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6356 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. BBX proteins play important roles in all of the major light-regulated developmental processes. However, no systematic analysis of BBX gene family regarding the regulation of photoperiodic microtuber formation has...

    Authors: Yingying Chang, Haoyuan Sun, Shiyu Liu, Yulong He, Shanshan Zhao, Jiage Wang, Tianle Wang, Jiangli Zhang, Jin Gao, Qingxiang Yang, Mingjun Li and Xiting Zhao
    Citation: BMC Genomics 2023 24:354
    Content type: Research Published on:

  2. The massive scale of microarray derived gene expression data allows for a global view of cellular function. Thus far, comparative studies of gene expression between species have been based on the level of expr...

    Authors: Bas E Dutilh, Martijn A Huynen and Berend Snel
    Citation: BMC Genomics 2006 7:10
    Content type: Research article Published on:

  3. In plants, Calcium (Ca2+) acts as a universal messenger in various signal transduction pathways, including responses to biotic and abiotic stresses and regulation of cellular and developmental processes. The Ca2+

    Authors: Weihua Su, Chang Zhang, Dongjiao Wang, Yongjuan Ren, Tingting Sun, Jingfang Feng, Yachun Su, Liping Xu, Mutian Shi and Youxiong Que
    Citation: BMC Genomics 2021 22:549
    Content type: Research Published on:

  4. With the advances in high-throughput gene profiling technologies, a large volume of gene interaction maps has been constructed. A higher-level layer of gene-gene interaction, namely modulate gene interaction, ...

    Authors: Yu-Chiao Chiu, Li-Ju Wang, Tzu-Hung Hsiao, Eric Y. Chuang and Yidong Chen
    Citation: BMC Genomics 2017 18(Suppl 6):679
    Content type: Research Published on:

    This article is part of a Supplement: Volume 18 Supplement 6

  5. Multidrug- (MDR) and extensively drug resistant (XDR) tuberculosis (TB) presents a challenge to disease control and elimination goals. In Lisbon, Portugal, specific and successful XDR-TB strains have been foun...

    Authors: João Perdigão, Hugo Silva, Diana Machado, Rita Macedo, Fernando Maltez, Carla Silva, Luisa Jordao, Isabel Couto, Kim Mallard, Francesc Coll, Grant A Hill-Cawthorne, Ruth McNerney, Arnab Pain, Taane G Clark, Miguel Viveiros and Isabel Portugal
    Citation: BMC Genomics 2014 15:991
    Content type: Research article Published on:

  6. Staphylococcus aureus is a human pathogen responsible for substantial morbidity and mortality through its ability to cause a number of human infections including bacteremia, pneumonia and soft tissue infections. ...

    Authors: Marcus B Jones, Christopher P Montgomery, Susan Boyle-Vavra, Kenneth Shatzkes, Rosslyn Maybank, Bryan C Frank, Scott N Peterson and Robert S Daum
    Citation: BMC Genomics 2014 15:1145
    Content type: Research article Published on:

  7. Despite rhabdoviral infections being one of the best known fish diseases, the gene expression changes induced at the surface tissues after the natural route of infection (infection-by-immersion) have not been ...

    Authors: Paloma Encinas, Miguel A Rodriguez-Milla, Beatriz Novoa, Amparo Estepa, Antonio Figueras and Julio Coll
    Citation: BMC Genomics 2010 11:518
    Content type: Research article Published on:

  8. Horseshoe crabs are ancient marine arthropods with a long evolutionary history extending back approximately 450 million years, which may benefit from their innate immune systems. However, the genetic mechanism...

    Authors: Yan Zhou, Yuan Liang, Qing Yan, Liang Zhang, Dianbao Chen, Lingwei Ruan, Yuan Kong, Hong Shi, Mingliang Chen and Jianming Chen
    Citation: BMC Genomics 2020 21:137
    Content type: Research article Published on:

  9. Successful mating of female mosquitoes typically occurs once, with the male sperm being stored in the female spermatheca for every subsequent oviposition event. The female spermatheca is responsible for the ma...

    Authors: Tales Vicari Pascini, Marcelo Ramalho-Ortigão, José Marcos Ribeiro, Marcelo Jacobs-Lorena and Gustavo Ferreira Martins
    Citation: BMC Genomics 2020 21:143
    Content type: Research article Published on:

  10. Myostatin (MSTN) is a member of the transforming growth factor-β superfamily that negatively regulates growth of skeletal muscle tissue. The gene encoding for the MSTN peptide is a consolidate candidate for th...

