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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 20 of 128

  1. Magnaporthaceae, a family of ascomycetes, includes three fungi of great economic importance that cause disease in cereal and turf grasses: Magnaporthe oryzae (rice blast), Gaeumannomyces graminis var. tritici (ta...

    Authors: Laura H. Okagaki, Joshua K. Sailsbery, Alexander W. Eyre and Ralph A. Dean
    Citation: BMC Genomics 2016 17:135
    Content type: Research article Published on:

  2. Euscaphis konishii Hayata, a member of the Staphyleaceae Family, is a plant that has been widely used in Traditional Chinese Medicine and it has been the source for several types of flavonoids. To identify candid...

    Authors: Wenxian Liang, Lin Ni, Rebeca Carballar-Lejarazú, Xiaoxing Zou, Weihong Sun, Lingjiao Wu, Xueyuan Yuan, Yanling Mao, Wei Huang and Shuangquan Zou
    Citation: BMC Genomics 2019 20:24
    Content type: Research article Published on:

  3. Transcriptional elongation is a generic function, but is also regulated to allow rapid transcription responses. Following relatively long initiation and promoter clearance, RNA polymerase II can pause and then...

    Authors: Haiwang Yang, Denis Basquin, Daniel Pauli and Brian Oliver
    Citation: BMC Genomics 2017 18:384
    Content type: Research article Published on:

  4. Dietary zinc supplementation may help to promote growth, boost the immune system, protect against diabetes, and aid recovery from diarrhoea. We exploited the zebrafish (Danio rerio) gill as a unique vertebrate io...

    Authors: Dongling Zheng, Peter Kille, Graham P Feeney, Phil Cunningham, Richard D Handy and Christer Hogstrand
    Citation: BMC Genomics 2010 11:553
    Content type: Research article Published on:

  5. Members of the makorin (mkrn) gene family encode RING/C3H zinc finger proteins with U3 ubiquitin ligase activity. Although these proteins have been described in a variety of eukaryotes such as plants, fungi, inve...

    Authors: Astrid Böhne, Amandine Darras, Helena D'Cotta, Jean-Francois Baroiller, Delphine Galiana-Arnoux and Jean-Nicolas Volff
    Citation: BMC Genomics 2010 11:721
    Content type: Research article Published on:

  6. Promoter motifs in Entamoeba histolytica were earlier analysed using microarray data with lower dynamic range of gene expression. Additionally, previous transcriptomic studies did not provide information on the n...

    Authors: Sarah Naiyer, Devinder Kaur, Jamaluddin Ahamad, Shashi Shekhar Singh, Yatendra Pratap Singh, Vivek Thakur, Alok Bhattacharya and Sudha Bhattacharya
    Citation: BMC Genomics 2019 20:206
    Content type: Research article Published on:

  7. The flowering biology of wheat plants favours self-pollination which causes obstacles in wheat hybrid breeding. Wheat flowers can be divided into two groups, the first one is characterized by flowering and pol...

    Authors: Magdalena Szeliga, Beata Bakera, Magdalena Święcicka, Mirosław Tyrka and Monika Rakoczy-Trojanowska
    Citation: BMC Genomics 2023 24:170
    Content type: Research article Published on:

  8. Warmer seawater as a result of climate change may impose environmental challenges for Atlantic salmon aquaculture in its southernmost geographic range. Seawater temperatures above optimal level for growth may ...

    Authors: Pål A Olsvik, Vibeke Vikeså, Kai K Lie and Ernst M Hevrøy
    Citation: BMC Genomics 2013 14:817
    Content type: Research article Published on:

  9. American eel (Anguilla rostrata) is one of the few species for which panmixia has been demonstrated at the scale of the entire species. As such, the development of long term local adaptation is impossible. Howeve...

    Authors: Caroline L Côté, Martin Castonguay, McWilliam Svetlana Kalujnaia, Gordon Cramb and Louis Bernatchez
    Citation: BMC Genomics 2014 15:403
    Content type: Research article Published on:

  10. The fetal and adult globin genes in the human β-globin cluster on chromosome 11 are sequentially expressed to achieve normal hemoglobin switching during human development. The pharmacological induction of feta...

