Skip to main content

Articles

6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 14 of 128

  2. Formation of compression (CW) and opposite wood (OW) in branches and bent trunks is an adaptive feature of conifer trees in response to various displacement forces, such as gravity, wind, snow and artificial b...

    Authors: Xinguo Li, Xiaohui Yang and Harry X Wu
    Citation: BMC Genomics 2013 14:768
    Content type: Research article Published on:

  3. Filarial nematodes cause debilitating human diseases. While treatable, recent evidence suggests drug resistance is developing, necessitating the development of novel targets and new treatment options. Although...

    Authors: Ashley N. Luck, Kathryn G. Anderson, Colleen M. McClung, Nathan C. VerBerkmoes, Jeremy M. Foster, Michelle L. Michalski and Barton E. Slatko
    Citation: BMC Genomics 2015 16:920
    Content type: Research article Published on:

  4. The putative methyltransferase LaeA is a global regulator that affects the expression of multiple secondary metabolite gene clusters in several fungi. In Trichoderma reesei, its ortholog LAE1 appears to predomina...

    Authors: Erzsébet Fekete, Levente Karaffa, Razieh Karimi Aghcheh, Zoltán Németh, Éva Fekete, Anita Orosz, Melinda Paholcsek, Anikó Stágel and Christian P Kubicek
    Citation: BMC Genomics 2014 15:447
    Content type: Research article Published on:

  6. Nematodes are a major group of soil inhabiting organisms. Heterorhabditis nematodes are insect-pathogenic nematodes and live in a close symbiotic association with Photorhabdus bacteria. Heterorhabditis-Photorhabd...

    Authors: Chaitra G. Bhat, Roli Budhwar, Jeffrey Godwin, Adler R. Dillman, Uma Rao and Vishal S. Somvanshi
    Citation: BMC Genomics 2022 23:741
    Content type: Research Published on:

  7. Super-enhancer RNAs (seRNAs) are a kind of noncoding RNA transcribed from super-enhancer regions. The regulation mechanism and functional role of seRNAs are still unclear. Although super-enhancers play a criti...

    Authors: Hao-Chun Chang, Hsuan-Cheng Huang, Hsueh-Fen Juan and Chia-Lang Hsu
    Citation: BMC Genomics 2019 20(Suppl 10):896
    Content type: Research Published on:

    This article is part of a Supplement: Volume 20 Supplement 10

  8. Photodynamic therapy (PDT) involves systemic or topical administration of a lesion-localizing photosensitizer or its precursor, followed by irradiation of visible light to cause singlet oxygen-induced damage t...

    Authors: Lina Cekaite, Qian Peng, Andrew Reiner, Susan Shahzidi, Siri Tveito, Ingegerd E Furre and Eivind Hovig
    Citation: BMC Genomics 2007 8:273
    Content type: Research article Published on:

  10. Cell lines are an indispensable tool in biomedical research and often used as surrogates for tissues. Although there are recognized important cellular and transcriptomic differences between cell lines and tiss...

    Authors: Camila M. Lopes-Ramos, Joseph N. Paulson, Cho-Yi Chen, Marieke L. Kuijjer, Maud Fagny, John Platig, Abhijeet R. Sonawane, Dawn L. DeMeo, John Quackenbush and Kimberly Glass
    Citation: BMC Genomics 2017 18:723
    Content type: Research article Published on:

  11. Pseudogenes have been implicated for their role in regulating cellular differentiation and organismal development. However, their role in promoting cancer-associated differentiation has not been well-studied. ...

    Authors: Govada Pravallika and Ramalingam Rajasekaran
    Citation: BMC Genomics 2024 25:135
    Content type: Research Published on:

  12. The serious feeding- and microbiota-associated intestinal disease, necrotizing enterocolitis (NEC), occurs mainly in infants born prematurely (5-10% of all newborns) and most frequently after formula-feeding. ...