    Authors: Christian De Santis, Brad S Evans, Carolyn Smith-Keune and Dean R Jerry
    Citation: BMC Genomics 2008 9:82
    Content type: Research article Published on:

  11. Triatoma infestans is the main vector of Chagas disease in the Americas, currently transmitting it in Argentina, Paraguay, and Bolivia. Many T. infestans populations present insecticide resistance, reducing the e...

    Authors: Jose Manuel Latorre Estivalis, Lucila Traverso, Gina Pontes and Marcelo Gustavo Lorenzo
    Citation: BMC Genomics 2022 23:861
    Content type: Research Published on:

  12. Weeping lovegrass (Eragrostis curvula [Shrad.] Nees) is a perennial grass found in semi-arid regions that is well adapted for growth in sandy soils and drought conditions. E. curvula constitutes a polymorphic com...

    Authors: Ingrid Garbus, Juan Pablo Selva, María Cielo Pasten, Andrés Martín Bellido, José Carballo, Emidio Albertini and Viviana Echenique
    Citation: BMC Genomics 2019 20:839
    Content type: Research article Published on:

  13. Transcriptional responses to small molecules can provide insights into drug mode of action (MOA). The capacity of the human malaria parasite, Plasmodium falciparum, to respond specifically to transcriptional pert...

    Authors: Geoffrey H. Siwo, Roger S. Smith, Asako Tan, Katrina A. Button-Simons, Lisa A. Checkley and Michael T. Ferdig
    Citation: BMC Genomics 2015 16:1030
    Content type: Research article Published on:

  14. The northern elephant seal, Mirounga angustirostris, is a valuable animal model of fasting adaptation and hypoxic stress tolerance. However, no reference sequence is currently available for this and many other ma...

    Authors: Jane I Khudyakov, Likit Preeyanon, Cory D Champagne, Rudy M Ortiz and Daniel E Crocker
    Citation: BMC Genomics 2015 16:64
    Content type: Research article Published on:

  15. Cancers exhibit complex transcriptomes with aberrant splicing that induces isoform-level differential expression compared to non-diseased tissues. Transcriptomic profiling using short-read sequencing has utili...

    Authors: Saranga Wijeratne, Maria E. Hernandez Gonzalez, Kelli Roach, Katherine E. Miller, Kathleen M. Schieffer, James R. Fitch, Jeffrey Leonard, Peter White, Benjamin J. Kelly, Catherine E. Cottrell, Elaine R. Mardis, Richard K. Wilson and Anthony R. Miller
    Citation: BMC Genomics 2024 25:122
    Content type: Research Published on:

  16. Scatophagus argus is a popular farmed fish in several countries of Southeast Asia, including China. Although S. argus has a highly promising economic value, a significant lag of breeding research severely obstruc...

    Authors: Wei Yang, Yaorong Wang, Dongneng Jiang, Changxu Tian, Chunhua Zhu, Guangli Li and Huapu Chen
    Citation: BMC Genomics 2020 21:278
    Content type: Research article Published on:

  17. Copy number variation (CNV) is a major source of genome polymorphism that directly contributes to phenotypic variation such as resistance to infectious diseases. Lines 63 and 72 are two highly inbred experimental...

    Authors: Yiyuan Yan, Ning Yang, Hans H. Cheng, Jiuzhou Song and Lujiang Qu
    Citation: BMC Genomics 2015 16:843
    Content type: Research article Published on:

  18. A major role of REST (repressor element-1 silencing transcription factor) is to inhibit the expression of neuronal genes in neural stem cells and non-neuronal cells by binding to a 21 bp consensus sequence and...

    Authors: Banu Saritas-Yildirim, Christopher P Childers, Christine G Elsik and Elena M Silva
    Citation: BMC Genomics 2015 16:380
    Content type: Research article Published on:

  19. Protein interactions are essential for most cellular functions. Interactions mediated by domains that appear in a large number of proteins are of particular interest since they are expected to have an impact o...

    Authors: Siyuan Ren, Vladimir N Uversky, Zhengjun Chen, A Keith Dunker and Zoran Obradovic
    Citation: BMC Genomics 2008 9(Suppl 2):S26
    Content type: Research Published on:

    This article is part of a Supplement: Volume 9 Supplement 2

  20. Zymomonas mobilis ZM4 (ZM4) produces near theoretical yields of ethanol with high specific productivity and recombinant strains are able to ferment both C-5 and C-6 sugars. Z. mobilis performs best under anaerobi...

