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6355 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 21 of 128

  1. Tetrodotoxin (TTX) is a deadly neurotoxin and usually accumulates in large amounts in the ovaries but is non-toxic or low toxic in the testis of pufferfish. The molecular mechanism underlying sexual dimorphism...

    Authors: Xue He, Hexing Wu, Yaping Ye, Xiaolin Gong and Baolong Bao
    Citation: BMC Genomics 2022 23:553
    Content type: Research Published on:

  2. The intracerebroventricular injection of visfatin increases feed intake. However, little is known about the molecular mechanism in chicks. This study was conducted to assess the effect of visfatin on the feedi...

    Authors: Zhuanjian Li, Xuelian Liu, Panpan Zhang, Ruili Han, Guirong Sun, Ruirui Jiang, Yanbin Wang, Xiaojun Liu, Wenya Li, Xiangtao Kang and Yadong Tian
    Citation: BMC Genomics 2018 19:249
    Content type: Research article Published on:

  3. Boehmeria nivea L. Gaud (Ramie) produces one of the longest natural fibers in nature. The bark of ramie mainly comprises of the phloem tissue of stem and is the raw material for fiber. Therefore, identifying the ...

    Authors: Jiyong Xie, Jiaqi Li, Yucheng Jie, Deyu Xie, Di Yang, Huazhong Shi and Yingli Zhong
    Citation: BMC Genomics 2020 21:40
    Content type: Research article Published on:

  4. Chrysanthemum (Chrysanthemum morifolium) black spot disease caused by Alternaria alternata is one of the plant’s most destructive diseases. Dual RNA-seq was performed to simultaneously assess their transcriptomes...

    Authors: Lina Liu, Fadi Chen, Sumei Chen, Weimin Fang, Ye Liu and Zhiyong Guan
    Citation: BMC Genomics 2021 22:523
    Content type: Research article Published on:

  5. The American lobster, Homarus americanus, is an important species as an economically valuable fishery, a key member in marine ecosystems, and a well-studied model for central pattern generation, the neural networ...

    Authors: Lara Lewis McGrath, Steven V. Vollmer, Stefan T. Kaluziak and Joseph Ayers
    Citation: BMC Genomics 2016 17:63
    Content type: Research article Published on:

  6. The female reproductive tract is exposed directly to the male’s ejaculate, making it a hotspot for mating-induced responses. In Drosophila melanogaster, changes in the reproductive tract are essential to optimize...

    Authors: Sofie Y. N. Delbare, Asha M. Jain, Andrew G. Clark and Mariana F. Wolfner
    Citation: BMC Genomics 2023 24:356
    Content type: Research Published on:

  7. Stress responses provide valuable models for deciphering the transcriptional networks controlling the adaptation of the cell to its environment. We analyzed the transcriptome response of yeast to toxic concent...

    Authors: Hélène Salin, Vivienne Fardeau, Eugenia Piccini, Gaelle Lelandais, Véronique Tanty, Sophie Lemoine, Claude Jacq and Frédéric Devaux
    Citation: BMC Genomics 2008 9:333
    Content type: Research article Published on:

  8. The yeast Saccharomyces cerevisiae is able to adapt and in situ detoxify lignocellulose derived inhibitors such as furfural and HMF. The length of lag phase for cell growth in response to the inhibitor challenge ...

    Authors: Menggen Ma and Z Lewis Liu
    Citation: BMC Genomics 2010 11:660
    Content type: Research article Published on:

  9. Intrinsically disordered proteins lack stable structure under physiological conditions, yet carry out many crucial biological functions, especially functions associated with regulation, recognition, signaling ...

    Authors: Uros Midic, Christopher J Oldfield, A Keith Dunker, Zoran Obradovic and Vladimir N Uversky
    Citation: BMC Genomics 2009 10(Suppl 1):S12
    Content type: Research Published on:

    This article is part of a Supplement: Volume 10 Supplement 1

  11. Soybean is one of most important oilseed crop worldwide, however, its production is often limited by many insect pests. Bean pyralid is one of the major soybean leaf-feeding insects in China. To explore the de...

    Authors: Weiying Zeng, Zudong Sun, Zhaoyan Cai, Huaizhu Chen, Zhenguang Lai, Shouzhen Yang and Xiangmin Tang
    Citation: BMC Genomics 2017 18:871
    Content type: Research article Published on:

  12. Gamma-proteobacteria, such as Escherichia coli, can use a variety of respiratory substrates employing numerous aerobic and anaerobic respiratory systems controlled by multiple transcription regulators. Thus, in E...

    Authors: Dmitry A Ravcheev, Anna V Gerasimova, Andrey A Mironov and Mikhail S Gelfand
    Citation: BMC Genomics 2007 8:54
    Content type: Research article Published on:

  13. The fungus Cronartium ribicola (Cri) is an economically and ecologically important forest pathogen that causes white pine blister rust (WPBR) disease on five-needle pines. To cause stem cankers and kill white pin...