    Authors: Fei Gao, Juyong Zhang, Pingping Jiang, Desheng Gong, Jun-Wen Wang, Yudong Xia, Mette Viberg Østergaard, Jun Wang and Per Torp Sangild
    Citation: BMC Genomics 2014 15:716
    Content type: Research article Published on:

  13. Aquaculture of piscivorous fish is in continual expansion resulting in a global requirement to reduce the dependence on wild caught fish for generation of fishmeal and fish oil. Plant proteins represent a suit...

    Authors: Luca Tacchi, Christopher J Secombes, Ralph Bickerdike, Michael A Adler, Claudia Venegas, Harald Takle and Samuel AM Martin
    Citation: BMC Genomics 2012 13:363
    Content type: Research article Published on:

  14. The carnitine acetyltransferase (CrAT) is a mitochondrial matrix protein that directly influences intramitochondrial acetyl-CoA pools. Murine CrAT is encoded by a single gene located in the opposite orientatio...

    Authors: Klemens Kienesberger, Aniko Ginta Pordes, Thomas Georg Völk and Reinhold Hofbauer
    Citation: BMC Genomics 2014 15:514
    Content type: Research article Published on:

  15. Sclerotinia sclerotiorum causes stem rot in Brassica napus, which leads to lodging and severe yield losses. Although recent studies have explored significant progress in the characteri...

    Authors: Shirin Seifbarghi, M. Hossein Borhan, Yangdou Wei, Cathy Coutu, Stephen J. Robinson and Dwayne D. Hegedus
    Citation: BMC Genomics 2017 18:266
    Content type: Research article Published on:

  17. The occurrence of liver cancer is higher in males than in females, and the incidence increases during aging. Signaling pathways regulated by retinoid × receptor α (RXRα) are involved in hepatocellular carcinog...

    Authors: Minglei Guo, Lei Gong, Lin He, Lois Lehman-McKeeman and Yu-Jui Yvonne Wan
    Citation: BMC Genomics 2008 9:403
    Content type: Research article Published on:

  18. Examination of complex biological systems has long been achieved through methodical investigation of the system’s individual components. While informative, this strategy often leads to inappropriate conclusion...

    Authors: Sarah L. Grady, Stephanie A. Malfatti, Thusitha S. Gunasekera, Brian K. Dalley, Matt G. Lyman, Richard C. Striebich, Michael B. Mayhew, Carol L. Zhou, Oscar N. Ruiz and Larry C. Dugan
    Citation: BMC Genomics 2017 18:334
    Content type: Research article Published on:

  20. Histone modifications play an important role in gene regulation. Acetylation of histone 3 lysine 9 (H3K9ac) is generally associated with transcription initiation and unfolded chromatin, thereby positively infl...

    Authors: Anton Kratz, Erik Arner, Rintaro Saito, Atsutaka Kubosaki, Jun Kawai, Harukazu Suzuki, Piero Carninci, Takahiro Arakawa, Masaru Tomita, Yoshihide Hayashizaki and Carsten O Daub
    Citation: BMC Genomics 2010 11:257
    Content type: Research article Published on:

  21. Mitochondria are semi-autonomous, semi-self-replicating organelles harboring their own DNA (mitochondrial DNA, mtDNA), and their dysregulation is involved in the development of various diseases. While mtDNA do...

    Authors: Masaki Takasugi, Shintaro Yagi, Keiji Hirabayashi and Kunio Shiota
    Citation: BMC Genomics 2010 11:481
    Content type: Research article Published on:

  22. The transcription factor OCT4 is highly expressed in pluripotent embryonic stem cells which are derived from the inner cell mass of mammalian blastocysts. Pluripotency and self renewal are controlled by a tran...

    Authors: Lukas Chavez, Abha S Bais, Martin Vingron, Hans Lehrach, James Adjaye and Ralf Herwig
    Citation: BMC Genomics 2009 10:314
    Content type: Research article Published on:

  23. Bud dormancy is a crucial stage in perennial trees and allows survival over winter to ensure optimal flowering and fruit production. Recent work highlighted physiological and molecular events occurring during ...

