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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Qualitative alterations or abnormal expression of microRNAs (miRNAs) in colon cancer have mainly been demonstrated in primary tumors. Poorly overlapping sets of oncomiRs, tumor suppressor miRNAs and metastamiR...

    Authors: Silvia Pizzini, Andrea Bisognin, Susanna Mandruzzato, Marta Biasiolo, Arianna Facciolli, Lisa Perilli, Elisabetta Rossi, Giovanni Esposito, Massimo Rugge, Pierluigi Pilati, Simone Mocellin, Donato Nitti, Stefania Bortoluzzi and Paola Zanovello
    Citation: BMC Genomics 2013 14:589
    Content type: Research article Published on:

  2. Pre-exposing plants to abiotic stresses can induce stress memory, which is crucial for adapting to subsequent stress exposure. Although numerous genes involved in salt stress response have been identified, the...

    Authors: Zhiying Zhu, Yan Dai, Guangrun Yu, Xin Zhang, Qi Chen, Xiaobing Kou, Eid M. Mehareb, Ghulam Raza, Baohong Zhang, Baohua Wang, Kai Wang and Jinlei Han
    Citation: BMC Genomics 2023 24:726
    Content type: Research Published on:

  3. Because the cost of cereals is unstable and represents a large part of production charges for meat-type chicken, there is an urge to formulate alternative diets from more cost-effective feedstuff. We have rece...

    Authors: C. Desert, E. Baéza, M. Aite, M. Boutin, A. Le Cam, J. Montfort, M. Houee-Bigot, Y. Blum, P. F. Roux, C. Hennequet-Antier, C. Berri, S. Metayer-Coustard, A. Collin, S. Allais, E. Le Bihan, D. Causeur…
    Citation: BMC Genomics 2018 19:187
    Content type: Research article Published on:

  4. Matricaria recutita (German chamomile) and Chamaemelum nobile (Roman chamomile) belong to the botanical family Asteraceae. These two herbs are not only morphologically distinguishable, but their secondary metabol...

    Authors: Yuling Tai, Xiaojuan Hou, Chun Liu, Jiameng Sun, Chunxiao Guo, Ling Su, Wei Jiang, Chengcheng Ling, Chengxiang Wang, Huanhuan Wang, Guifang Pan, Xiongyuan Si and Yi Yuan
    Citation: BMC Genomics 2020 21:169
    Content type: Research article Published on:

  5. Intron mediated enhancement (IME) is the potential of introns to enhance the expression of its respective gene. This essential function of introns has been observed in a wide range of species, including fungi,...

    Authors: Georg Back and Dirk Walther
    Citation: BMC Genomics 2021 22:390
    Content type: Research Published on:

  6. Schisandra sphenanthera is an extremely important medicinal plant, and its main medicinal component is bioactive lignans. The S. sphenanthera fruit is preferred by the majority of consumers, and the root, stem, a...

    Authors: Boshi Sun, Peng Wang, Meng Guan, Entong Jia, Qian Li, Jun Li, Ziyun Zhou and Pengda Ma
    Citation: BMC Genomics 2023 24:607
    Content type: Research Published on:

  7. Human blood develops from self-renewing hematopoietic stem cells to terminal lineages and necessitates regulator and effector gene expression changes; each cell type specifically expresses a subset of genes to...

    Authors: Brian J Abraham, Kairong Cui, Qingsong Tang and Keji Zhao
    Citation: BMC Genomics 2013 14:193
    Content type: Research article Published on:

  8. Rose is one of the most popular flowers in the wold. Its field growth and quality are negatively affected by aphids. However, the defence mechanisms used by rose plants against aphids are unclear. Therefore, t...

    Authors: Penghua Gao, Hao Zhang, Huijun Yan, Ningning Zhou, Bo Yan, Yuanlan Fan, Kaixue Tang and Xianqin Qiu
    Citation: BMC Genomics 2021 22:885
    Content type: Research Published on:

  9. Gram-negative bacteria are important pathogens in cattle, causing severe infectious diseases, including mastitis. Lipopolysaccharides (LPS) are components of the outer membrane of Gram-negative bacteria and cr...

    Authors: Yahui Gao, Jianbin Li, Gaozhan Cai, Yujiao Wang, Wenjing Yang, Yanqin Li, Xiuxin Zhao, Rongling Li, Yundong Gao, Wenbin Tuo, Ransom L. Baldwin VI, Cong-jun Li, Lingzhao Fang and George E. Liu
    Citation: BMC Genomics 2022 23:338
    Content type: Research Published on:

  10. Durum wheat often faces water scarcity and high temperatures, two events that usually occur simultaneously in the fields. Here we report on the stress responsive strategy of two durum wheat cultivars, characte...