    Authors: Biaoru Li, Lianghao Ding, Wei Li, Michael D Story and Betty S Pace
    Citation: BMC Genomics 2012 13:153
    Content type: Research article Published on:

  12. Up to now, microarray data are mostly assessed in context with only one or few parameters characterizing the experimental conditions under study. More explicit experiment annotations, however, are highly usefu...

    Authors: Kurt Fellenberg, Christian H Busold, Olaf Witt, Andrea Bauer, Boris Beckmann, Nicole C Hauser, Marcus Frohme, Stefan Winter, Jürgen Dippon and Jörg D Hoheisel
    Citation: BMC Genomics 2006 7:319
    Content type: Methodology article Published on:

  13. Crosstalk between the signalling pathways responding to light–dark cycles and those triggering the adaptation of metabolism to the environment is known to occur in various organisms. This interrelationship of ...

    Authors: Doris Tisch, Andre Schuster and Monika Schmoll
    Citation: BMC Genomics 2014 15:425
    Content type: Research article Published on:

  14. Housekeeping genes (HKG) are constitutively expressed in all tissues while tissue-enriched genes (TEG) are expressed at a much higher level in a single tissue type than in others. HKGs serve as valuable experi...

    Authors: Xinwei She, Carol A Rohl, John C Castle, Amit V Kulkarni, Jason M Johnson and Ronghua Chen
    Citation: BMC Genomics 2009 10:269
    Content type: Research article Published on:

  15. The tissue damage caused by transient ischemic injury is an essential component of the pathogenesis of retinal ischemia, which mainly hinges on the degree and duration of interruption of the blood supply and t...

    Authors: Kai-Xiong Qing, Amy C. Y. Lo, Siduo Lu, You Zhou, Dan Yang and Di Yang
    Citation: BMC Genomics 2024 25:367
    Content type: Research Published on:

  16. Dirofilaria immitis, or canine heartworm, is a filarial nematode parasite that infects dogs and other mammals worldwide. Current disease control relies on regular administration of anthelmintic preventives, howev...

    Authors: Ashley N Luck, Christopher C Evans, Molly D Riggs, Jeremy M Foster, Andrew R Moorhead, Barton E Slatko and Michelle L Michalski
    Citation: BMC Genomics 2014 15:1041
    Content type: Research article Published on:

  17. Shigella specie is a globally important intestinal pathogen disseminated all over the world. In this study we analyzed the genome and the proteomic component of two Shigella flexneri 2a clinical isolates, collect...

    Authors: Mónica F. Torrez Lamberti, Lucrecia C. Terán, Fabián E. Lopez, María de las Mercedes Pescaretti and Mónica A. Delgado
    Citation: BMC Genomics 2022 23:495
    Content type: Research Published on:

  18. Cotton Verticillium wilt is one of the most devastating diseases for cotton production in the world. Although this diseases have been widely studied at the molecular level from pathogens, the molecular basis of V...

    Authors: Xinyu Zhang, Wenhan Cheng, Zhidi Feng, Qianhao Zhu, Yuqiang Sun, Yanjun Li and Jie Sun
    Citation: BMC Genomics 2020 21:155
    Content type: Research article Published on:

  19. Chlamydomonas reinhardtii is the model organism that serves as a reference for studies in algal genomics and physiology. It is of special interest in the study of the evolution of regu...

    Authors: Francisco J. Romero-Campero, Ignacio Perez-Hurtado, Eva Lucas-Reina, Jose M. Romero and Federico Valverde
    Citation: BMC Genomics 2016 17:227
    Content type: Research article Published on:

  20. The transcription of developmental regulatory genes is often controlled by multiple cis-regulatory elements. The identification and functional characterization of distal regulatory elements remains challenging...

    Authors: César Arenas-Mena, Sofija Miljovska, Edward J. Rice, Justin Gurges, Tanvi Shashikant, Zihe Wang, Sevinç Ercan and Charles G. Danko
    Citation: BMC Genomics 2021 22:751
    Content type: Research Published on:

  21. Intrauterine growth restriction (IUGR) remains a major problem associated with swine production. Thus, understanding the physiological changes of postnatal IUGR piglets would aid in improving growth performanc...

