Nys Y, Hincke M, Arias JL, Garcia-Ruiz JM, Solomon S. Avian Eggshell Mineralization. Poultr Avian Biol Rev. 1999;10:143–66.
Arias JL, Fink DJ, Xiao SQ, Heuer AH, Caplan AI. Biomineralization and eggshells: cell-mediated a cellular compartments of mineralized extracellular matrix. Int Rev Cytol. 1993;45:217–50.
Nys Y, Gautron J, Garcia-Ruiz JM, Hincke MT. Avian eggshell mineralization: biochemical and functional characterization of matrix proteins. Comptes Rend Paleovol. 2004;3:549–62.
Hincke MT, Gautron J, Panheleux M, Garcia-Ruiz J, McKee MD, Nys Y. Identification and localization of lysozyme as a component of eggshell membranes and eggshell matrix. Matrix Biol. 2000;19:443–53.
Rodríguez-Navarro AB, Marie P, Nys Y, Hincke MT, Gautron J. Amorphous calcium carbonate controls avian eggshell mineralization: a new paradigm for understanding rapid eggshell calcification. J Struct Biol. 2015;190:291–303.
Marie P, Labas V, Brionne A, Harichaux G, Hennequet-Antier C, Rodriguez-Navarro AB, et al. Quantitative proteomics provides new insights into chicken eggshell matrix protein functions during the primary events of mineralisation and the active calcification phase. J Proteomics. 2015;126:140–54.
Rose-Martel M, Smiley S, Hincke MT. Novel identification of matrix proteins involved in calcitic biomineralization. J Proteomics. 2015;116:81–96.
Bain MM. Eggshell strength: A relationship between the mechanism of failure and the ultrastructural organisation of the mammillary layer. Brit Poultr Sci. 1992;33:303–19.
García-Ruiz JM, Navarro-Rodriguez A, Kälin O. Textural analysis of eggshells. Mater Sci Eng C. 1995;3:95–100.
Hincke MT, Nys Y, Gautron J, Mann K, Rodriguez-Navarro AB, McKee MD. The eggshell: structure, composition and mineralization. Front Biosci. 2012;17:1266–80.
Dunn IC, Rodríguez-Navarro AB, Mcdade K, Schmutz M, Preisinger R, Waddington D, et al. Genetic variation in eggshell crystal size and orientation is large and these traits are correlated with shell thickness and are associated with eggshell matrix protein markers. Anim Genet. 2012;43:410–8.
Chowdhury SD, Davis RH. Influence of dietary osteolathyrogens on the ultrastructure of shell and membranes of eggs from laying hens. Br Poult Sci. 1995;36:575–83.
Arias JL, Cataldo M, Fernandez MS, Kessi E. Effect of beta-aminoproprionitrile on eggshell formation. Br Poult Sci. 1997;38:349–54.
Chowdhury SD, Davis RH. Influence of dietary osteolathyrogens on the eggshell quality of laying hens. Br Poult Sci. 1998;39:497–9.
Chowdury SD. Shell membrane system in relationship to lathrogen toxicity and copper deficiency. World poultr Sci J. 1990;46:153–69.
Cordeiro C, Hincke MT. Eggshell: Shell and Membranes Applications. Recent Pat Food, Nutr Agric. 2010;3:1–8.
Cordeiro CMM, Hincke MT. Quantitative proteomics analysis of eggshell membrane proteins during chick embryonic development. J Proteomics. 2015;S1874–3919:30104–4.
Kodali VK, Gannon SA, Paramasivam S, Raje S, Polenova T, Thorpe C. A novel disulfide-rich protein motif from avian eggshell membranes. PLoS One. 2011;6, e18187.
Kaweewong K, Garnjanagoonchorn W, Jirapakkul W, Roytrakul S. Solubilization and identification of hen eggshell membrane proteins during different times of chicken embryo development using the proteomic approach. Protein J. 2013;32:297–308.
Guioli S, Sekido R, Lovell-Badge R. The origin of the Mullerian duct in chick and mouse. Dev Biol. 2007;302:389–98.
Jonchère V, Réhault-Godbert S, Hennequet-Antier C, Cabau C, Sibut V, Cogburn LA, et al. Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg. BMC Genomics. 2010;11:57.
Jonchère V, Brionne AB, Gautron J, Nys Y. Identification of uterine ion transporters for mineralisation precursors of the avian eggshell. BMC Physiol. 2012;12:10.
Brionne A, Nys Y, Hennequet-Antier C, Gautron J. Hen uterine gene expression profiling during eggshell formation reveals putative proteins involved in the supply of minerals or in the shell mineralization process. BMC Genomics. 2014;15:220–36.
Cogburn LA, Wang X, Carre W, Rejto L, Aggrey SE, Duclos MJ, et al. Functional genomics in chickens: development of integrated- systems microarrays for transcriptional profiling and discovery of regulatory pathways. Comp Funct Genomics. 2004;5:253–61.