    Authors: Shihui Yang, Timothy J Tschaplinski, Nancy L Engle, Sue L Carroll, Stanton L Martin, Brian H Davison, Anthony V Palumbo, Miguel Rodriguez Jr and Steven D Brown
    Citation: BMC Genomics 2009 10:34
    Content type: Research article Published on:

  21. Insects subsisting on nutritionally unbalanced diets have evolved long-term mutualistic relationships with intracellular symbiotic bacteria (endosymbionts). The endosymbiont population load undergoes changes a...

    Authors: Florent Masson, Yves Moné, Aurélien Vigneron, Agnès Vallier, Nicolas Parisot, Carole Vincent-Monégat, Séverine Balmand, Marie-Christine Carpentier, Anna Zaidman-Rémy and Abdelaziz Heddi
    Citation: BMC Genomics 2015 16:819
    Content type: Research article Published on:

  22. Caligid copepods, also called sea lice, are fish ectoparasites, some species of which cause significant problems in the mariculture of salmon, where the annual cost of infection is in excess of €300 million gl...

    Authors: Stephen N Carmichael, James E Bron, John B Taggart, Jacqueline H Ireland, Michaël Bekaert, Stewart TG Burgess, Philip J Skuce, Alasdair J Nisbet, Karim Gharbi and Armin Sturm
    Citation: BMC Genomics 2013 14:408
    Content type: Research article Published on:

  23. A number of spider species within the family Theridiidae exhibit a dramatic abdominal (opisthosomal) color polymorphism. The polymorphism is inherited in a broadly Mendelian fashion and in some species consist...

    Authors: Peter JP Croucher, Michael S Brewer, Christopher J Winchell, Geoff S Oxford and Rosemary G Gillespie
    Citation: BMC Genomics 2013 14:862
    Content type: Research article Published on:

  25. Copy number variations (CNVs) have been shown to account for substantial portions of observed genomic variation and have been associated with qualitative and quantitative traits and the onset of disease in a n...

    Authors: Joaquim Manoel da Silva, Poliana Fernanda Giachetto, Luiz Otávio da Silva, Leandro Carrijo Cintra, Samuel Rezende Paiva, Michel Eduardo Beleza Yamagishi and Alexandre Rodrigues Caetano
    Citation: BMC Genomics 2016 17:454
    Content type: Research article Published on:

  26. Morphological and traditional genetic studies of the young Pliocene genus Hyles have led to the understanding that despite its importance for taxonomy, phenotypic similarity of wing patterns does not correlate wi...

    Authors: Anna K. Hundsdoerfer, Tilman Schell, Franziska Patzold, Charlotte J. Wright, Atsuo Yoshido, František Marec, Hana Daneck, Sylke Winkler, Carola Greve, Lars Podsiadlowski, Michael Hiller and Martin Pippel
    Citation: BMC Genomics 2023 24:443
    Content type: Research Published on:

  27. Venom variation occurs at all taxonomical levels and can impact significantly upon the clinical manifestations and efficacy of antivenom therapy following snakebite. Variation in snake venom composition is tho...

    Authors: Nicholas R Casewell, Robert A Harrison, Wolfgang Wüster and Simon C Wagstaff
    Citation: BMC Genomics 2009 10:564
    Content type: Research article Published on:

  28. While leeches in the genus Hirudo have long been models for neurobiology, the molecular underpinnings of nervous system structure and function in this group remain largely unknown. To begin to bridge this gap, we...

    Authors: Elizabeth Heath-Heckman, Shinja Yoo, Christopher Winchell, Maurizio Pellegrino, James Angstadt, Veronica B. Lammardo, Diana Bautista, Francisco F. De-Miguel and David Weisblat
    Citation: BMC Genomics 2021 22:215
    Content type: Research article Published on:

  29. Hepatocellular carcinoma (HCC) is on the rise and the sixth most common cancer worldwide. To combat HCC effectively research is directed towards its early detection and the development of targeted therapies. G...

    Authors: Jürgen Borlak, Prashant Singh and Giuseppe Gazzana
    Citation: BMC Genomics 2015 16:124
    Content type: Research article Published on:

  30. Theobroma cacao L., is a tree originated from the tropical rainforest of South America. It is one of the major cash crops for many tropical countries. T. cacao is mainly produced on smallholdings, providing resou...

