Skip to main content

Articles

6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 113 of 128

  1. In citrus, genetic improvement via biotechnology is hindered by the obstacle of in vitro regeneration via somatic embryogenesis (SE). Although a few B3 transcription factors are reported to regulate embryogene...

    Authors: Zheng Liu, Xiao-Xia Ge, Xiao-Meng Wu, Qiang Xu, Ross G. Atkinson and Wen-Wu Guo
    Citation: BMC Genomics 2020 21:305
    Content type: Research article Published on:

  2. Long non-coding RNAs (lncRNAs) have emerged as a class of factors that are important for regulating development and cancer. Computational prediction of lncRNAs from ultra-deep RNA sequencing has been successfu...

    Authors: Yixiao Gong, Hsuan-Ting Huang, Yu Liang, Thomas Trimarchi, Iannis Aifantis and Aristotelis Tsirigos
    Citation: BMC Genomics 2017 18:434
    Content type: Software Published on:

  3. The superfamily of ser ine p roteinase in hibitors (serpins) is involved in numerous fundamental biological processes as inflammation, blood coagulation and apoptosis. Our interest is focused on the SERPINA3 sub-...

    Authors: Patrick Pelissier, Didier Delourme, Agnes Germot, Xavier Blanchet, Samira Becila, Abderrahman Maftah, Hubert Leveziel, Ahmed Ouali and Laure Bremaud
    Citation: BMC Genomics 2008 9:151
    Content type: Research article Published on:

  4. Abiotic stresses like drought, heat, cold and salinity cause major productivity loss in the rapeseed-mustard crops (Brassica). Major efforts have been made in the past to identify genes that provide resistance ag...

    Authors: Deepika Verma, Neha Lakhanpal and Kashmir Singh
    Citation: BMC Genomics 2019 20:227
    Content type: Research article Published on:

  5. Myrciaria dubia is an Amazonian fruit shrub that produces numerous bioactive phytochemicals, but is best known by its high L-ascorbic acid (AsA) content in fruits. Pronounced variation...

    Authors: Juan C. Castro, J. Dylan Maddox, Marianela Cobos, David Requena, Mirko Zimic, Aureliano Bombarely, Sixto A. Imán, Luis A. Cerdeira and Andersson E. Medina
    Citation: BMC Genomics 2015 16:997
    Content type: Research article Published on:

  6. Cyclospora cayetanensis is an apicomplexan that causes diarrhea in humans. The investigation of foodborne outbreaks of cyclosporiasis has been hampered by a lack of genetic data and po...

    Authors: Shiyou Liu, Lin Wang, Huajun Zheng, Zhixiao Xu, Dawn M. Roellig, Na Li, Michael A. Frace, Kevin Tang, Michael J. Arrowood, Delynn M. Moss, Longxian Zhang, Yaoyu Feng and Lihua Xiao
    Citation: BMC Genomics 2016 17:316
    Content type: Research article Published on:

  7. The advancement of sequencing technologies today has made a plethora of whole-genome re-sequenced (WGRS) data publicly available. However, research utilizing the WGRS data without further configuration is near...

    Authors: Yen On Chan, Nicholas Dietz, Shuai Zeng, Juexin Wang, Sherry Flint-Garcia, M. Nancy Salazar-Vidal, Mária Škrabišová, Kristin Bilyeu and Trupti Joshi
    Citation: BMC Genomics 2023 24:107
    Content type: Software Published on:

  8. Cancer arises from the consecutive acquisition of genetic alterations. Increasing evidence suggests that as a consequence of these alterations, molecular interactions are reprogrammed in the context of highly ...

    Authors: Pilar Hernández, Jaime Huerta-Cepas, David Montaner, Fátima Al-Shahrour, Joan Valls, Laia Gómez, Gabriel Capellá, Joaquín Dopazo and Miguel Angel Pujana
    Citation: BMC Genomics 2007 8:185
    Content type: Research article Published on:

  9. Chrysosplenium L. (Saxifragaceae) is a genus of plants widely distributed in Northern Hemisphere and usually found in moist, shaded valleys and mountain slopes. This genus is ideal for studying plant adaptation t...