    Authors: Alessio Aprile, Lenka Havlickova, Riccardo Panna, Caterina Marè, Grazia M Borrelli, Daniela Marone, Carla Perrotta, Patrizia Rampino, Luigi De Bellis, Vladislav Curn, Anna M Mastrangelo, Fulvia Rizza and Luigi Cattivelli
    Citation: BMC Genomics 2013 14:821
    Content type: Research article Published on:

  11. Bud dormancy is a critical developmental process that allows perennial plants to survive unfavorable environmental conditions. Pear is one of the most important deciduous fruit trees in the world, but the mech...

    Authors: Guoqin Liu, Wanshun Li, Penghua Zheng, Tong Xu, Lijuan Chen, Dongfeng Liu, Sayed Hussain and Yuanwen Teng
    Citation: BMC Genomics 2012 13:700
    Content type: Research article Published on:

  12. The initiating nucleotide found at the 5’ end of primary transcripts has a distinctive triphosphorylated end that distinguishes these transcripts from all other RNA species. Recognizing this distinction is key...

    Authors: Laurence Ettwiller, John Buswell, Erbay Yigit and Ira Schildkraut
    Citation: BMC Genomics 2016 17:199
    Content type: Methodology article Published on:

  13. Downy mildew disease of sunflower, caused by the obligate biotrophic oomycete Plasmopara halstedii, can have significant economic impact on sunflower cultivation. Using high-throughput whole transcriptome sequenc...

    Authors: Sakshi Bharti, Sebastian Ploch and Marco Thines
    Citation: BMC Genomics 2023 24:140
    Content type: Research Published on:

  14. Peanut zygotes typically divide a few times to form a pre-embryo before further embryonic development halts under normal day/night photoperiods. Ovary elongation, however, continuesforming a downward growing p...

    Authors: Ye Zhang, Pengfei Wang, Han Xia, Chuanzhi Zhao, Lei Hou, Changsheng Li, Chao Gao, Shuzhen Zhao and Xingjun Wang
    Citation: BMC Genomics 2016 17:606
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2016 17:836

  15. In fleshy fruit, abscission of fully ripe fruit is a process intimately linked to the ripening process. In many fruit-tree species, such as olive (Olea europaea L. cv. Picual), there is a coupling of the full rip...

    Authors: Ruben Parra, Miguel A Paredes, Isabel M Sanchez-Calle and Maria C Gomez-Jimenez
    Citation: BMC Genomics 2013 14:866
    Content type: Research article Published on:

  16. Ginsenoside, as the main active substance in ginseng, has the function of treating various diseases. However, the ginsenosides content of cultivated ginseng is obviously affected by the growth years, but the m...

    Authors: Xiaoxue Fang, Manqi Wang, Xinteng Zhou, Huan Wang, Huaying Wang and Hongxing Xiao
    Citation: BMC Genomics 2022 23:325
    Content type: Research Published on:

  18. Two cytidine analogues, gemcitabine and cytosine arabinoside (AraC), are widely used in the treatment of a variety of cancers with a large individual variation in response. To identify potential genetic biomar...

    Authors: Liang Li, Brooke L Fridley, Krishna Kalari, Nifang Niu, Gregory Jenkins, Anthony Batzler, Ryan P Abo, Daniel Schaid and Liewei Wang
    Citation: BMC Genomics 2014 15:93
    Content type: Research article Published on:

  19. Wild barley is adapted to highly diverse environments throughout its geographical distribution range. Transcriptome sequencing of differentially adapted wild barley ecotypes from contrasting environments contr...

    Authors: Girma Bedada, Anna Westerbergh, Thomas Müller, Eyal Galkin, Eyal Bdolach, Menachem Moshelion, Eyal Fridman and Karl J Schmid
    Citation: BMC Genomics 2014 15:995
    Content type: Research article Published on:

  20. Regulatory adjustments to acute and chronic temperature changes are highly important for aquatic ectotherms because temperature affects their metabolic rate as well as the already low oxygen concentration in w...

    Authors: Dörthe Becker, Yann Reydelet, Jacqueline A. Lopez, Craig Jackson, John K. Colbourne, Susan Hawat, Michael Hippler, Bettina Zeis and Rüdiger J. Paul
    Citation: BMC Genomics 2018 19:376
    Content type: Research article Published on:

  21. Understanding how human cells in tissue culture adapt to hypothermia may aid in developing new clinical procedures for improved ischemic and hypothermic protection. Human coronary artery endothelial cells grow...

