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6357 result(s) for 'general transcription factors vs specific' within BMC Genomics

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  1. Caixin and Zicaitai (Brassica rapa) belong to Southern and Central China respectively. Zicaitai contains high amount of anthocyanin in leaf and stalk resulting to the purple color. Stalk is the major edible part ...

    Authors: Gui-Hua Li, Han-Cai Chen, Jia-Li Liu, Wen-Long Luo, Da-Sen Xie, Shao-Bo Luo, Ting-Quan Wu, Waheed Akram and Yu-Juan Zhong
    Citation: BMC Genomics 2019 20:343
    Content type: Research article Published on:

  2. To develop a set of transcriptome sequences to support research on environmental stress responses in green ash (Fraxinus pennsylvanica), we undertook deep RNA sequencing of green ash tissues under various stress ...

    Authors: Thomas Lane, Teodora Best, Nicole Zembower, Jack Davitt, Nathan Henry, Yi Xu, Jennifer Koch, Haiying Liang, John McGraw, Stephan Schuster, Donghwan Shim, Mark V. Coggeshall, John E. Carlson and Margaret E. Staton
    Citation: BMC Genomics 2016 17:702
    Content type: Research article Published on:

  3. Pyramiding different resistance genes into one plant genotype confers enhanced resistance at the phenotypic level, but the molecular mechanisms underlying this effect are not well-understood. In soybean, aphid...

    Authors: Martha I. Natukunda, Jessica D. Hohenstein, Chantal E. McCabe, Michelle A. Graham, Yunhui Qi, Asheesh K. Singh and Gustavo C. MacIntosh
    Citation: BMC Genomics 2021 22:887
    Content type: Research article Published on:

  4. Neoplasia can be driven by mutations resulting in dysregulation of transcription. In the mesenchymal neoplasm, aggressive fibromatosis, subtractive hybridization identified sterile alpha motif domain 9 (SAMD9) as...

    Authors: Catherine F Li, Jeffrey R MacDonald, Robert Y Wei, Jocelyn Ray, Kimberly Lau, Christopher Kandel, Rachel Koffman, Sherilyn Bell, Stephen W Scherer and Benjamin A Alman
    Citation: BMC Genomics 2007 8:92
    Content type: Research article Published on:

  5. Microarray and DNA-sequencing based technologies continue to produce enormous amounts of data on gene expression. This data has great potential to illuminate our understanding of biology and medicine, but the ...

    Authors: Natalia Polouliakh, Paul Horton, Kazuhiro Shibanai, Kodai Takata, Vanessa Ludwig, Samik Ghosh and Hiroaki Kitano
    Citation: BMC Genomics 2018 19:715
    Content type: Software Published on:

  6. Non-heading Chinese cabbage (NHCC, Brassica rapa ssp. chinensis) is an important leaf vegetable grown worldwide. However, little is known about the molecular mechanisms underlying tolerance for extreme temperatur...

    Authors: Xiaoming Song, Gaofeng Liu, Zhinan Huang, Weike Duan, Huawei Tan, Ying Li and Xilin Hou
    Citation: BMC Genomics 2016 17:297
    Content type: Research article Published on:

  7. Cardiac cell fate specification occurs through progressive steps, and its gene expression regulation features are still being defined. There has been an increasing interest in understanding the coordination be...

    Authors: Isabela Tiemy Pereira, Lucia Spangenberg, Anny Waloski Robert, Rocío Amorín, Marco Augusto Stimamiglio, Hugo Naya and Bruno Dallagiovanna
    Citation: BMC Genomics 2019 20:219
    Content type: Research article Published on:

  8. Effective vector control is key to malaria prevention. However, this is now compromised by increased insecticide resistance due to continued reliance on insecticide-based control interventions. In Kenya, we ha...

    Authors: Diana Omoke, Lucy Mackenzie Impoinvil, Dieunel Derilus, Stephen Okeyo, Helga Saizonou, Nicola Mulder, Nsa Dada, Audrey Lenhart, Luc Djogbénou and Eric Ochomo
    Citation: BMC Genomics 2024 25:313
    Content type: Research Published on:

  9. Members of the fungal genus Trichoderma directly antagonize soil-borne fungal pathogens, and an increasing number of species are studied for their potential in biocontrol of plant pathogens in agriculture. Some s...