    Authors: Hongmei Gao, Longchao Zhang, Ligang Wang, Xin Liu, Xinhua Hou, Fuping Zhao, Hua Yan and Lixian Wang
    Citation: BMC Genomics 2020 21:701
    Content type: Research article Published on:

  22. Mimosa bimucronata originates from tropical America and exhibits distinctive leaf movement characterized by a relative slow speed. Additionally, this species possesses the ability to fix nitrogen. Despite these i...

    Authors: Haifeng Jia, Jishan Lin, Zhicong Lin, Yibin Wang, Liangwei Xu, Wenjie Ding and Ray Ming
    Citation: BMC Genomics 2024 25:334
    Content type: Research Published on:

  23. The development of the brain requires precise coordination of molecular processes across many cell-types. Underpinning these events are gene expression programs which require intricate regulation by non-coding...

    Authors: Miguel Ramirez, Remi Robert, Joanna Yeung, Joshua Wu, Ayasha Abdalla-Wyse and Daniel Goldowitz
    Citation: BMC Genomics 2023 24:351
    Content type: Research Published on:

  24. Age- and sex-related susceptibility to adverse drug reactions and disease is a key concern in understanding drug safety and disease progression. We hypothesize that the underlying suite of hepatic genes expres...

    Authors: Joshua C Kwekel, Varsha G Desai, Carrie L Moland, William S Branham and James C Fuscoe
    Citation: BMC Genomics 2010 11:675
    Content type: Research article Published on:

  25. White mold, caused by Sclerotinia sclerotiorum, is one of the most important diseases of pea (Pisum sativum L.), however, little is known about the genetics and biochemistry of this interaction. Identification of...

    Authors: Xiaofeng Zhuang, Kevin E McPhee, Tristan E Coram, Tobin L Peever and Martin I Chilvers
    Citation: BMC Genomics 2012 13:668
    Content type: Research article Published on:

  26. Arsenic and cadmium are widely distributed in nature and pose serious threats to the environment and human health. Exposure to these nonessential toxic metals may result in a variety of human diseases includin...

    Authors: Michael Thorsen, Gabriel G Perrone, Erik Kristiansson, Mathew Traini, Tian Ye, Ian W Dawes, Olle Nerman and Markus J Tamás
    Citation: BMC Genomics 2009 10:105
    Content type: Research article Published on:

  27. To strengthen research and differential diagnostics of mitochondrial disorders, we constructed and validated an oligonucleotide microarray (h-MitoArray) allowing expression analysis of 1632 human genes involve...

    Authors: Alena Čížková, Viktor Stránecký, Robert Ivánek, Hana Hartmannová, Lenka Nosková, Lenka Piherová, Markéta TesaÅ™ová, Hana Hansíková, Tomáš Honzík, Jiří Zeman, Petr Divina, Andrea Potocká, Jan Paul, Wolfgang Sperl, Johannes A Mayr, Sara Seneca…
    Citation: BMC Genomics 2008 9:38
    Content type: Research article Published on:

  28. Differences in gene expression may be caused by nearby DNA polymorphisms (cis regulation) or by interactions of gene control regions with polymorphic transcription factors (trans regulation). Trans acting loci ar...

    Authors: Harry A Noyes, Morris Agaba, Susan Anderson, Alan L Archibald, Andy Brass, John Gibson, Laurence Hall, Helen Hulme, Sung Jong Oh and Stephen Kemp
    Citation: BMC Genomics 2010 11:361
    Content type: Research article Published on:

  29. Cotton fibers provide a powerful model for studying cell differentiation and elongation. Each cotton fiber is a singular and elongated cell derived from epidermal-layer cells of a cotton seed. Efforts to under...

    Authors: Atsumi Ando, Ryan C. Kirkbride, Don C. Jones, Jane Grimwood and Z. Jeffrey Chen
    Citation: BMC Genomics 2021 22:309
    Content type: Research article Published on:

  30. Bioinformatic analyses of expression control sequences in promoters of co-expressed or functionally related genes enable the discovery of common regulatory sequence motifs that might be involved in co-ordinate...