    Authors: Zhihua Wu, Rui Liao, Tiange Yang, Xiang Dong, Deqing Lan, Rui Qin and Hong Liu
    Citation: BMC Genomics 2020 21:621
    Content type: Research article Published on:

  10. Meloidogyne chitwoodi commonly known as Columbia root-knot nematode or CRKN is one of the most devastating pests of potato in the Pacific Northwest of the United States of America. In addition to the roots, it in...

    Authors: Sapinder Bali, Kelly Vining, Cynthia Gleason, Hassan Majtahedi, Charles R. Brown and Vidyasagar Sathuvalli
    Citation: BMC Genomics 2019 20:907
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2020 21:30

  11. Abnormal metabolic pathways have been considered as one of the hallmarks of cancer. While numerous metabolic pathways have been studied in various cancers, the direct link between metabolic pathway gene expres...

    Authors: Dan Zhang, Yan Guo and Ni Xie
    Citation: BMC Genomics 2020 21(Suppl 11):860
    Content type: Research Published on:

    This article is part of a Supplement: Volume 21 Supplement 11

  13. γδ T cells differ from αβ T cells with regard to the types of antigen with which their T cell receptors interact; γδ T cell antigens are not necessarily peptides nor are they presented on MHC. Cattle are consi...

    Authors: Carolyn TA Herzig, Marie-Paule Lefranc and Cynthia L Baldwin
    Citation: BMC Genomics 2010 11:100
    Content type: Research article Published on:

  14. Yellow or stripe rust, caused by the fungus Puccinia striiformis f. sp. tritici (Pst) is an important disease of wheat that threatens wheat production. Since developing resistant cultivars offers a viable solutio...

    Authors: Sandeep Kumar, Dinesh Kumar Saini, Farkhandah Jan, Sofora Jan, Mohd Tahir, Ivica Djalovic, Dragana Latkovic, Mohd Anwar Khan, Sundeep Kumar, V. K. Vikas, Upendra Kumar, Sundip Kumar, Narendra Singh Dhaka, Om Parkash Dhankher, Sachin Rustgi and Reyazul Rouf Mir
    Citation: BMC Genomics 2023 24:259
    Content type: Research Published on:

  15. Schistosomiasis remains an important parasitic disease and a major economic problem in many countries. The Schistosoma mansoni genome and predicted proteome sequences were recently published providing the opportu...

    Authors: Luiza F Andrade, Laila A Nahum, Lívia GA Avelar, Larissa L Silva, Adhemar Zerlotini, Jerônimo C Ruiz and Guilherme Oliveira
    Citation: BMC Genomics 2011 12:215
    Content type: Research article Published on:

  16. Sugarcane bagasse has been proposed as a lignocellulosic residue for second-generation ethanol (2G) produced by breaking down biomass into fermentable sugars. The enzymatic cocktails for biomass degradation ar...

    Authors: Paula Fagundes de Gouvêa, Aline Vianna Bernardi, Luis Eduardo Gerolamo, Emerson de Souza Santos, Diego Mauricio Riaño-Pachón, Sergio Akira Uyemura and Taisa Magnani Dinamarco
    Citation: BMC Genomics 2018 19:232
    Content type: Research article Published on:

  17. About 5% of western populations are afflicted by autoimmune diseases many of which are affected by sex hormones. Autoimmune diseases are complex and involve many genes. Identifying these disease-associated gen...

    Authors: Mandeep Kaur, Sebastian Schmeier, Cameron R MacPherson, Oliver Hofmann, Winston A Hide, Stephen Taylor, Nick Willcox and Vladimir B Bajic
    Citation: BMC Genomics 2008 9:481
    Content type: Research article Published on:

  18. Valine-glutamine (VQ) motif-containing proteins play important roles in plant growth, development and abiotic stress response. For many plant species, the VQ genes have been identified and their functions have be...