    Authors: Maria E Morán-Diez, Naomi Trushina, Netta Li Lamdan, Lea Rosenfelder, Prasun K Mukherjee, Charles M Kenerley and Benjamin A Horwitz
    Citation: BMC Genomics 2015 16:8
    Content type: Research article Published on:

  10. The extracellular promastigote and the intracellular amastigote stages alternate in the digenetic life cycle of the trypanosomatid parasite Leishmania. Amastigotes develop inside parasitophorous vacuoles of mamma...

    Authors: Pedro J Alcolea, Ana Alonso, Manuel J Gómez, Alicia Sánchez-Gorostiaga, Mercedes Moreno-Paz, Eduardo González-Pastor, Alfredo Toraño, Víctor Parro and Vicente Larraga
    Citation: BMC Genomics 2010 11:31
    Content type: Research article Published on:

  11. Clinopodium gracile (Benth.) Matsum (C. gracile) is an annual herb with pharmacological properties effective in the treatment of various diseases, including hepatic carcinoma. Triterpenoid saponins are crucial bi...

    Authors: Chunmiao Shan, Chenkai Wang, Shengxiang Zhang, Yuanyuan Shi, Kelong Ma, Qingshan Yang and Jiawen Wu
    Citation: BMC Genomics 2020 21:49
    Content type: Research article Published on:

  12. We previously showed that a VLDL- and LDL-rich mix of human native lipoproteins induces a set of repressive epigenetic marks, i.e. de novo DNA methylation, histone 4 hypoacetylation and histone 4 lysine 20 (H4K20...

    Authors: Rubén Rangel-Salazar, Marie Wickström-Lindholm, Carlos A Aguilar-Salinas, Yolanda Alvarado-Caudillo, Kristina BV Døssing, Manel Esteller, Emmanuel Labourier, Gertrud Lund, Finn C Nielsen, Dalia Rodríguez-Ríos, Martha O Solís-Martínez, Katarzyna Wrobel, Kazimierz Wrobel and Silvio Zaina
    Citation: BMC Genomics 2011 12:582
    Content type: Research article Published on:

  13. Ralstonia solanacearum, the causal agent of bacterial wilt, is a genetically diverse bacterial plant pathogen present in tropical and subtropical regions of the world that infects more than 200 plant species, inc...

    Authors: Ana M Bocsanczy, Ute CM Achenbach, Arianna Mangravita-Novo, Marjorie Chow and David J Norman
    Citation: BMC Genomics 2014 15:280
    Content type: Research article Published on:

  14. High temperatures, particularly at night, decrease rice yield and quality. As high nighttime temperatures (HNTs) become increasingly frequent due to climate change, it is imperative to develop rice crops that ...

    Authors: Chao He, Hong-Yu Zhang, Yong-Xin Zhang, Pei Fu, Li-Li You, Wen-Bo Xiao, Zhao-Hai Wang, Hai-Yan Song, Ying-Jin Huang and Jiang-Lin Liao
    Citation: BMC Genomics 2020 21:560
    Content type: Research article Published on:

  15. Bronchopulmonary dysplasia is a chronic lung disease of premature neonates characterized by arrested pulmonary alveolar development. There is increasing evidence that microRNAs (miRNAs) regulate translation of...

    Authors: Jie Dong, William A Carey, Stuart Abel, Christopher Collura, Guoqian Jiang, Sandra Tomaszek, Shari Sutor, Anja C Roden, Yan W Asmann, Y S Prakash and Dennis A Wigle
    Citation: BMC Genomics 2012 13:204
    Content type: Research article Published on:

  16. Soybean downy mildew (SDM), caused by Peronospora manshurica (Pm), is a major fungal disease in soybean. To date, little is known regarding the defense mechanism at molecular level and how soybean plants response...

    Authors: Hang Dong, Shuangfeng Shi, Chong Zhang, Sihui Zhu, Mei Li, Jie Tan, Yue Yu, Liping Lin, Shirong Jia, Xujing Wang, Yuanhua Wu and Yuhui Liu
    Citation: BMC Genomics 2018 19:366
    Content type: Research article Published on:

  17. Since papaya is a typical climacteric fruit, exogenous ethylene (ETH) applications can induce premature and quicker ripening, while 1-methylcyclopropene (1-MCP) slows down the ripening processes. Differential ...