    Authors: Stefan Roepcke, Silke Stahlberg, Holger Klein, Marcel H Schulz, Lars Theobald, Sabrina Gohlke, Martin Vingron and Diego J Walther
    Citation: BMC Genomics 2011 12:624
    Content type: Research article Published on:

  33. Structural mutations (SMs) play a major role in cancer development. In some cancers, such as breast and ovarian, DNA double-strand breaks (DSBs) occur more frequently in transcribed regions, while in other can...

    Authors: Krzysztof R Grzeda, Beryl Royer-Bertrand, Koichiro Inaki, Hyunsoo Kim, Axel M Hillmer, Edison T Liu and Jeffrey H Chuang
    Citation: BMC Genomics 2014 15:1013
    Content type: Research article Published on:

  34. Pecan scab is a devastating disease that causes damage to pecan (Carya illinoinensis (Wangenh.) K. Koch) fruit and leaves. The disease is caused by the fungus Venturia effusa (G. Winter) and the main management p...

    Authors: Jordan Brungardt, Yanina Alarcon, Jason Shiller, Carolyn Young, Maria J. Monteros, Jennifer J. Randall and Clive H. Bock
    Citation: BMC Genomics 2024 25:180
    Content type: Research Published on:

  35. Factor analysis (FA) has been widely applied in microarray studies as a data-reduction-tool without any a-priori assumption regarding associations between observed data and latent structure (Exploratory Factor...

    Authors: Anne PG Crijns, Frans Gerbens, A Edo D Plantinga, Gert Jan Meersma, Steven de Jong, Robert MW Hofstra, Elisabeth GE de Vries, Ate GJ van der Zee, Geertruida H de Bock and Gerard J te Meerman
    Citation: BMC Genomics 2006 7:232
    Content type: Methodology article Published on:

  36. The adult skeletal muscle is a plastic tissue with a remarkable ability to adapt to different levels of activity by altering its excitability, its contractile and metabolic phenotype and its mass. We previousl...

    Authors: Arjan P Palstra, Mireia Rovira, David Rizo-Roca, Joan Ramon Torrella, Herman P Spaink and Josep V Planas
    Citation: BMC Genomics 2014 15:1136
    Content type: Research article Published on:

  37. Ornamental cabbage (Brassica oleracea var. acephala) is an attractive landscape plant that remains colorful at low temperatures during winter. Its key feature is its inner leaf coloration, which can include red, ...

    Authors: Si-Won Jin, Md Abdur Rahim, Khandker Shazia Afrin, Jong-In Park, Jong-Goo Kang and Ill-Sup Nou
    Citation: BMC Genomics 2018 19:797
    Content type: Research article Published on:

  38. Sclerotinia sclerotiorum, the cause of Sclerotinia stem rot (SSR), is a host generalist necrotrophic fungus that can cause major yield losses in chickpea (Cicer arietinum) production. This study used RNA sequenci...

    Authors: Virginia W. Mwape, Fredrick M. Mobegi, Roshan Regmi, Toby E. Newman, Lars G. Kamphuis and Mark C. Derbyshire
    Citation: BMC Genomics 2021 22:333
    Content type: Research Published on:

  39. Trypanosoma brucei is a unicellular parasite which multiplies in mammals (bloodstream form) and Tsetse flies (procyclic form). Trypanosome RNA polymerase II transcription is polycistro...

    Authors: Enoch B. Antwi, Jurgen R. Haanstra, Gowthaman Ramasamy, Bryan Jensen, Dorothea Droll, Federico Rojas, Igor Minia, Monica Terrao, Clémentine Mercé, Keith Matthews, Peter J. Myler, Marilyn Parsons and Christine Clayton
    Citation: BMC Genomics 2016 17:306
    Content type: Research article Published on:

  40. The version of this article published in BMC Genomics 2009, 10: 558, contains data in Table 1 which are now known to be unreliable, and an illustration, in Figure 1, of unusual miRNA processing events predicted b...