    Authors: Pengyun Chen, Fei wei, Shuaishuai Cheng, Liang Ma, Hantao Wang, Meng Zhang, Guangzhi Mao, Jianhua Lu, Pengbo Hao, Adeel Ahmad, Lijiao Gu, Qiang Ma, Aimin Wu, Hengling Wei and Shuxun Yu
    Citation: BMC Genomics 2020 21:795
    Content type: Research article Published on:

  19. In standard BLAST searches, no information other than the sequences of the query and the database entries is considered. However, in situations where two genes from different species have only borderline simil...

    Authors: Seán S ÓhÉigeartaigh, David Armisén, Kevin P Byrne and Kenneth H Wolfe
    Citation: BMC Genomics 2011 12:377
    Content type: Research article Published on:

  20. Root-colonizing fluorescent pseudomonads are known for their excellent abilities to protect plants against soil-borne fungal pathogens. Some of these bacteria produce an insecticidal toxin (Fit) suggesting tha...

    Authors: Beat Ruffner, Maria Péchy-Tarr, Monica Höfte, Guido Bloemberg, Jürg Grunder, Christoph Keel and Monika Maurhofer
    Citation: BMC Genomics 2015 16:609
    Content type: Research article Published on:

  21. Sclerotinia Stem Rot (SSR), caused by the fungal pathogen Sclerotinia sclerotiorum, is ubiquitous in cooler climates where soybean crops are grown. Breeding for resistance to SSR remains challenging in crops like...

    Authors: Wei Wei, Ana Carolina Oliveira Mesquita, Adriana de A. Figueiró, Xing Wu, Shilpa Manjunatha, Daniel P. Wickland, Matthew E. Hudson, Fernando C. Juliatti and Steven J. Clough
    Citation: BMC Genomics 2017 18:849
    Content type: Research article Published on:

  22. Mycelium-to-yeast transition in the human host is essential for pathogenicity by the fungus Paracoccidioides brasiliensis and both cell types are therefore critical to the establishment of paracoccidioidomycosis ...

    Authors: Rosângela V Andrade, Hugo C Paes, André M Nicola, Maria José A de Carvalho, Ana Lúcia Fachin, Renato S Cardoso, Simoneide S Silva, Larissa Fernandes, Silvana P Silva, Eduardo A Donadi, Elza T Sakamoto-Hojo, Geraldo AS Passos, Célia MA Soares, Marcelo M Brígido and Maria Sueli S Felipe
    Citation: BMC Genomics 2006 7:208
    Content type: Research article Published on:

  23. To explore the potential value of high-throughput genotyping assays in the analysis of large and complex genomes, we designed two highly multiplexed Illumina bead arrays using the GoldenGate SNP assay for gene...

    Authors: Nathalie Pavy, Betty Pelgas, Stéphanie Beauseigle, Sylvie Blais, France Gagnon, Isabelle Gosselin, Manuel Lamothe, Nathalie Isabel and Jean Bousquet
    Citation: BMC Genomics 2008 9:21
    Content type: Research article Published on:

  24. Rice (Oryza sativa) is critical for human nutrition worldwide. Due to a growing population, cultivars that produce high yields in high salinity soil are of major importance. Here we describe the discovery and mol...

    Authors: Risheng Chen, Yunfeng Cheng, Suying Han, Ben Van Handel, Ling Dong, Xinmin Li and Xiaoqing Xie
    Citation: BMC Genomics 2017 18:655
    Content type: Research article Published on:

  25. Large-scale RNAi screening has become an important technology for identifying genes involved in biological processes of interest. However, the quality of large-scale RNAi screening is often deteriorated by off...

    Authors: Pauli Rämö, Anna Drewek, Cécile Arrieumerlou, Niko Beerenwinkel, Houchaima Ben-Tekaya, Bettina Cardel, Alain Casanova, Raquel Conde-Alvarez, Pascale Cossart, Gábor Csúcs, Simone Eicher, Mario Emmenlauer, Urs Greber, Wolf-Dietrich Hardt, Ari Helenius, Christoph Kasper…
    Citation: BMC Genomics 2014 15:1162
    Content type: Research article Published on:

  26. MicroRNAs (miRNAs) are short noncoding RNAs (approximately 22 nucleotides in length) that play important roles in colorectal cancer (CRC) progression through silencing gene expression. Numerous dysregulated miRNA...