    Authors: Noémie Vimont, Mathieu Fouché, José Antonio Campoy, Meixuezi Tong, Mustapha Arkoun, Jean-Claude Yvin, Philip A. Wigge, Elisabeth Dirlewanger, Sandra Cortijo and Bénédicte Wenden
    Citation: BMC Genomics 2019 20:974
    Content type: Research article Published on:

  24. As the characteristic functional component in ginger, gingerols possess several health-promoting properties. Long non-coding RNAs (lncRNAs) act as crucial regulators of diverse biological processes. However, l...

    Authors: Wenlin Zhang, Yang Yang, Xuedong Zhu, Suyu Yang, Ximei Liao, Honglei Li, Zhexin Li, Qinhong Liao, Jianmin Tang, Guohua Zhao and Lin Wu
    Citation: BMC Genomics 2023 24:490
    Content type: Research Published on:

  25. DNA methylation is a key modulator of gene expression in mammalian development and cellular differentiation, including neurons. To date, the role of DNA modifications in long-term potentiation (LTP) has not be...

    Authors: Jesper L. V. Maag, Dominik C. Kaczorowski, Debabrata Panja, Timothy J. Peters, Clive R. Bramham, Karin Wibrand and Marcel E. Dinger
    Citation: BMC Genomics 2017 18:250
    Content type: Research article Published on:

  26. Bulbs of the ornamental flower Lilium pumilum enter a period of dormancy after flowering in spring, and require exposure to cold for a period of time in order to release dormancy. Previous studies focused mainly ...

    Authors: Wang Wang, Xiaoxia Su, Zhongping Tian, Yu Liu, Yunwei Zhou and Miao He
    Citation: BMC Genomics 2018 19:196
    Content type: Research article Published on:

  27. Aspergillus fumigatus is a mold responsible for the majority of cases of aspergillosis in humans. To survive in the human body, A. fumigatus must adapt to microenvironments that are often characterized by low nut...

    Authors: Bridget M Barker, Kristin Kroll, Martin Vödisch, Aurélien Mazurie, Olaf Kniemeyer and Robert A Cramer
    Citation: BMC Genomics 2012 13:62
    Content type: Research article Published on:

  28. DNA cytosine methylation is an epigenetic modification that has been implicated in many biological processes. However, large-scale epigenomic studies have been applied to very few plant species, and variabilit...

    Authors: Kelly J Vining, Kyle R Pomraning, Larry J Wilhelm, Henry D Priest, Matteo Pellegrini, Todd C Mockler, Michael Freitag and Steven H Strauss
    Citation: BMC Genomics 2012 13:27
    Content type: Research article Published on:

  29. The Senegalese sole (Solea senegalensis) is a marine flatfish of increasing commercial interest. However, the reproduction of this species in captivity is not yet controlled mainly because of the poor knowledge o...

    Authors: Angèle Tingaud-Sequeira, François Chauvigné, Juanjo Lozano, María J Agulleiro, Esther Asensio and Joan Cerdà
    Citation: BMC Genomics 2009 10:434
    Content type: Research article Published on:

  30. Carotenoids are a class of terpenoid pigments that contribute to the color and nutritional value of many fruits. Their biosynthetic pathways have been well established in a number of plant species; however, ma...

    Authors: Lina Zhang, Qiuyun Zhang, Wenhui Li, Shikui Zhang and Wanpeng Xi
    Citation: BMC Genomics 2019 20:876
    Content type: Research article Published on:

  31. The extremely harsh environment of the desert is changing dramatically every moment, and the rapid adaptive stress response in the short term requires enormous energy expenditure to mobilize widespread regulat...

    Authors: Jipeng Cui, Tianhang Qiu, Li Li and Suxia Cui
    Citation: BMC Genomics 2023 24:180
    Content type: Research Published on:

  32. Fasting induces specific molecular and metabolic adaptions in most organisms. In biomedical research fasting is used in metabolic studies to synchronize nutritional states of study subjects. Because there is a...

    Authors: Michael Schupp, Fang Chen, Erika R Briggs, Shilpa Rao, Helmut J Pelzmann, Ariane R Pessentheiner, Juliane G Bogner-Strauss, Mitchell A Lazar, Don Baldwin and Andreas Prokesch
    Citation: BMC Genomics 2013 14:758
    Content type: Research article Published on:

  33. The specialisation of mammalian cells in time and space requires genes associated with specific pathways and functions to be co-ordinately expressed. Here we have combined a large number of publically availabl...

