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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. The genotype-by-environment interaction (GxE) in beef cattle can be investigated using reaction norm models to assess environmental sensitivity and, combined with genome-wide association studies (GWAS), to map...

    Authors: Ivan Carvalho Filho, Leonardo M. Arikawa, Lucio F. M. Mota, Gabriel S. Campos, Larissa F. S. Fonseca, Gerardo A. Fernandes Júnior, Flavio S. Schenkel, Daniela Lourenco, Delvan A. Silva, Caio S. Teixeira, Thales L. Silva, Lucia G. Albuquerque and Roberto Carvalheiro
    Citation: BMC Genomics 2024 25:623
    Content type: Research Published on:

  2. Because of their phylogenetic position and unique characteristics of their biology and life cycle, ferns represent an important lineage for studying the evolution of land plants. Large and complex genomes in f...

    Authors: Joshua P Der, Michael S Barker, Norman J Wickett, Claude W dePamphilis and Paul G Wolf
    Citation: BMC Genomics 2011 12:99
    Content type: Research article Published on:

  3. Plant cell walls are complex structures that full-fill many diverse functions during plant growth and development. It is therefore not surprising that thousands of gene products are involved in cell wall synth...

    Authors: Kai Guo, Weihua Zou, Yongqing Feng, Mingliang Zhang, Jing Zhang, Fen Tu, Guosheng Xie, Lingqiang Wang, Yangting Wang, Sebastian Klie, Staffan Persson and Liangcai Peng
    Citation: BMC Genomics 2014 15:596
    Content type: Research article Published on:

  4. ASAP is a newly characterized microtubule-associated protein (MAP) essential for proper cell-cycling. We have previously shown that expression deregulation of human ASAP results in profound defects in mitotic ...

    Authors: Magali Venoux, Karine Delmouly, Ollivier Milhavet, Sophie Vidal-Eychenié, Dominique Giorgi and Sylvie Rouquier
    Citation: BMC Genomics 2008 9:406
    Content type: Research article Published on:

  5. Saliva of adult female mosquitoes help sugar and blood feeding by providing enzymes and polypeptides that help sugar digestion, control microbial growth and counteract their vertebrate host hemostasis and infl...

    Authors: Eric Calvo, Irma Sanchez-Vargas, Amanda J Favreau, Kent D Barbian, Van M Pham, Kenneth E Olson and José MC Ribeiro
    Citation: BMC Genomics 2010 11:51
    Content type: Research article Published on:

  6. Flax (Linum usitatissimum L.) is an important source of oil rich in omega-3 fatty acids, which have proven health benefits and utility as an industrial raw material. Flax seeds also contain lignans which are asso...

    Authors: Raja Ragupathy, Rajkumar Rathinavelu and Sylvie Cloutier
    Citation: BMC Genomics 2011 12:217
    Content type: Research article Published on:

  7. Global per capita meat consumption continues to rise, especially pork. Meat quality is influenced by the content of intramuscular fat (IMF) as a key factor. The longissimus dorsi muscle of Dahe pigs (DHM, IMF: 7....

    Authors: Lanlan Yi, Qiuyan Li, Junhong Zhu, Wenjie Cheng, Yuxiao Xie, Ying Huang, Hongye Zhao, Meilin Hao, Hongjiang Wei and Sumei Zhao
    Citation: BMC Genomics 2024 25:622
    Content type: Research Published on:

  8. Anti-CD3 immunotherapy was initially approved for clinical use for renal transplantation rejection prevention. Subsequently, new generations of anti-CD3 antibodies have entered clinical trials for a broader sp...

    Authors: Isabel Garcia Sousa, Kelly Cristina Rodrigues Simi, Manuela Maragno do Almo, Maryani Andressa Gomes Bezerra, Gero Doose, Tainá Raiol, Peter F. Stadler, Steve Hoffmann, Andréa Queiroz Maranhão and Marcelo Macedo Brigido
    Citation: BMC Genomics 2019 20:593
    Content type: Research article Published on:

  11. Understanding polyphenism, the ability of a single genome to express multiple morphologically and behaviourally distinct phenotypes, is an important goal for evolutionary and developmental biology. Polyphenism...