    Authors: Michael AJ Zieger, Mahesh P Gupta and Mu Wang
    Citation: BMC Genomics 2011 12:630
    Content type: Research article Published on:

  22. In recent years advances have been made in the investigative methods of molecular background of canine heart disease. Studies have been conducted to identify specific genes which, when pathologically expressed...

    Authors: Magdalena Hulanicka, Magdalena Garncarz, Marta Parzeniecka-Jaworska and Michał Jank
    Citation: BMC Genomics 2014 15:509
    Content type: Research article Published on:

  23. Spermatogonial stem cells (SSCs) are the foundation cells for continual spermatogenesis and germline regeneration in mammals. SSC activities reside in the undifferentiated spermatogonial population, and curren...

    Authors: Shuang Li, Rong-Ge Yan, Xue Gao, Zhen He, Shi-Xin Wu, Yu-Jun Wang, Yi-Wen Zhang, Hai-Ping Tao, Xiao-Na Zhang, Gong-Xue Jia and Qi-En Yang
    Citation: BMC Genomics 2024 25:138
    Content type: Research Published on:

  24. Stem cells and their niches are studied in many systems, but mammalian germ stem cells (GSC) and their niches are still poorly understood. In rat testis, spermatogonia and undifferentiated Sertoli cells prolif...

    Authors: Stephan Ryser, Dominique Glauser, Michelle Vigier, Yong Qiang Zhang, Philippe Tachini, Werner Schlegel, Philippe Durand and Irmgard Irminger-Finger
    Citation: BMC Genomics 2011 12:29
    Content type: Research article Published on:

  25. Ashbya gossypii is a filamentous Saccharomycete used for the industrial production of riboflavin that has been recently explored as a host system for recombinant protein production. To gain insight into the prote...

    Authors: Tatiana Q Aguiar, Orquídea Ribeiro, Mikko Arvas, Marilyn G Wiebe, Merja Penttilä and Lucília Domingues
    Citation: BMC Genomics 2014 15:1137
    Content type: Research article Published on:

  26. Mesenchymal Stromal/Stem Cells (MSCs), isolated under the criteria established by the ISCT, still have a poorly characterized phenotype that is difficult to distinguish from similar cell populations. Although ...

    Authors: Beatriz Roson-Burgo, Fermin Sanchez-Guijo, Consuelo Del Cañizo and Javier De Las Rivas
    Citation: BMC Genomics 2016 17:944
    Content type: Research Article Published on:

  27. Gene expression regulation is still poorly documented in bacteria with highly reduced genomes. Understanding the evolution and mechanisms underlying the regulation of gene transcription in Buchnera aphidicola, th...

    Authors: Lilia Brinza, Federica Calevro, Gabrielle Duport, Karen Gaget, Christian Gautier and Hubert Charles
    Citation: BMC Genomics 2010 11:666
    Content type: Research article Published on:

  28. Dictyostelium discoideum, a microbial model for social evolution, is known to distinguish self from non-self and show genotype-dependent behavior during chimeric development. Aside from a small number of cell-cel...

    Authors: Si I Li, Neil J Buttery, Christopher RL Thompson and Michael D Purugganan
    Citation: BMC Genomics 2014 15:616
    Content type: Research article Published on:

  29. Rosaceae species are economically highly relevant crops. Their cultivation systems are constrained by phytopathogens causing severe losses. Plants respond to invading pathogens through signaling mechanisms, a ...

    Authors: Laura Foix, Anna Nadal, Maja Zagorščak, Živa Ramšak, Anna Esteve-Codina, Kristina Gruden and Maria Pla
    Citation: BMC Genomics 2021 22:360
    Content type: Research article Published on:

  30. Highly adapted plant species are able to alter their root architecture to improve nutrient uptake and thrive in environments with limited nutrient supply. Cluster roots (CRs) are specialised structures of dens...

    Authors: David Secco, Huixia Shou, James Whelan and Oliver Berkowitz
    Citation: BMC Genomics 2014 15:230
    Content type: Research article Published on:

  31. The pond snail, Lymnaea stagnalis (L. stagnalis), has served as a valuable model organism for neurobiology studies due to its simple and easily accessible central nervous system (CNS). L. stagnalis has been widel...