    Authors: Neil A Mabbott, J Kenneth Baillie, Helen Brown, Tom C Freeman and David A Hume
    Citation: BMC Genomics 2013 14:632
    Content type: Research article Published on:

  34. The coevolutionary dynamics of corresponding male and female sexual traits, including genitalia, may be driven by complex genetic mechanisms. Carabus (Ohomopterus) ground beetles show correlated evolution in the ...

    Authors: Shota Nomura and Teiji Sota
    Citation: BMC Genomics 2022 23:637
    Content type: Research Published on:

  35. MANF and CDNF are evolutionarily conserved neurotrophic factors that specifically support dopaminergic neurons. To date, the receptors and signalling pathways of this novel MANF/CDNF family have remained unkno...

    Authors: Mari Palgi, Dario Greco, Riitta Lindström, Petri Auvinen and Tapio I Heino
    Citation: BMC Genomics 2012 13:134
    Content type: Research article Published on:

  36. Teleosts are characterized by a remarkable breadth of sexual mechanisms including various forms of hermaphroditism. Sparidae is a fish family exhibiting gonochorism or hermaphroditism even in closely related s...

    Authors: Tereza Manousaki, Alexandros Tsakogiannis, Jacques Lagnel, Elena Sarropoulou, Jenny Z Xiang, Nikos Papandroulakis, Constantinos C Mylonas and Costas S Tsigenopoulos
    Citation: BMC Genomics 2014 15:655
    Content type: Research article Published on:

  37. The use of RNAseq to resolve the transcriptional organization of an organism was established in recent years and also showed the complexity and dynamics of bacterial transcriptomes. The aim of this study was t...

    Authors: Katharina Pfeifer-Sancar, Almut Mentz, Christian Rückert and Jörn Kalinowski
    Citation: BMC Genomics 2013 14:888
    Content type: Research article Published on:

  38. The GeneChip®Medicago Genome Array, developed for Medicago truncatula, is a suitable platform for transcript profiling in tetraploid alfalfa [Medicago sativa (L.) subsp. sativa]. However, previous research involv...

    Authors: S Samuel Yang, Wayne Wenzhong Xu, Mesfin Tesfaye, JoAnn FS Lamb, Hans-Joachim G Jung, Kathryn A VandenBosch, Carroll P Vance and John W Gronwald
    Citation: BMC Genomics 2010 11:323
    Content type: Research article Published on:

  39. Large mammals are capable of thermoregulation shortly after birth due to the presence of brown adipose tissue (BAT). The majority of BAT disappears after birth and is replaced by white adipose tissue (WAT).

    Authors: Astrid L Basse, Karen Dixen, Rachita Yadav, Malin P Tygesen, Klaus Qvortrup, Karsten Kristiansen, Bjørn Quistorff, Ramneek Gupta, Jun Wang and Jacob B Hansen
    Citation: BMC Genomics 2015 16:215
    Content type: Research article Published on:

  40. Covalent modifications of core histones govern downstream DNA-templated processes such as transcription by altering chromatin structure and function. Previously, we reported that the plant homeodomain protein ...

    Authors: Isabel Cristina Vélez-Bermúdez and Wolfgang Schmidt
    Citation: BMC Genomics 2021 22:845
    Content type: Research Published on:

  41. Gonad development and differentiation is an essential function for all sexually reproducing species, and many aspects of these developmental processes are highly conserved among the metazoa. However, the mecha...

    Authors: Jun Li, Yinyin Zhou, Zihua Zhou, Chuanxu Lin, Jinkuan Wei, Yanpin Qin, Zhiming Xiang, Haitao Ma, Yang Zhang, Yuehuan Zhang and Ziniu Yu
    Citation: BMC Genomics 2020 21:872
    Content type: Research article Published on:

  42. Alternative splicing (AS) may generate multiple mRNA splicing isoforms from a single mRNA precursor using different splicing sites, leading to enhanced diversity of transcripts and proteins. AS has been implic...