    Authors: Thomas J Colgan, James C Carolan, Stephen J Bridgett, Seirian Sumner, Mark L Blaxter and Mark JF Brown
    Citation: BMC Genomics 2011 12:623
    Content type: Research article Published on:

  12. cDNA libraries are widely used to identify genes and splice variants, and as a physical resource for full-length clones. Conventionally-generated cDNA libraries contain a high percentage of 5'-truncated clones...

    Authors: Ruth Wellenreuther, Ingo Schupp, Annemarie Poustka and Stefan Wiemann
    Citation: BMC Genomics 2004 5:36
    Content type: Methodology article Published on:

  13. In rubber tree, bark is one of important agricultural and biological organs. However, the molecular mechanism involved in the bark formation and development in rubber tree remains largely unknown, which is at ...

    Authors: Dejun Li, Zhi Deng, Bi Qin, Xianghong Liu and Zhonghua Men
    Citation: BMC Genomics 2012 13:192
    Content type: Research article Published on:

  14. Calcareous outcrops, rocky areas composed of calcium carbonate (CaCO3), often host a diverse, specialized, and threatened biomineralizing fauna. Despite the repeated evolution of physiological and morphological a...

    Authors: T. Mason Linscott, Andrea González-González, Takahiro Hirano and Christine E. Parent
    Citation: BMC Genomics 2022 23:796
    Content type: Research Published on:

  15. Ecosystems worldwide are suffering the consequences of anthropogenic impact. The diverse ecosystem of coral reefs, for example, are globally threatened by increases in sea surface temperatures due to global wa...

    Authors: Camila Granados-Cifuentes, Anthony J Bellantuono, Tyrone Ridgway, Ove Hoegh-Guldberg and Mauricio Rodriguez-Lanetty
    Citation: BMC Genomics 2013 14:228
    Content type: Research article Published on:

  16. Human leukocyte antigen (HLA)-B27 is strongly associated with the development of reactive arthritis (ReA) in humans after salmonellosis. Human monocytic U937 cells transfected with HLA-B27 are less able to eli...

    Authors: Shichao Ge, Vittoria Danino, Qiushui He, Jay CD Hinton and Kaisa Granfors
    Citation: BMC Genomics 2010 11:456
    Content type: Research article Published on:

  18. Macrosatellites are some of the largest variable number tandem repeats in the human genome, but what role these unusual sequences perform is unknown. Their importance to human health is clearly demonstrated by...

    Authors: Deanna C Tremblay, Graham Alexander Jr, Shawn Moseley and Brian P Chadwick
    Citation: BMC Genomics 2010 11:632
    Content type: Research article Published on:

  19. Stathmin (STMN1) protein functions to regulate assembly of the microtubule cytoskeleton by destabilizing microtubule polymers. Stathmin over-expression has been correlated with cancer stage progression, while ...

    Authors: Danielle N Ringhoff and Lynne Cassimeris
    Citation: BMC Genomics 2009 10:343
    Content type: Research article Published on:

  20. Bladder cancer is the most common malignant tumor of the urinary system and it is a heterogeneous disease with both superficial and invasive growth. However, its aetiological agent is still unclear. And it is ...

    Authors: Su-Ping Deng, Lin Zhu and De-Shuang Huang
    Citation: BMC Genomics 2015 16(Suppl 3):S4
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 16 Supplement 3

  21. This study characterises the molecular processes altered by both elevated CO2 and increasing temperature in oysters. Differences in resilience of marine organisms against the environmental stressors associated wi...

    Authors: Priscila Goncalves, Emma L. Thompson and David A. Raftos
    Citation: BMC Genomics 2017 18:431
    Content type: Research article Published on:

  22. Data normalization is a key step in gene expression analysis by qPCR. Endogenous control genes are used to estimate variations and experimental errors occurring during sample preparation and expression measure...