    Authors: Martina Rosato, Brittany Hoelscher, Zhenguo Lin, Chidera Agwu and Fenglian Xu
    Citation: BMC Genomics 2021 22:637
    Content type: Research Published on:

  32. The flower colour of agricultural products is very important for their commercial value, which is mainly attributed to the accumulation of anthocyanins. Light is one of the key environmental factors that affec...

    Authors: Yan Hong, Xingjiao Tang, He Huang, Yuan Zhang and Silan Dai
    Citation: BMC Genomics 2015 16:202
    Content type: Research article Published on:

  33. Malaria pathogenesis relies on sexual gametocyte forms of the malaria parasite to be transmitted between the infected human and the mosquito host but the molecular mechanisms controlling gametocytogenesis rema...

    Authors: Riëtte van Biljon, Roelof van Wyk, Heather J. Painter, Lindsey Orchard, Janette Reader, Jandeli Niemand, Manuel Llinás and Lyn-Marie Birkholtz
    Citation: BMC Genomics 2019 20:920
    Content type: Research article Published on:

  34. The pistil is an essential part of flowers that functions in the differentiation of the sexes and reproduction in plants. The stigma on the pistil can accept pollen to allow fertilization and seed development....

    Authors: Zhenyang Liao, Fei Dong, Juan Liu, Lele Xu, Amy Marshall-Colon and Ray Ming
    Citation: BMC Genomics 2022 23:8
    Content type: Research Published on:

  35. The “Assay for Transposase Accessible Chromatin sequencing” (ATAC-seq) is an efficient and easy to implement protocol to measure chromatin accessibility that has been widely used in multiple applications study...

    Authors: Hao Zhang, Michael E. Rice, Joseph W. Alvin, Dominique Farrera-Gaffney, James J. Galligan, Michael D. L. Johnson and Darren A. Cusanovich
    Citation: BMC Genomics 2022 23:214
    Content type: Research Published on:

  36. Successful reprogramming of a somatic genome to produce a healthy clone by somatic cells nuclear transfer (SCNT) is a rare event and the mechanisms involved in this process are poorly defined. When serial or s...

    Authors: Nelida Rodriguez-Osorio, Zhongde Wang, Poothappillai Kasinathan, Grier P Page, James M Robl and Erdogan Memili
    Citation: BMC Genomics 2009 10:190
    Content type: Research article Published on:

  37. Understanding the mechanisms underlying alcohol metabolism and its regulation, including the effect of polymorphisms in alcohol-metabolizing enzymes, is crucial for research on Fetal Alcohol Spectrum Disorders...

    Authors: Melina Vieiros, Elisabet Navarro-Tapia, Anna Ramos-Triguero, Àgueda García-Meseguer, Leopoldo Martínez, Óscar García-Algar and Vicente Andreu-Fernández
    Citation: BMC Genomics 2024 25:610
    Content type: Research Published on:

  38. S. aureus is one of the main pathogens responsible for the intra-mammary infection in dairy ruminants. Although much work has been carried out to understand the complex physiological and cellular events that occu...

    Authors: Paola Cremonesi, Rossana Capoferri, Giuliano Pisoni, Marcello Del Corvo, Francesco Strozzi, Rachel Rupp, Hugues Caillat, Paola Modesto, Paolo Moroni, John L Williams, Bianca Castiglioni and Alessandra Stella
    Citation: BMC Genomics 2012 13:540
    Content type: Research article Published on:

  39. Apomixis, an asexual mode of plant reproduction, is a genetically heritable trait evolutionarily related to sexuality, which enables the fixation of heterozygous genetic combinations through the development of...

    Authors: Maricel Podio, Carolina Colono, Lorena Siena, Juan Pablo A. Ortiz and Silvina Claudia Pessino
    Citation: BMC Genomics 2021 22:185
    Content type: Research article Published on:

  40. The mechanism of body growth in mammals is poorly understood. Here, we investigated the regulatory networks involved in body growth through transcriptomic analysis of pituitary and epiphyseal tissues of smalle...

    Authors: Jun Fang, Dong Zhang, Jun Wei Cao, Li Zhang, Chun Xia Liu, Yan Ping Xing, Feng Wang, Hong Yang Xu, Shi Chao Wang, Yu Ling, Wei Wang, Yan Ru Zhang and Huan Min Zhou
    Citation: BMC Genomics 2021 22:58
    Content type: Research article Published on:

  41. Pathogens stimulate immune functions of macrophages. Macrophages are a key sentinel cell regulating the response to pathogenic ligands and orchestrating the direction of the immune response. Our study aimed at...