    Authors: Xavier Argout, Olivier Fouet, Patrick Wincker, Karina Gramacho, Thierry Legavre, Xavier Sabau, Ange Marie Risterucci, Corinne Da Silva, Julio Cascardo, Mathilde Allegre, David Kuhn, Joseph Verica, Brigitte Courtois, Gaston Loor, Regis Babin, Olivier Sounigo…
    Citation: BMC Genomics 2008 9:512
    Content type: Research article Published on:

  31. Listeria monocytogenes is an important food-borne pathogen and model organism for host-pathogen interaction, thus representing an invaluable target considering research on the forces governing the evolution of su...

    Authors: Carsten Kuenne, André Billion, Mobarak Abu Mraheil, Axel Strittmatter, Rolf Daniel, Alexander Goesmann, Sukhadeo Barbuddhe, Torsten Hain and Trinad Chakraborty
    Citation: BMC Genomics 2013 14:47
    Content type: Research article Published on:

  32. MicroRNAs (miRNAs) exist pervasively across viruses, plants and animals and play important roles in the post-transcriptional regulation of genes. In the common carp, miRNA targets have not been investigated. I...

    Authors: Ya-Ping Zhu, Wei Xue, Jin-Tu Wang, Yu-Mei Wan, Shao-Lin Wang, Peng Xu, Yan Zhang, Jiong-Tang Li and Xiao-Wen Sun
    Citation: BMC Genomics 2012 13:413
    Content type: Research article Published on:

  33. Ligilactobacillus salivarius has been frequently isolated from the gut microbiota of humans and domesticated animals and has been studied as a candidate probiotic. Badger (Meles meles) is known as a “generalist” ...

    Authors: Yu Wang, Xiaomeng Xu, Huan Chen, Fang Yang, Bo Xu, Kun Wang, Qianwen Liu, Guixin Liang, Ruiqi Zhang, Xin’an Jiao and Yunzeng Zhang
    Citation: BMC Genomics 2023 24:530
    Content type: Research Published on:

  35. The parasite Echinococcus canadensis (G7) (phylum Platyhelminthes, class Cestoda) is one of the causative agents of echinococcosis. Echinococcosis is a worldwide chronic zoonosis affecting humans as well as domes...

    Authors: Lucas L. Maldonado, Juliana Assis, Flávio M. Gomes Araújo, Anna C. M. Salim, Natalia Macchiaroli, Marcela Cucher, Federico Camicia, Adolfo Fox, Mara Rosenzvit, Guilherme Oliveira and Laura Kamenetzky
    Citation: BMC Genomics 2017 18:204
    Content type: Research article Published on:

  36. Horizontal gene transfer (HGT) has been widely identified in complete prokaryotic genomes. However, the roles of HGT among members of a microbial community and in evolution remain largely unknown. With the eme...

    Authors: Jiangtao Guo, Qi Wang, Xiaoqi Wang, Fumeng Wang, Jinxian Yao and Huaiqiu Zhu
    Citation: BMC Genomics 2015 16:496
    Content type: Research article Published on:

  37. Global biodiversity is decreasing at an alarming rate and amphibians are at the forefront of this crisis. Understanding the factors that negatively impact amphibian populations and effectively monitoring their...

    Authors: Timothy A. Clay, Michael A. Steffen, Michael L. Treglia, Carolyn D. Torres, Ana Lilia Trujano-Alvarez and Ronald M. Bonett
    Citation: BMC Genomics 2019 20:482
    Content type: Research article Published on:

  39. Identifying genes of adaptive significance in a changing environment is a major focus of ecological genomics. Such efforts were restricted, until recently, to researchers studying a small group of model organi...

    Authors: Steve Smith, Louis Bernatchez and Luciano B Beheregaray
    Citation: BMC Genomics 2013 14:375
    Content type: Research article Published on:

  40. Stayability, which may be defined as the probability of a cow remaining in the herd until a reference age or at a specific number of calvings, is usually measured late in the animal’s life. Thus, if used as se...

    Authors: Diogo Osmar Silva, Gerardo Alves Fernandes Júnior, Larissa Fernanda Simielli Fonseca, Lúcio Flávio Macedo Mota, Tiago Bresolin, Roberto Carvalheiro and Lucia Galvão de Albuquerque
    Citation: BMC Genomics 2024 25:93
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:211

  41. The majority of introns in gene transcripts are found within the coding sequences (CDSs). A small but significant fraction of introns are also found to reside within the untranslated regions (5'UTRs and 3'UTRs...