    Authors: Mauricio González-Agüero, Miguel García-Rojas, Alex Di Genova, José Correa, Alejandro Maass, Ariel Orellana and Patricio Hinrichsen
    Citation: BMC Genomics 2013 14:878
    Content type: Methodology article Published on:

  23. Large difference in cerebrum size exist between avian species and populations of the same species and is believed to reflect differences in processing power, i.e. in the speed and efficiency of processing info...

    Authors: Andrey Höglund, Katharina Strempfl, Jesper Fogelholm, Dominic Wright and Rie Henriksen
    Citation: BMC Genomics 2020 21:518
    Content type: Research article Published on:

  24. While product of the myostatin gene (MSTN) is an important factor influencing muscle growth, which is well confirmed in nonhuman species, it has not been clearly confirmed whether MSTN expression influences inter...

    Authors: Agata Leońska-Duniec, Małgorzata Borczyk, Michał Korostyński, Myosotis Massidda, Ewelina Maculewicz and Paweł Cięszczyk
    Citation: BMC Genomics 2023 24:761
    Content type: Research Published on:

    The Correction to this article has been published in BMC Genomics 2024 25:27

  25. Sphingobium spp. are efficient degraders of a wide range of chlorinated and aromatic hydrocarbons. In particular, strains which harbour the lin pathway genes mediating the degradation of hexachlorocyclohexane (HC...

    Authors: Helianthous Verma, Roshan Kumar, Phoebe Oldach, Naseer Sangwan, Jitendra P Khurana, Jack A Gilbert and Rup Lal
    Citation: BMC Genomics 2014 15:1014
    Content type: Research article Published on:

  26. Intramuscular fat (IMF) is one of the most important factors positively associated with meat quality. Triglycerides (TGs), as the main component of IMF, play an essential role in muscle lipid metabolism. This ...

    Authors: Lu Liu, Xiaojing Liu, Huanxian Cui, Ranran Liu, Guiping Zhao and Jie Wen
    Citation: BMC Genomics 2019 20:863
    Content type: Research article Published on:

  27. All diseases containing genetic material undergo genetic evolution and give rise to heterogeneity including cancer and infection. Although these illnesses are biologically very different, the ability for phylo...

    Authors: Filippo Utro, Chaya Levovitz, Kahn Rhrissorrakrai and Laxmi Parida
    Citation: BMC Genomics 2021 22(Suppl 5):518
    Content type: Research Published on:

    This article is part of a Supplement: Volume 22 Supplement 5

    The Correction to this article has been published in BMC Genomics 2023 24:6

  28. Skeletal muscle satellite cells (MSC) are crucial for postnatal growth and regeneration of skeletal muscle. An interaction exists between MSC and intramuscular preadipocytes (IMPA). This study is the first to ...

    Authors: Liping Guo, Huanxian Cui, Guiping Zhao, Ranran Liu, Qinghe Li, Maiqing Zheng, Yuming Guo and Jie Wen
    Citation: BMC Genomics 2018 19:838
    Content type: Research article Published on:

  29. Rahnella perminowiae S11P1 and Variovorax sp. S12S4 are two plant growth-promoting rhizobacteria that were previously isolated from the rhizosphere of Crocus sativus L. (saffron), and have demonstrated interestin...

    Authors: Rahma ZOUAGUI, Houda ZOUAGUI, Jamal AURAG, Azeddine IBRAHIMI and Laila SBABOU
    Citation: BMC Genomics 2024 25:289
    Content type: Research Published on:

  30. Morchella spongiola is a highly prized mushroom for its delicious flavor and medical value and is one of the most flourishing, representative, and dominant macrofungi in the Qilian Mountains of the Qinghai-Tibet ...