    Authors: Felix N. Toka, Kiera Dunaway, Felicia Smaltz, Lidia Szulc-Dąbrowska, Jenny Drnevich, Matylda Barbara Mielcarska, Magdalena Bossowska-Nowicka and Matthias Schweizer
    Citation: BMC Genomics 2019 20:15
    Content type: Research article Published on:

  42. Lung cancer is the leading cause of cancer death in both men and women. The most common lung cancer subtype is non-small cell lung carcinoma (NSCLC) comprising about 85% of all cases. NSCLC can be further divi...

    Authors: Yuqing Hang, Josh Burns, Benjamin T. Shealy, Rini Pauly, Stephen P. Ficklin and Frank A. Feltus
    Citation: BMC Genomics 2022 23:350
    Content type: Research Published on:

  43. Human disease genes can be distinguished from essential (embryonically lethal) and non-disease genes using gene attributes. Such attributes include gene age, tissue specificity of expression, regulatory capaci...

    Authors: Shivashankar H Nagaraj, Aaron Ingham and Antonio Reverter
    Citation: BMC Genomics 2010 11(Suppl 4):S23
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 11 Supplement 4

  44. Dimorphic seeds from Suaeda aralocaspica exhibit different germination behaviors that are thought to be a bet-hedging strategy advantageous in harsh and unpredictable environments. To understand the molecular mec...

    Authors: Lei Wang, Hong-Ling Wang, Lan Yin and Chang-Yan Tian
    Citation: BMC Genomics 2017 18:806
    Content type: Research article Published on:

  45. Phloem-feeding aphids deprive plants of assimilates, but mostly manage to avoid causing the mechanical tissue damage inflicted by chewing insects. Nevertheless, jasmonate signalling that is induced by infestat...

    Authors: Anna Kuśnierczyk, Diem HT Tran, Per Winge, Tommy S Jørstad, John C Reese, Joanna Troczyńska and Atle M Bones
    Citation: BMC Genomics 2011 12:423
    Content type: Research article Published on:

  46. Aspergillus fumigatus has to cope with a combination of several stress types while colonizing the human body. A functional interplay between these different stress responses can increase the chances of survival f...

    Authors: Vivien Kurucz, Thomas Krüger, Károly Antal, Anna-Maria Dietl, Hubertus Haas, István Pócsi, Olaf Kniemeyer and Tamás Emri
    Citation: BMC Genomics 2018 19:357
    Content type: Research article Published on:

  47. Diapause is a seasonal dormancy that allows organisms to survive unfavorable conditions and optimizes the timing of reproduction and growth. Emergence from diapause reverses the state of arrested development a...

    Authors: Vittoria Roncalli, Matthew C. Cieslak, Ann M. Castelfranco, Russell R. Hopcroft, Daniel K. Hartline and Petra H. Lenz
    Citation: BMC Genomics 2021 22:409
    Content type: Research article Published on:

    The Correction to this article has been published in BMC Genomics 2021 22:659

  48. Saffron crocus (Crocus sativus) is a valuable spice with medicinal uses in gynaecopathia and nervous system diseases. Identify flowering regulatory genes plays a vital role in increasing flower numbers, thereby r...

    Authors: Xiaodong Qian, Youping Sun, Guifen Zhou, Yumei Yuan, Jing Li, Huilian Huang, Limin Xu and Liqin Li
    Citation: BMC Genomics 2019 20:857
    Content type: Research article Published on:

  49. Type I interferons are major players against viral infections and mediate their function by the induction of Interferon regulated genes (IRGs). Recently, it became obvious that these cytokines have a multitude...

    Authors: Susanne Röll, Stefan Härtle, Thomas Lütteke, Bernd Kaspers and Sonja Härtle
    Citation: BMC Genomics 2017 18:264
    Content type: Research article Published on:

  50. Genetic aberrations in hepatocellular carcinoma (HCC) are well known, but the functional consequences of such aberrations remain poorly understood.

    Authors: Christos Dimitrakopoulos, Sravanth Kumar Hindupur, Marco Colombi, Dritan Liko, Charlotte K. Y. Ng, Salvatore Piscuoglio, Jonas Behr, Ariane L. Moore, Jochen Singer, Hans-Joachim Ruscheweyh, Matthias S. Matter, Dirk Mossmann, Luigi M. Terracciano, Michael N. Hall and Niko Beerenwinkel
    Citation: BMC Genomics 2021 22:592
    Content type: Research article Published on:

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BMC Genomics

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