    Authors: Jun-Jun Liu, Rona N. Sturrock, Richard A. Sniezko, Holly Williams, Ross Benton and Arezoo Zamany
    Citation: BMC Genomics 2015 16:678
    Content type: Research article Published on:

  14. The morphogenesis of single-celled cotton fiber includes extreme elongation and staged cell wall differentiation. Designing strategies for improving cotton fiber for textiles and other uses relies on uncoverin...

    Authors: John R. Tuttle, Gyoungju Nah, Mary V. Duke, Danny C. Alexander, Xueying Guan, Qingxin Song, Z. Jeffrey Chen, Brian E. Scheffler and Candace H. Haigler
    Citation: BMC Genomics 2015 16:477
    Content type: Research article Published on:

  15. Lasiodiplodia theobromae is a fungus of the Botryosphaeriaceae that causes grapevine vascular disease, especially in regions with hot climates. Fungi in this group often remain latent ...

    Authors: Marcos Paolinelli-Alfonso, José Manuel Villalobos-Escobedo, Philippe Rolshausen, Alfredo Herrera-Estrella, Clara Galindo-Sánchez, José Fabricio López-Hernández and Rufina Hernandez-Martinez
    Citation: BMC Genomics 2016 17:615
    Content type: Research article Published on:

  16. Iron deficiency (ID) during the fetal-neonatal period results in long-term neurodevelopmental impairments associated with pervasive hippocampal gene dysregulation. Prenatal choline supplementation partially no...

    Authors: Shirelle X. Liu, Aarthi Ramakrishnan, Li Shen, Jonathan C. Gewirtz, Michael K. Georgieff and Phu V. Tran
    Citation: BMC Genomics 2024 25:301
    Content type: Research Published on:

  17. Genome-wide analysis was performed to assess the transcriptional landscape of germinating A. niger conidia using both next generation RNA-sequencing and GeneChips. The metabolism of storage compounds during conid...

    Authors: Michaela Novodvorska, Kimran Hayer, Steven T Pullan, Raymond Wilson, Martin J Blythe, Hein Stam, Malcolm Stratford and David B Archer
    Citation: BMC Genomics 2013 14:246
    Content type: Research article Published on:

  18. Studies on bacterial signal transduction systems have revealed complex networks of functional interactions, where the response regulators play a pivotal role. The AtoSC system of E. coli activates the expression ...

    Authors: Eleftherios Pilalis, Aristotelis A Chatziioannou, Asterios I Grigoroudis, Christos A Panagiotidis, Fragiskos N Kolisis and Dimitrios A Kyriakidis
    Citation: BMC Genomics 2011 12:238
    Content type: Research article Published on:

  19. Gene reshuffling, point mutations and horizontal gene transfer contribute to bacterial genome variation, but require the genome to rewire its transcriptional circuitry to ensure that inserted, mutated or reshu...

    Authors: Ida Porcelli, Mark Reuter, Bruce M Pearson, Thomas Wilhelm and Arnoud HM van Vliet
    Citation: BMC Genomics 2013 14:616
    Content type: Research article Published on:

  20. It has become evident that host cells react to recombinant protein production with a variety of metabolic and intrinsic stresses such as the unfolded protein response (UPR) pathway. Additionally, environmental...

    Authors: Brigitte Gasser, Michael Maurer, Jari Rautio, Michael Sauer, Anamitra Bhattacharyya, Markku Saloheimo, Merja Penttilä and Diethard Mattanovich
    Citation: BMC Genomics 2007 8:179
    Content type: Research article Published on:

  21. Double strand (ds) DNA breaks are a form of DNA damage that can be generated from both genotoxic exposures and physiologic processes, can disrupt cellular functions and can be lethal if not repaired properly. ...

    Authors: Cynthia L Innes, Jill E Hesse, Stela S Palii, Beth A Helmink, Abigail J Holub, Barry P Sleckman and Richard S Paules
    Citation: BMC Genomics 2013 14:163
    Content type: Research article Published on:

  22. Spermatogenesis is a late developmental process that involves a coordinated expression program in germ cells and a permanent communication between the testicular somatic cells and the germ-line. Current knowle...

    Authors: Antoine D Rolland, Jean-Jacques Lareyre, Anne-Sophie Goupil, Jérôme Montfort, Marie-Jo Ricordel, Diane Esquerré, Karine Hugot, Rémi Houlgatte, Fréderic Chalmel and Florence Le Gac
    Citation: BMC Genomics 2009 10:546
    Content type: Research article Published on:

  23. A proper balance between different T helper (Th) cell subsets is necessary for normal functioning of the adaptive immune system. Revealing key genes and pathways driving the differentiation to distinct Th cell...