    Authors: Qing Meng, Zhanling Xie, Hongyan Xu, Jing Guo, Qingqing Peng, Yanyan Li, Jiabao Yang, Deyu Dong, Taizhen Gao and Fan Zhang
    Citation: BMC Genomics 2024 25:518
    Content type: Research Published on:

  31. The glycosylation process, catalyzed by ubiquitous glycosyltransferase (GT) family enzymes, is a prevalent modification of plant secondary metabolites that regulates various functions such as hormone homeostas...

    Authors: Vitthal T Barvkar, Varsha C Pardeshi, Sandip M Kale, Narendra Y Kadoo and Vidya S Gupta
    Citation: BMC Genomics 2012 13:175
    Content type: Research article Published on:

  33. Although the toxicological impacts of the xenoestrogen bisphenol-A (BPA) have been studied extensively, but the mechanism of action is poorly understood. Eventually, no standard method exists for evaluating th...

    Authors: Md Saidur Rahman, Woo-Sung Kwon, Sung-Jae Yoon, Yoo-Jin Park, Buom-Yong Ryu and Myung-Geol Pang
    Citation: BMC Genomics 2016 17:577
    Content type: Research article Published on:

  34. Signalling pathways underlie development, behaviour and pathology. To understand patterns in the evolution of signalling pathways, we undertook a comprehensive investigation of the pathways that control the sw...

    Authors: Aude Gilabert, David M. Curran, Simon C. Harvey and James D. Wasmuth
    Citation: BMC Genomics 2016 17:476
    Content type: Research article Published on:

  35. The Cation Diffusion Facilitator (CDF) family is a ubiquitous family of heavy metal transporters. Much interest in this family has focused on implications for human health and bioremediation. In this work a br...

    Authors: Barbara Montanini, Damien Blaudez, Sylvain Jeandroz, Dale Sanders and Michel Chalot
    Citation: BMC Genomics 2007 8:107
    Content type: Research article Published on:

  37. Babesia ovata, belonging to the phylum Apicomplexa, is an infectious parasite of bovids. It is not associated with the manifestation of severe symptoms, in contrast to other types of b...

    Authors: Junya Yamagishi, Masahito Asada, Hassan Hakimi, Takeshi Q. Tanaka, Chihiro Sugimoto and Shin-ichiro Kawazu
    Citation: BMC Genomics 2017 18:832
    Content type: Research article Published on:

  38. Exceptionally, a single nucleotide sequence can be translated in vivo in two different frames to yield distinct proteins. In the case of the G-protein alpha subunit XL-alpha-s transcript, a frameshifted open read...

    Authors: Sebastien Ribrioux, Adrian Brüngger, Birgit Baumgarten, Klaus Seuwen and Markus R John
    Citation: BMC Genomics 2008 9:122
    Content type: Research article Published on:

  39. Mammalian spermatozoa must undergo capacitation, before becoming competent for fertilization. Despite its importance, the fundamental molecular mechanisms of capacitation are poorly understood. Therefore, in t...

    Authors: Woo-Sung Kwon, Md Saidur Rahman, June-Sub Lee, Jin Kim, Sung-Jae Yoon, Yoo-Jin Park, Young-Ah You, Seongsoo Hwang and Myung-Geol Pang
    Citation: BMC Genomics 2014 15:897
    Content type: Research article Published on:

  40. Cyanobacteria of the genus Nostoc are capable of forming symbioses with a wide range of organism, including a diverse assemblage of cyanolichens. Only certain lineages of Nostoc appear to be able to form a close,...

    Authors: Andrey N. Gagunashvili and Ólafur S. Andrésson
    Citation: BMC Genomics 2018 19:434
    Content type: Research article Published on:

  41. CRISPR/Cas9-based genome-editing systems have been used to efficiently engineer livestock species with precise genetic alterations intended for biomedical and agricultural applications. Previously, we have suc...