    Authors: Erica Mica, Viviana Piccolo, Massimo Delledonne, Alberto Ferrarini, Mario Pezzotti, Cesare Casati, Cristian Del Fabbro, Giorgio Valle, Alberto Policriti, Michele Morgante, Graziano Pesole, M Enrico Pè and David S Horner
    Citation: BMC Genomics 2010 11:109
    Content type: Erratum Published on:

    The original article was published in BMC Genomics 2009 10:558

  41. Pax3 is a key upstream regulator of the onset of myogenesis, controlling progenitor cell survival and behaviour as well as entry into the myogenic programme. It functions in the dermomyotome of the somite from...

    Authors: Mounia Lagha, Takahiko Sato, Béatrice Regnault, Ana Cumano, Aimée Zuniga, Jonathan Licht, Frédéric Relaix and Margaret Buckingham
    Citation: BMC Genomics 2010 11:696
    Content type: Research article Published on:

  44. Black spot disease caused by the necrotrophic fungus Alternaria spp. is one of the most devastating diseases affecting Chrysanthemum morifolium. There is currently no effective way to prevent chrysanthemum black ...

    Authors: Shuhuan Zhang, Weihao Miao, Ye Liu, Jiafu Jiang, Sumei Chen, Fadi Chen and Zhiyong Guan
    Citation: BMC Genomics 2023 24:553
    Content type: Research Published on:

  45. One of the most crucial tasks for a cell to ensure its long term survival is preserving the integrity of its genetic heritage via maintenance of DNA structure and sequence. While the DNA damage response in the...

    Authors: Michael G Benton, Swetha Somasundaram, Jeremy D Glasner and Sean P Palecek
    Citation: BMC Genomics 2006 7:305
    Content type: Research article Published on:

  46. In livestock populations the genetic contribution to muscling is intensively monitored in the progeny of industry sires and used as a tool in selective breeding programs. The genes and pathways conferring this...

    Authors: Lisette JA Kogelman, Keren Byrne, Tony Vuocolo, Nathan S Watson-Haigh, Haja N Kadarmideen, James W Kijas, Hutton V Oddy, Graham E Gardner, Cedric Gondro and Ross L Tellam
    Citation: BMC Genomics 2011 12:607
    Content type: Research article Published on:

  47. RNA interference (RNAi) is commonly applied in genome-scale gene functional screens. However, a one-on-one RNAi analysis that targets each gene is cost-ineffective and laborious. Previous studies have indicate...

    Authors: Chih-Hung Chang, Hsiang-Iu Wang, Hsiang-Chia Lu, Cheng-En Chen, Hong-Hwa Chen, Hsin-Hung Yeh and Chuan Yi Tang
    Citation: BMC Genomics 2012 13:491
    Content type: Methodology article Published on:

  48. Photoperiod-sensitive genic male sterile (PGMS) rice, Nongken 58S, was discovered in 1973. It has been widely used for the production of hybrid rice, and great achievements have been made in improving rice yie...

    Authors: Wei Wang, Zhenwei Liu, Zhibin Guo, Gaoyuan Song, Qin Cheng, Daiming Jiang, Yingguo Zhu and Daichang Yang
    Citation: BMC Genomics 2011 12:462
    Content type: Research article Published on:

  49. Fertility in dairy cows depends on ovarian cyclicity and on uterine involution. Ovarian cyclicity and uterine involution are delayed when there is uterine dysbiosis (overgrowth of pathogenic bacteria). Fertili...

    Authors: Stephen G. Moore, Aaron C. Ericsson, Susanta K. Behura, William R. Lamberson, Timothy J. Evans, Matthew S. McCabe, Scott E. Poock and Matthew C. Lucy
    Citation: BMC Genomics 2019 20:405
    Content type: Research article Published on:

  50. CD-1 is an outbred mouse stock that is frequently used in toxicology, pharmacology, and fundamental biomedical research. Although inbred strains are typically better suited for such studies due to minimal gene...

    Authors: Yoon Hee Jung, Hsiao-Lin V. Wang, Samir Ali, Victor G. Corces and Isaac Kremsky
    Citation: BMC Genomics 2023 24:437
    Content type: Research Published on:

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