    Authors: Tarmo Äijö, Sanna M Edelman, Tapio Lönnberg, Antti Larjo, Henna Kallionpää, Soile Tuomela, Emilia Engström, Riitta Lahesmaa and Harri Lähdesmäki
    Citation: BMC Genomics 2012 13:572
    Content type: Research article Published on:

  24. Cis-regulatory elements (CRE) are critical for coordinating gene expression programs that dictate cell-specific differentiation and homeostasis. Recently developed self-transcribing active regulatory region se...

    Authors: Kurtis Stefan and Artem Barski
    Citation: BMC Genomics 2023 24:253
    Content type: Research Published on:

  25. The AP2/ERF protein family contains transcription factors that play a crucial role in plant growth and development and in response to biotic and abiotic stress conditions in plants. Grapevine (Vitis vinifera) is ...

    Authors: Francesco Licausi, Federico M Giorgi, Sara Zenoni, Fabio Osti, Mario Pezzotti and Pierdomenico Perata
    Citation: BMC Genomics 2010 11:719
    Content type: Research article Published on:

  26. Tuberculosis is a life-threatening infectious disease caused by Mycobacterium tuberculosis (M.tb). M.tb subverts host immune responses to build a favourable niche and survive inside of host macrophages. Macrophag...

    Authors: Elena Denisenko, Reto Guler, Musa Mhlanga, Harukazu Suzuki, Frank Brombacher and Sebastian Schmeier
    Citation: BMC Genomics 2019 20:71
    Content type: Research article Published on:

  27. SYT-SSX is the oncogene associated with synovial sarcoma (SS), a stem cell disease. SYT-SSX is thought to be responsible for sarcoma initiation and development. It interacts with components of Polycomb and SWI...

    Authors: Christina B Garcia, Christian M Shaffer and Josiane E Eid
    Citation: BMC Genomics 2012 13:189
    Content type: Research article Published on:

  28. Prenatal stress (PS) is considered as a risk factor for many mental disorders. PS-induced transcriptomic alterations may contribute to the functional dysregulation during brain development. Here, we used RNA-s...

    Authors: Yuhao Dong, Jie Weng, Yueyan Zhu, Daijing Sun, Wei He, Qi Chen, Jin Cheng, Ying Zhu and Yan Jiang
    Citation: BMC Genomics 2023 24:86
    Content type: Research Published on:

  29. Developmental transcriptional regulatory networks are circuits of transcription factors (TFs) and cis-acting DNA elements (Cis Regulatory Modules, CRMs) that dynamically control expression of downstream genes....

    Authors: Delphine Potier, Denis Seyres, Céline Guichard, Magali Iche-Torres, Stein Aerts, Carl Herrmann and Laurent Perrin
    Citation: BMC Genomics 2014 15:534
    Content type: Research article Published on:

  30. The adipose tissue is an endocrine regulator and a risk factor for atherosclerosis and cardiovascular disease when by excessive accumulation induces obesity. Although the adipose tissue is also a reservoir for...

    Authors: Blanca Oñate, Gemma Vilahur, Sandra Camino-López, Alberto Díez-Caballero, Carlos Ballesta-López, Juan Ybarra, Fabrizio Moscatiello, Javier Herrero and Lina Badimon
    Citation: BMC Genomics 2013 14:625
    Content type: Research article Published on:

  32. The classical view on eukaryotic gene expression proposes the scheme of a forward flow for which fluctuations in mRNA levels upon a stimulus contribute to determine variations in mRNA availability for translat...

    Authors: Toma Tebaldi, Angela Re, Gabriella Viero, Ilaria Pegoretti, Andrea Passerini, Enrico Blanzieri and Alessandro Quattrone
    Citation: BMC Genomics 2012 13:220
    Content type: Research article Published on:

  34. A single bout of exercise induces changes in gene expression in skeletal muscle. Regular exercise results in an adaptive response involving changes in muscle architecture and biochemistry, and is an effective ...

    Authors: Kenneth Bryan, Beatrice A. McGivney, Gabriella Farries, Paul A. McGettigan, Charlotte L. McGivney, Katie F. Gough, David E. MacHugh, Lisa M. Katz and Emmeline W. Hill
    Citation: BMC Genomics 2017 18:595
    Content type: Research article Published on:

  35. Bean common mosaic virus (BCMV) is widespread, with Phaseolus species as the primary host plants. Numerous BCMV strains have been identified on the basis of a panel of bean varieties t...

    Authors: Kathleen Martin, Jugpreet Singh, John H. Hill, Steven A. Whitham and Steven B. Cannon
    Citation: BMC Genomics 2016 17:613
    Content type: Research article Published on:

  36. Microarrays are a powerful tool for transcriptome analysis. Best results are obtained using high-quality RNA samples for preparation and hybridization. Issues with RNA integrity can lead to low data quality an...