    Authors: Shiwei Zhou, Peter Kalds, Qi Luo, Kexin Sun, Xiaoe Zhao, Yawei Gao, Bei Cai, Shuhong Huang, Qifang Kou, Bjoern Petersen, Yulin Chen, Baohua Ma and Xiaolong Wang
    Citation: BMC Genomics 2022 23:348
    Content type: Research Published on:

  42. With the publication of the draft chicken genome and the recent production of several BAC clone libraries from non-avian reptiles and birds, it is now possible to undertake more detailed comparative genomic st...

    Authors: Charles Chapus and Scott V Edwards
    Citation: BMC Genomics 2009 10(Suppl 2):S8
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 10 Supplement 2

  43. A valuable tool for both research and industry, in vitro fertilization (IVF) has applications range from gamete selection and preservation of traits to cloning. Although IVF has achieved worldwide use, with ap...

    Authors: Ashley M Driver, Francisco Peñagaricano, Wen Huang, Khawaja R Ahmad, Katie S Hackbart, Milo C Wiltbank and Hasan Khatib
    Citation: BMC Genomics 2012 13:118
    Content type: Research article Published on:

  44. Plant growth is a complex process involving cell division and elongation. Arabidopsis thaliana hypocotyls undergo a 100-fold length increase mainly by cell elongation. Cell enlargement implicates significant chan...

    Authors: Elisabeth Jamet, David Roujol, Hélène San-Clemente, Muhammad Irshad, Ludivine Soubigou-Taconnat, Jean-Pierre Renou and Rafael Pont-Lezica
    Citation: BMC Genomics 2009 10:505
    Content type: Research article Published on:

  45. Cephalosporins and penicillins are the most frequently used β-lactam antibiotics for the treatment of human infections worldwide. The main industrial producers of these antibiotics are Acremonium chrysogenum and

    Authors: Dominik Terfehr, Tim A. Dahlmann and Ulrich Kück
    Citation: BMC Genomics 2017 18:272
    Content type: Research article Published on:

  46. Orange-spotted grouper (Epinephelus coioides) with protogynous hermaphroditic features are one of the most economically important aquaculture species in Taiwan. However, larvae stage grouper are susceptible to in...

    Authors: Yi-Da Wang, Shin-Jie Huang, Hong-Nong Chou, Wen-Liang Liao, Hong-Yi Gong and Jyh-Yih Chen
    Citation: BMC Genomics 2014 15:1102
    Content type: Research article Published on:

  47. Drought is one of the major environmental stresses resulting in a huge reduction in crop growth and biomass production. Pearl millet (Pennisetum glaucum L.) has excellent drought tolerance, and it could be used a...

    Authors: Ailing Zhang, Yang Ji, Min Sun, Chuang Lin, Puding Zhou, Juncai Ren, Dan Luo, Xiaoshan Wang, Congyu Ma, Xinquan Zhang, Guangyan Feng, Gang Nie and Linkai Huang
    Citation: BMC Genomics 2021 22:568
    Content type: Research Published on:

  48. Recently, pine wood nematode (PWN, Bursaphelenchus xylophilus) has been found in the extreme cold area of northeast China. The third-stage dispersal juvenile (DJ3) of PWN, which is a long-lived stress-resistant s...

    Authors: Qiaoli Chen, Ruizhi Zhang, Danlei Li, Feng Wang, Shengwei Jiang and Jianan Wang
    Citation: BMC Genomics 2021 22:524
    Content type: Research article Published on:

  49. The time required to analyse RNA-seq data varies considerably, due to discrete steps for computational assembly, quantification of gene expression and splicing analysis. Recent fast non-alignment tools such as...

    Authors: Paulo Rapazote-Flores, Micha Bayer, Linda Milne, Claus-Dieter Mayer, John Fuller, Wenbin Guo, Pete E. Hedley, Jenny Morris, Claire Halpin, Jason Kam, Sarah M. McKim, Monika Zwirek, M. Cristina Casao, Abdellah Barakate, Miriam Schreiber, Gordon Stephen…
    Citation: BMC Genomics 2019 20:968
    Content type: Research article Published on:

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