    Authors: Betty YW Chung, Cas Simons, Andrew E Firth, Chris M Brown and Roger P Hellens
    Citation: BMC Genomics 2006 7:120
    Content type: Research article Published on:

  42. Large scale transcript analysis of human glomerular microvascular endothelial cells (HGMEC) has never been accomplished. We designed this study to define the transcriptome of HGMEC and facilitate a better char...

    Authors: Guerkan Sengoelge, Wolfgang Winnicki, Anne Kupczok, Arndt von Haeseler, Michael Schuster, Walter Pfaller, Paul Jennings, Ansgar Weltermann, Sophia Blake and Gere Sunder-Plassmann
    Citation: BMC Genomics 2014 15:725
    Content type: Research article Published on:

  43. cAMP signaling produces dramatic changes in astrocyte morphology and physiology. However, its involvement in phenotype acquisition and the transcriptionally mediated mechanisms of action are largely unknown.

    Authors: Sonia Paco, Manuela Hummel, Virginia Plá, Lauro Sumoy and Fernando Aguado
    Citation: BMC Genomics 2016 17:304
    Content type: Research article Published on:

  44. Witches’ broom disease (WBD) caused by the fungus Moniliophthora perniciosa is responsible for considerable economic losses for cacao producers. One of the ways to combat WBD is to plant resistant cultivars. Resi...

    Authors: Stefan Royaert, Johannes Jansen, Daniela Viana da Silva, Samuel Martins de Jesus Branco, Donald S. Livingstone III, Guiliana Mustiga, Jean-Philippe Marelli, Ioná Santos Araújo, Ronan Xavier Corrêa and Juan Carlos Motamayor
    Citation: BMC Genomics 2016 17:107
    Content type: Research article Published on:

  45. Trypanosoma cruzi marinkellei is a bat-associated parasite of the subgenus Schizotrypanum and it is regarded as a T. cruzi subspecies. Here we report a draft genome sequence of T. c. marinkellei and comparison wi...

    Authors: Oscar Franzén, Carlos Talavera-López, Stephen Ochaya, Claire E Butler, Louisa A Messenger, Michael D Lewis, Martin S Llewellyn, Cornelis J Marinkelle, Kevin M Tyler, Michael A Miles and Björn Andersson
    Citation: BMC Genomics 2012 13:531
    Content type: Research article Published on:

  46. Oocytes and early embryos contain minute amounts of DNA, RNA and proteins, making the study of early mammalian development highly challenging. The study of the embryo epigenome, in particular the DNA methylome...

    Authors: Habib A Shojaei Saadi, Alan M O’Doherty, Dominic Gagné, Éric Fournier, Jason R Grant, Marc-André Sirard and Claude Robert
    Citation: BMC Genomics 2014 15:451
    Content type: Methodology article Published on:

  47. The pufferfish Fugu rubripes (Fugu) with its compact genome is increasingly recognized as an important vertebrate model for comparative genomic studies. In particular, large regions of conserved synteny between h...

    Authors: Alexandre Montpetit, Michael D Wilson, Mario Chevrette, Ben F Koop and Daniel Sinnett
    Citation: BMC Genomics 2003 4:30
    Content type: Research article Published on:

  48. Long noncoding RNA (lncRNA) is highly associated with inflammatory response and virus-induced interferon production. By far the majority of studies have focused on the immune-related lncRNAs of mice and humans...

    Authors: Junxin Gao, Yu Pan, Yunfei Xu, Wenli Zhang, Lin Zhang, Xi Li, Zhijun Tian, Hongyan Chen and Yue Wang
    Citation: BMC Genomics 2021 22:177
    Content type: Research article Published on:

  49. The interaction networks between coding and non-coding RNAs (ncRNAs) including long non-coding RNA (lncRNA), covalently closed circular RNA (circRNA) and miRNA are significant to elucidate molecular processes ...

    Authors: Zigang Shen, Qiong Yang, Lie Luo, Tangxin Li, Zhuojun Ke, Tian Li, Jie Chen, Xianzhi Meng, Heng Xiang, Chunfeng Li, Zeyang Zhou, Ping Chen and Guoqing Pan
    Citation: BMC Genomics 2023 24:420
    Content type: Research Published on:

  50. Heat Shock Proteins 70 (HSP70s) in insects act on a diverse range of substrates to assist with overcoming extreme high temperatures. MaltHSP70-2, a member of HSP70s, has been characterized to involve in the th...

    Authors: Hui Li, Shouyin Li, Jin Chen, Lulu Dai, Ruixu Chen, Jianren Ye and Dejun Hao
    Citation: BMC Genomics 2022 23:646
    Content type: Research Published on:

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BMC Genomics

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