    Authors: Wei-Shone Chen, Ting-Wen Chen, Tzu-Hsien Yang, Ling-Yueh Hu, Hung-Wei Pan, Chung-Man Leung, Sung-Chou Li, Meng-Ru Ho, Chih-Wen Shu, Pei-Feng Liu, Shou-Yu Yu, Ya-Ting Tu, Wen-Chang Lin, Tony T Wu and Kuo-Wang Tsai
    Citation: BMC Genomics 2013 14(Suppl 5):S12
    Content type: Research Published on:

    This article is part of a Supplement: Volume 14 Supplement 5

  27. Infectious bursal disease virus (IBDV) causes acute, highly contagious, immunosuppressive, and lethal infectious disease in young chickens and mainly infects the bursa of Fabricius (BF). To investigate interac...

    Authors: Xuewei Huang, Junyan Zhang, Zengsu Liu, Meng Wang, Xiaolong Fan, Li Wang, Han Zhou, Yanping Jiang, Wen Cui, Xinyuan Qiao, Yigang Xu, Yijing Li and Lijie Tang
    Citation: BMC Genomics 2020 21:724
    Content type: Research article Published on:

  28. Dietary non-digestible carbohydrates stimulate the gut microflora and are therefore presumed to improve host resistance to intestinal infections. However, several strictly controlled rat infection studies show...

    Authors: Wendy Rodenburg, Jaap Keijer, Evelien Kramer, Carolien Vink, Roelof van der Meer and Ingeborg MJ Bovee-Oudenhoven
    Citation: BMC Genomics 2008 9:144
    Content type: Research article Published on:

  29. Epithelial and especially mucosal immunity represents the first line of defence against the plethora of potential pathogens trying to invade via the gastrointestinal tract. The salivary glands of the fruit fly...

    Authors: Ahmed Abdelsadik and Thomas Roeder
    Citation: BMC Genomics 2010 11:265
    Content type: Research article Published on:

  30. The Neisseria meningitidis (Nm) chromosome shows a high abundance of simple sequence DNA repeats (SSRs) that undergo stochastic, reversible mutations at high frequency. This mechanism is reflected in an extensive...

    Authors: Emilio Siena, Romina D’Aurizio, David Riley, Hervé Tettelin, Silvia Guidotti, Giulia Torricelli, E. Richard Moxon and Duccio Medini
    Citation: BMC Genomics 2016 17:843
    Content type: Research article Published on:

  31. Arthropod-borne viruses (arboviruses) transmitted by mosquito vectors cause many important emerging or resurging infectious diseases in humans including dengue, chikungunya and Zika. Understanding the co-evolu...

    Authors: Umberto Palatini, Pascal Miesen, Rebeca Carballar-Lejarazu, Lino Ometto, Ettore Rizzo, Zhijian Tu, Ronald P. van Rij and Mariangela Bonizzoni
    Citation: BMC Genomics 2017 18:512
    Content type: Research article Published on:

  32. Lumpy skin disease virus (LSDV) belongs to the genus Capripoxvirus and family Poxviridae. LSDV was endemic in most of Africa, the Middle East and Turkey, but since 2015, several outbreaks have been reported in ot...

    Authors: Priya Yadav, Ankeet Kumar, Sujith S Nath, Yashas Devasurmutt, Geetha Shashidhar, Madhvi Joshi, Apurvasinh Puvar, Sonal Sharma, Janvi Raval, Rameshchandra Pandit, Priyank Chavda, Sudeep Nagaraj, Yogisharadhya Revanaiah, Deepak Patil, S K Raval, Jigar Raval…
    Citation: BMC Genomics 2024 25:196
    Content type: Research Published on:

  33. The European shore crab, Carcinus maenas, is used widely in biomonitoring, ecotoxicology and for studies into host-pathogen interactions. It is also an important invasive species in numerous global locations. How...

    Authors: Bas Verbruggen, Lisa K. Bickley, Eduarda M. Santos, Charles R. Tyler, Grant D. Stentiford, Kelly S. Bateman and Ronny van Aerle
    Citation: BMC Genomics 2015 16:458
    Content type: Research article Published on:

  34. Transposable elements (TEs) are interspersed DNA sequences that can move or copy to new positions within a genome. TEs are believed to promote speciation and their activities play a significant role in human d...