    Authors: Yeyun Li, Xiaozeng Mi, Shiqi Zhao, Junyan Zhu, Rui Guo, Xiaobo Xia, Lu Liu, Shengrui Liu and Chaoling Wei
    Citation: BMC Genomics 2020 21:65
    Content type: Research article Published on:

  43. Herpetospermum pedunculosum (Ser.) C. B. Clarke is a traditional Chinese herbal medicine that heavily relies on the lignans found in its dried ripe seeds (Herpetospermum caudigerum), which have antioxidant and h...

    Authors: Ziwei Zhu, Daihan Chen, Min Sun, Maotao Xiao, Peng Huang, Dongsheng Ren, Yixi Yang, Zhen Zhang, Qi Zhao and Rui Li
    Citation: BMC Genomics 2024 25:421
    Content type: Research Published on:

  44. The core regulation of the abscisic acid (ABA) signalling pathway comprises the multigenic families PYL, PP2C, and SnRK2. In this work, we conducted a genome-wide study of the components of these families in Cucu...

    Authors: Jessica Iglesias-Moya, Álvaro Benítez, María Segura, Sonsoles Alonso, Dolores Garrido, Cecilia Martínez and Manuel Jamilena
    Citation: BMC Genomics 2024 25:268
    Content type: Research Published on:

  45. Human myelogenous leukemia characterized by either the non random t(8; 21)(q22; q22) or t(16; 21)(q24; q22) chromosome translocations differ for both their biological and clinical features. Some of these featu...

    Authors: Stefano Rossetti, André T Hoogeveen, Ping Liang, Cornel Stanciu, Peter van der Spek and Nicoletta Sacchi
    Citation: BMC Genomics 2007 8:38
    Content type: Research article Published on:

  48. Yarrowia lipolytica is an oleaginous ascomycete yeast that stores lipids in response to limitation of nitrogen. While the enzymatic pathways responsible for neutral lipid accumulation ...

    Authors: Kyle R. Pomraning, Young-Mo Kim, Carrie D. Nicora, Rosalie K. Chu, Erin L. Bredeweg, Samuel O. Purvine, Dehong Hu, Thomas O. Metz and Scott E. Baker
    Citation: BMC Genomics 2016 17:138
    Content type: Research article Published on:

  49. Different from herbaceous plants, the woody plants undergo a long-period vegetative stage to achieve floral transition. They then turn into seasonal plants, flowering annually. In this study, a preliminary mod...

    Authors: You-Jun Huang, Li-Li Liu, Jian-Qin Huang, Zheng-Jia Wang, Fang-Fang Chen, Qi-Xiang Zhang, Bing-Song Zheng and Ming Chen
    Citation: BMC Genomics 2013 14:691
    Content type: Research article Published on:

  50. Panduratin A extracted from Boesenbergia rotunda is a flavonoid reported to possess a range of medicinal indications which include anti-dengue, anti-HIV, anti-cancer, antioxidant and anti-inflammatory properties....

    Authors: Noor Diyana Md-Mustafa, Norzulaani Khalid, Huan Gao, Zhiyu Peng, Mohd Firdaus Alimin, Noraini Bujang, Wong Sher Ming, Yusmin Mohd-Yusuf, Jennifer A Harikrishna and Rofina Yasmin Othman
    Citation: BMC Genomics 2014 15:984
    Content type: Research article Published on:

Featured videos

View featured videos from across the BMC-series journals

Submit manuscript

Annual Journal Metrics

  • 2022 Citation Impact
    4.4 - 2-year Impact Factor
    4.7 - 5-year Impact Factor
    1.189 - SNIP (Source Normalized Impact per Paper)
    1.107 - SJR (SCImago Journal Rank)

    2023 Speed
    23 days submission to first editorial decision for all manuscripts (Median)
    137 days submission to accept (Median)

    2023 Usage
    7,167,242 downloads
    4,454 Altmetric mentions

Follow

Sign up for article alerts and news from this journal

BMC Genomics

ISSN: 1471-2164

Contact us