    Authors: Mario Fasold and Hans Binder
    Citation: BMC Genomics 2012 13:186
    Content type: Research article Published on:

  37. The transforming growth factor beta-1 (TGF β-1) cytokine exerts both pro-tumor and anti-tumor effects in carcinogenesis. An increasing body of literature suggests that TGF β-1 signaling outcome is partially depen...

    Authors: Jeremy W.K. Ng, Esther H.Q. Ong, Lisa Tucker-Kellogg and Greg Tucker-Kellogg
    Citation: BMC Genomics 2022 23(Suppl 1):525
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 1

  38. Changes in DNA methylation in the mammalian genome during development are frequent events and play major roles regulating gene expression and other developmental processes. It is necessary to identify these ev...

    Authors: Ping Liang, Fei Song, Srimoyee Ghosh, Evan Morien, Maochun Qin, Saleh Mahmood, Kyoko Fujiwara, Jun Igarashi, Hiroki Nagase and William A Held
    Citation: BMC Genomics 2011 12:231
    Content type: Research article Published on:

  39. Exiguobacterium antarcticum strain B7 is a Gram-positive psychrotrophic bacterial species isolated in Antarctica. Although this bacteria has been poorly studied, its genome has already been sequenced. Therefore, ...

    Authors: Hivana PMB Dall’Agnol, Rafael A Baraúna, Pablo HCG de Sá, Rommel TJ Ramos, Felipe Nóbrega, Catarina IP Nunes, Diego A das Graças, Adriana R Carneiro, Daniel M Santos, Adriano MC Pimenta, Marta SP Carepo, Vasco Azevedo, Vivian H Pellizari, Maria PC Schneider and Artur Silva
    Citation: BMC Genomics 2014 15:986
    Content type: Research article Published on:

  40. Dickeya solani is an important plant pathogenic bacterium causing severe losses in European potato production. This species draws a lot of attention due to its remarkable virulence, great devastating potential an...

    Authors: Agata Motyka-Pomagruk, Sabina Zoledowska, Agnieszka Emilia Misztak, Wojciech Sledz, Alessio Mengoni and Ewa Lojkowska
    Citation: BMC Genomics 2020 21:449
    Content type: Research article Published on:

  42. Amyotrophic lateral sclerosis (ALS) is a fatal disorder caused by the progressive degeneration of motoneurons in brain and spinal cord. Despite identification of disease-linked mutations, the diversity of proc...

    Authors: Carsten W Lederer, Antonietta Torrisi, Maria Pantelidou, Niovi Santama and Sebastiano Cavallaro
    Citation: BMC Genomics 2007 8:26
    Content type: Research article Published on:

  43. Down syndrome (DS; trisomy 21) is the most common genetic cause of mental retardation in the human population and key molecular networks dysregulated in DS are still unknown. Many different experimental techni...

    Authors: Mireia Vilardell, Axel Rasche, Anja Thormann, Elisabeth Maschke-Dutz, Luis A Pérez-Jurado, Hans Lehrach and Ralf Herwig
    Citation: BMC Genomics 2011 12:229
    Content type: Research article Published on:

  44. Salt significantly depresses the growth and development of the greater duckweed, Spirodela polyrhiza, a model species of floating aquatic plants. Physiological responses of this plant to salt stress have been cha...

    Authors: Lili Fu, Zehong Ding, Deguan Tan, Bingying Han, Xuepiao Sun and Jiaming Zhang
    Citation: BMC Genomics 2020 21:212
    Content type: Research article Published on:

  45. The maize INDETERMINATE1 gene, ID1, is a key regulator of the transition to flowering and the founding member of a transcription factor gene family that encodes a protein with a distinct arrangement of zinc finge...

    Authors: Joseph Colasanti, Reynald Tremblay, Ada YM Wong, Viktoriya Coneva, Akiko Kozaki and Barbara K Mable
    Citation: BMC Genomics 2006 7:158
    Content type: Research article Published on:

  47. A number of publications have recently examined the occurrence and properties of the feed-forward motif in a variety of networks, including those that are of interest in genome biology, such as gene networks. ...

    Authors: Piers J Ingram, Michael PH Stumpf and Jaroslav Stark
    Citation: BMC Genomics 2006 7:108
    Content type: Research article Published on:

  48. Rice is highly sensitive to drought, and the effect of drought may vary with the different genotypes and development stages. Genome-wide gene expression profiling was used as the initial point to dissect molec...

    Authors: Di Wang, Yajiao Pan, Xiuqin Zhao, Linghua Zhu, Binying Fu and Zhikang Li
    Citation: BMC Genomics 2011 12:149
    Content type: Research article Published on:

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