    Authors: Lingling Jin, Ian McQuillan and Longhai Li
    Citation: BMC Genomics 2017 18(Suppl 9):862
    Content type: Research Published on:

    This article is part of a Supplement: Volume 18 Supplement 9

  35. The AIG (avrRpt2-induced gene) family of GTPases, characterized by the presence of a distinctive AIG1 domain, is mysterious in having a peculiar phylogenetic distribution, a predilection for undergoing expansi...

    Authors: Lijun Lu, Eric S. Loker, Si-Ming Zhang, Sarah K. Buddenborg and Lijing Bu
    Citation: BMC Genomics 2020 21:190
    Content type: Research article Published on:

  36. Metarhizium anisopliae is an entomopathogenic fungus used in the biological control of some agricultural insect pests, and efforts are underway to use this fungus in the control of insect-borne human diseases. A ...

    Authors: Charley Christian Staats, Ângela Junges, Rafael Lucas Muniz Guedes, Claudia Elizabeth Thompson, Guilherme Loss de Morais, Juliano Tomazzoni Boldo, Luiz Gonzaga Paula de Almeida, Fábio Carrer Andreis, Alexandra Lehmkuhl Gerber, Nicolau Sbaraini, Rana Louise de Andrade da Paixão, Leonardo Broetto, Melissa Landell, Lucélia Santi, Walter Orlando Beys-da-Silva, Carolina Pereira Silveira…
    Citation: BMC Genomics 2014 15:822
    Content type: Research article Published on:

  37. Lactococcus lactis is the most used species in the dairy industry. Its ability to adapt to technological stresses, such as oxidative stress encountered during stirring in the first stages of the cheese-making pro...

    Authors: Marina Cretenet, Gwenaëlle Le Gall, Udo Wegmann, Sergine Even, Claire Shearman, Régis Stentz and Sophie Jeanson
    Citation: BMC Genomics 2014 15:1054
    Content type: Research article Published on:

  38. DNA microarray is an invaluable tool for gene expression explorations. In the two-dye microarray, fluorescence intensities of two samples, each labeled with a different dye, are compared after hybridization. T...

    Authors: Mugdha Gadgil, Wei Lian, Chetan Gadgil, Vivek Kapur and Wei-Shou Hu
    Citation: BMC Genomics 2005 6:66
    Content type: Methodology article Published on:

  39. Runs of homozygosity (ROH) are continuous homozygous segments of the DNA sequence. They have been applied to quantify individual autozygosity and used as a potential inbreeding measure in livestock species. Th...

    Authors: Elisa Peripolli, Nedenia Bonvino Stafuzza, Danísio Prado Munari, André Luís Ferreira Lima, Renato Irgang, Marco Antonio Machado, João Cláudio do Carmo Panetto, Ricardo Vieira Ventura, Fernando Baldi and Marcos Vinícius Gualberto Barbosa da Silva
    Citation: BMC Genomics 2018 19:34
    Content type: Research article Published on:

  40. Influenza A virus (IAV) is a major public health concern, being responsible for the death of approximately half a million people each year. Zoonotic transmissions of the virus from swine and avian origin hav...

    Authors: Biruhalem Taye, Hui Chen, Myint Zu Myaing, Boon Huan Tan, Sebastian Maurer-Stroh and Richard J. Sugrue
    Citation: BMC Genomics 2017 18:420
    Content type: Research article Published on:

  41. Gynogenesis is one of unisexual reproduction modes in vertebrates, and produces all-female individuals with identical genetic background. In sexual reproduction vertebrates, the roles of primordial germ cells ...

    Authors: Wei Liu, Shi-Zhu Li, Zhi Li, Yang Wang, Xi-Yin Li, Jian-Xiang Zhong, Xiao-Juan Zhang, Jun Zhang, Li Zhou and Jian-Fang Gui
    Citation: BMC Genomics 2015 16:971
    Content type: Research article Published on:

  42. Subfertility is a major problem in modern horse breeding. Especially, mares without clinical signs of reproductive diseases, without known uterine pathogens and no evidence of inflammation but not becoming pre...