Draper MH, Davidson MF, Wyburn GM, Johnston HS. The fine structure of the fibrous membrane forming region of the isthmus of the oviduct of gallus domesticus. Quart J Exp Physiol. 1972;5:297–309.
Richardson KC. The secretory phenomena in the oviduct of the fowl, including the process of shell formation examined by the microincineration technique. Phil Trans R Soc Lond B. 1935;225:149–94.
Arias JL, Nakamura O, Fernandez MS, Wu JJ, Knigge P, Eyre DR, et al. Role of type X collagen on experimental mineralization of eggshell membranes. Connect Tissue Res. 1997;36:21–33.
Fernandez MS, Araya M, Arias JL. Eggshells are shaped by a precise spatio-temporal arrangement of sequentially deposited macromolecules. Matrix Biol. 1997;16:13–20.
Fernandez MS, Moya A, Lopez L, Arias JL. Secretion pattern, ultrastructural localization and function of extracellular matrix molecules involved in eggshell formation. Matrix Biol. 2001;19:793–803.
Wong M, Hendrix MJC, Von der Mark K, Little C, Stern R. Collagen in the eggshell membranes of the hen. Dev Biol. 1984;104:28–36.
Arias JL, Fernandez MS, Dennis JE, Caplan AI. Collagens of the chicken eggshell membranes. Connect Tissue Res. 1991;26:37–45.
Wang X, Ford BC, Praul CA, Leach Jr RM. Collagen X expression in oviduct tissue during the different stages of the egg laying cycle. Poult Sci. 2002;81:805–8.
Marie P, Labas V, Brionne A, Harichaux G, Hennequet-Antier C, Nys Y, et al. Quantitative proteomics and bioinformatic analysis provide new insight into protein function during avian eggshell biomineralization. J Proteomics. 2015;113:178–93.
Miksík I, Sedláková P, Lacinová K, Pataridis S, Eckhardt A. Determination of insoluble avian eggshell matrix proteins. Anal Bioanal Chem. 2010;97:205–14.
Mann K, Macek B, Olsen JV. Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer. Proteomics. 2006;6:3801–10.
Harris ED, Blount JE, Leach Jr RM. Localization of lysyl oxidase in hen oviduct: Implications in egg shell membrane formation and composition. Science. 1980;208:55–6.
Akagawa M, Wako Y, Suyama K. Lysyl oxidase coupled with catalase in egg shell membrane. Biochim Biophys Acta. 1999;1434:151–60.
Sun C, Xu G, Yang N. Differential label‐free quantitative proteomic analysis of avian eggshell matrix and uterine fluid proteins associated with eggshell mechanical property. Proteomics. 2013;13:3523–36.
Bassuk JA, Kao WW, Herzer P, Kedersha NL, Seyer J, DeMartino JA, et al. Prolyl 4-hydroxylase: molecular cloning and the primary structure of the alpha subunit from chicken embryo. Proc Natl Acad Sci U S A. 1989;86:7382–6.
Annunen P, Helaakoski T, Myllyharju J, Veijola J, Pihlajaniemi T, Kivirikko KI. Cloning of the human prolyl 4-hydroxylase alpha subunit isoform alpha(II) and characterization of the type II enzyme tetramer. The alpha(I) and alpha(II) subunits do not form a mixed alpha(I)alpha(II)beta2 tetramer. J Biol Chem. 1997;272:17342–8.
Bächinger HP. The influence of peptidyl-prolyl cis-trans isomerase on the in vitro folding of type III collagen. J Biol Chem. 1987;262:17144–8.
Piha-Gossack A, Sossin W, Reinhardt DP. The evolution of extracellular fibrillins and their functional domains. PLoS One. 2012;7, e33560.
Sakai LY, Keene DR, Glanville RW, Bachinger HP. Purification and partial characterization of fibrillin, a cysteine-rich structural component of connective tissue microfibrils. J Biol Chem. 1991;266:14763–70.
Corson GM, Chalberg SC, Dietz HC, Charbonneau NL, Sakai LY. Fibrillin binds calcium and is coded by cDNAs that reveal a multidomain structure and alternatively spliced exons at the 5-prime end. Genomics. 1993;17:476–84.
West CM, Mao J, van der Wel H, Erdos GW, Zhang Y. SP75 is encoded by the DP87 gene and belongs to a family of modular Dictyostelium discoideum outer layer spore coat proteins. Microbiol. 1996;142:2227–43.
Holmgren A. Thioredoxin and glutaredoxin systems. J Biol Chem. 1989;264:13963–6.
Hoober KL, Joneja B, White III HB, Thorpe C. A Sulfhydryl Oxidase from Chicken Egg White. J Biol Chem. 1996;271:30510–6.
Alon A, Grossman I, Gat Y, Kodali VK, DiMaio F, Mehlman T, et al. The dynamic disulphide relay of quiescin sulphydryl oxidase. Nature. 2012;488:414–8.
Mann K. Proteomic analysis of the chicken egg vitelline membrane. Proteomics. 2008;8:2322–2332.49.
