhenying Peng, Shuang Yu, Jingjing Meng, Kai-Hua Jia, Jialei Zhang, Xinguo Li, Wenwei Gao and Shubo Wan
    Citation: BMC Genomics 2023 24:637
    Content type: Research Published on:

  47. Insects are an important reservoir of viral biodiversity, but the vast majority of viruses associated with insects have not been discovered. Recent studies have employed high-throughput RNA sequencing, which h...

    Authors: Paula Rozo-Lopez, William Brewer, Simon Käfer, McKayla M. Martin and Benjamin J. Parker
    Citation: BMC Genomics 2023 24:636
    Content type: Research Published on:

  48. With the promotion of “One Health,” the health of animals and their impact on the environment have become major concerns recently. Widely distributed in China, the whooper swans (Cygnus cygnus) and black swans (C...

    Authors: Yin Fu, Kaihui Zhang, Fa Shan, Junqiang Li, Yilin Wang, Xiaoying Li, Huiyan Xu, Ziyang Qin and Longxian Zhang
    Citation: BMC Genomics 2023 24:635
    Content type: Research Published on:

  49. Exploring evolution regularities of genome sequences and constructing more objective species evolution relationships at the genomic level are high-profile topics. Based on the evolution mechanism of genome seq...

    Authors: Xiaolong Li, Hong Li, Zhenhua Yang, Yuan Wu and Mengchuan Zhang
    Citation: BMC Genomics 2023 24:634
    Content type: Research Published on:

  50. Host genetics influences the development of infectious diseases in many agricultural animal species. Identifying genes associated with disease development has the potential to make selective breeding for disea...

    Authors: Konstantin Divilov, Noah Merz, Blaine Schoolfield, Timothy J. Green and Chris Langdon
    Citation: BMC Genomics 2023 24:631
    Content type: Research Published on:

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BMC Genomics

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