    Authors: Katharina S. Weber, Karen Wagener, Miguel Blanco, Stefan Bauersachs and Heinrich Bollwein
    Citation: BMC Genomics 2021 22:377
    Content type: Research article Published on:

  43. De novo assembly of transcript sequences produced by next-generation sequencing technologies offers a rapid approach to obtain expressed gene sequences for non-model organisms. Ammopiptanthus mongolicus, a super-...

    Authors: Yijun Zhou, Fei Gao, Ran Liu, Jinchao Feng and Hongjie Li
    Citation: BMC Genomics 2012 13:266
    Content type: Research article Published on:

  44. The moss Physcomitrella patens is an emerging plant model system due to its high rate of homologous recombination, haploidy, simple body plan, physiological properties as well as phylogenetic position. Available ...

    Authors: Stefan A Rensing, Dana Fritzowsky, Daniel Lang and Ralf Reski
    Citation: BMC Genomics 2005 6:43
    Content type: Research article Published on:

  45. The sample ascertainment bias due to complex population structures remains a major challenge in genome-wide investigations of complex traits. In this study we derived the high-resolution population structure a...

    Authors: Gertrud Grilz-Seger, Thomas Druml, Markus Neuditschko, Max Dobretsberger, Michaela Horna and Gottfried Brem
    Citation: BMC Genomics 2019 20:174
    Content type: Research article Published on:

  46. In plants carotenoids play an important role in the photosynthetic process and photo-oxidative protection, and are the substrate for the synthesis of abscisic acid and strigolactones. In addition to their prot...

    Authors: Pasqualina Colasuonno, Maria Luisa Lozito, Ilaria Marcotuli, Domenica Nigro, Angelica Giancaspro, Giacomo Mangini, Pasquale De Vita, Anna Maria Mastrangelo, Nicola Pecchioni, Kelly Houston, Rosanna Simeone, Agata Gadaleta and Antonio Blanco
    Citation: BMC Genomics 2017 18:122
    Content type: Research article Published on:

  47. Ochroconis mirabilis, a recently introduced water-borne dematiaceous fungus, is occasionally isolated from human skin lesions and nails. We identified an isolate of O. mirabilis from a...

    Authors: Su Mei Yew, Chai Ling Chan, Chee Sian Kuan, Yue Fen Toh, Yun Fong Ngeow, Shiang Ling Na, Kok Wei Lee, Chee-Choong Hoh, Wai-Yan Yee and Kee Peng Ng
    Citation: BMC Genomics 2016 17:91
    Content type: Research article Published on:

  48. Flagellar motility is an efficient means of movement that allows bacteria to successfully colonize and compete with other microorganisms within their respective environments. The production and functioning of ...

    Authors: Pieter De Maayer, Talia Pillay and Teresa A. Coutinho
    Citation: BMC Genomics 2020 21:670
    Content type: Research article Published on:

  49. Anthocyanins are common substances with many agro-food industrial applications. However, anthocyanins are generally considered to be found only in natural plants. Our previous study isolated and purified the f...

    Authors: Congfan Bu, Qian Zhang, Jie Zeng, Xiyue Cao, Zhaonan Hao, Dairong Qiao, Yi Cao and Hui Xu
    Citation: BMC Genomics 2020 21:29
    Content type: Research article Published on:

  50. Our previous study found that more than 500 transcripts significantly increased in abundance in the zebrafish and mouse several hours to days postmortem relative to live controls. The current literature sugges...

    Authors: Peter A. Noble and Alexander E. Pozhitkov
    Citation: BMC Genomics 2018 19:675
    Content type: Research article Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • 2022 Citation Impact
    4.4 - 2-year Impact Factor
    4.7 - 5-year Impact Factor
    1.189 - SNIP (Source Normalized Impact per Paper)
    1.107 - SJR (SCImago Journal Rank)

    2023 Speed
    23 days submission to first editorial decision for all manuscripts (Median)
    137 days submission to accept (Median)

    2023 Usage
    7,167,242 downloads
    4,454 Altmetric mentions

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us