Mann K, Olsen JV, Macek B, Gnad F, Mann M. Phosphoproteins of the chicken eggshell calcified layer. Proteomics. 2007;7:106–15.
Mann K. The chicken egg white proteome. Proteomics. 2007;7:3558–68.
Mann K, Mann M. In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos. Proteome Sci. 2011;9:7.
Ilani T, Alon A, Grossman I, Horowitz B, Kartvelishvity E, Cohen SR, et al. A secreted disulfide catalyst controls extracellular matrix composition and function. Science. 2013;341:74–6.
Harada N, Iijima S, Kobayashi K, Yoshida T, Brown WR, Hibi T, et al. Human IgGFc binding protein (FcgammaBP) in colonic epithelial cells exhibits mucin-like structure. J Biol Chem. 1997;272:15232–41.
Schreiber-Agus N, Meng Y, Hoang T, Hou Jr H, Chen K, Greenberg R, et al. Role of Mxi1 in ageing organ systems and the regulation of normal and neoplastic growth. Nature. 1998;393:483–7.
Krause A, Zacharias W, Camarata T, Linkhart B, Law E, Lischke A, et al. Tbx5 and Tbx4 transcription factors interact with a new chicken PDZ-LIM protein in limb and heart development. Dev Biol. 2004;273:106–20.
Tabatabaie L, de Koning TJ, Geboers AJ, van den Berg IE, Berger R, Klomp LW. Novel mutations in 3-phosphoglycerate dehydrogenase (PHGDH) are distributed throughout the protein and result in altered enzyme kinetics. Hum Mutat. 2009;30:749–56.
El-Kabbani O, Darmanin C, Chung RP. Sorbitol dehydrogenase: structure, function and ligand design. Curr Med Chem. 2004;11:465–76.
Tolosano E, Altruda F. Hemopexin: structure, function, and regulation. DNA Cell Biol. 2002;21:297–306.
Shoji M, Tanaka T, Hosokawa M, Reuter M, Stark A, Kato Y, et al. The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline. Dev Cell. 2009;17:775–87.
Shiba Y, Takatsu H, Shin HW, Nakayama K. Gamma-adaptin interacts directly with Rabaptin-5 through its ear domain. J Biochem. 2002;131:327–36.
Hincke MT, Gautron J, Tsang CPW, McKee MD, Nys Y. Molecular cloning and ultrastructural localization of the core protein of an eggshell matrix proteoglycan, Ovocleidin-116. J Biol Chem. 1999;274:32915–23.
Lind T, McKie N, Wendel M, Racey SN, Birch MA. The hyalectan degrading ADAMTS-1 enzyme is expressed by osteoblasts and up-regulated at regions of new bone formation. Bone. 2005;36:408–17.
Kuno K, Matsushima K. ADAMTS-1 Protein Anchors at the Extracellular Matrix through the Thrombospondin Type I Motifs and Its Spacing Region. J Biol Chem. 1998;273:13912–7.
Honke K, Taniguchi N. Sulfotransferases and sulfated oligosaccharides. Med Res Rev. 2002;22:637–54.
Ozawa M, Muramatsu T. Reticulocalbin, a novel endoplasmic reticulum resident Ca2+-binding protein with multiple EF-hand motifs and a carboxyl-terminal HDEL sequence. J Biol Chem. 1993;268:699–705.
Lin X, Sikkink RA, Rusnak F, Barber DL. Inhibition of calcineurin phosphatase activity by a calcineurin B homologous protein. J Biol Chem. 1999;274:36125–31.
Gubser C, Bergamaschi D, Hollinshead M, Lu X, van Kuppeveld FJ, Smith GL. A new inhibitor of apoptosis from vaccinia virus and eukaryotes. PLoS Pathog. 2007;3, e17.
Lynn DJ, Higgs R, Lloyd AT, O’Farrelly C, Herve-Grepinet V, Nys Y, et al. Avian beta-defensin nomenclature: a community proposed update. Immunol Lett. 2007;110:86–9.
Cuperus T, Coorens M, van Dijk A, Haagsman HP. Avian host defense peptides. Dev Comp Immulogy. 2013;41:352–69.
Burley RW, Vadehra DV. The avian egg: chemistry and biology: Wiley-Interscience Publication: New York 1989.
Delmar P, Robin S, Daudin JJ. VarMixt: efficient variance modelling for the differential analysis of replicated gene expression data. Bioinformatics. 2005;21:502–8.
Benjamini Y, Hochberg Y. Controlling the False Discovery Rate – a Practical and Powerful Approach to Multiple Testing. J R Stat Soc Series B Stat Methodol. 1995;57:289–300.
Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources. Nature Protoc. 2009;4:44–57.
SignalP 4.1 [http://www.cbs.dtu.dk/services/SignalP/].
Nordahl Petersen T, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nature Meth. 2011;8:785–6.
SecretomeP 2.0 [http://www.cbs.dtu.dk/services/SecretomeP/].
Dyrløv Bendtsen J, Juhl Jensen L, Blom N, von Heijne G, Brunak S. Feature based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel. 2004;17:349–56.