    Authors: Yan Hong Shen, Bing Guo Lu, Li Feng, Fei Ying Yang, Jiao Jiao Geng, Ray Ming and Xiao Jing Chen
    Citation: BMC Genomics 2017 18:671
    Content type: Research article Published on:

  18. The different physiological repertoire of CA3 and CA1 neurons in the hippocampus, as well as their differing behaviour after noxious stimuli are ultimately based upon differences in the expressed genome. We ha...

    Authors: Dieter Newrzella, Payam S Pahlavan, Carola Krüger, Christine Boehm, Oliver Sorgenfrei, Helmut Schröck, Gisela Eisenhardt, Nadine Bischoff, Gerhard Vogt, Oliver Wafzig, Moritz Rossner, Martin H Maurer, Holger Hiemisch, Alfred Bach, Wolfgang Kuschinsky and Armin Schneider
    Citation: BMC Genomics 2007 8:370
    Content type: Research article Published on:

  19. Rhizobium leguminosarum bv. trifolii is a soil bacterium capable of establishing a symbiotic relationship with red clover (Trifolium pratense). The presence of surface polysaccharides ...

    Authors: Kamila Rachwał, Ewa Matczyńska and Monika Janczarek
    Citation: BMC Genomics 2015 16:1111
    Content type: Research article Published on:

  20. Rhizobial symbionts belong to the classes Alphaproteobacteria and Betaproteobacteria (called “alpha” and “beta”-rhizobia). Most knowledge on the genetic basis of symbiosis is based on model strains belonging t...

    Authors: Agnieszka Klonowska, Rémy Melkonian, Lucie Miché, Pierre Tisseyre and Lionel Moulin
    Citation: BMC Genomics 2018 19:105
    Content type: Research article Published on:

  21. Pulmonary arterial hypertension (PAH) is a lethal disease with pronounced narrowing of pulmonary vessels due to abnormal cell proliferation. The platelet-derived growth factor BB (PDGF-BB) is well known as a p...

    Authors: Jidong Chen, Xiaolei Cui, Zhengjiang Qian, Yanjiao Li, Kang Kang, Junle Qu, Li Li and Deming Gou
    Citation: BMC Genomics 2016 17:781
    Content type: Research article Published on:

  22. Modern human brains and skull shapes differ from other hominids. Brain growth disorders as micro- (ASPM, MCPH1) and macrocephaly (NFIX, GLI3) have been highlighted as relevant for the evolution in humans due t...

    Authors: Vanessa I. Romero, Benjamin Arias-Almeida and Stefanie A. Aguiar
    Citation: BMC Genomics 2022 23:849
    Content type: Research Published on:

  23. Noncoding RNAs (ncRNAs), including microRNAs (miRNAs) and long noncoding RNAs (lncRNAs), are pivotal regulators involved in the pathogenic mechanism of multiple coronaviruses. Porcine deltacoronavirus (PDCoV) ...

    Authors: Shan Jiang, Jianfei Chen, Xiuli Li, Weike Ren, Fengxiang Li, Ting Wang, Cheng Li, Zhimin Dong, Xiangxue Tian, Li Zhang, Lili Wang, Chao lu, Jingjing Chi, Li Feng and Minghua Yan
    Citation: BMC Genomics 2022 23:486
    Content type: Research Published on:

  24. Genome-wide surveys have detected cis-acting quantitative trait loci altering levels of RNA transcripts (RNA-eQTLs) by associating SNV alleles to transcript levels. However, the sensitivity and specificity of det...

    Authors: Seungeun Yeo, Colin A. Hodgkinson, Zhifeng Zhou, Jeesun Jung, Ming Leung, Qiaoping Yuan and David Goldman
    Citation: BMC Genomics 2016 17:620
    Content type: Research article Published on:

  25. The Mi-1 gene was the first identified and cloned gene that provides resistance to root-knot nematodes (RKNs) in cultivated tomato. However, owing to its temperature sensitivity, this gene does not meet the need ...

    Authors: Chong Du, Jingbin Jiang, He Zhang, Tingting Zhao, Huanhuan Yang, Dongye Zhang, Zhentong Zhao, Xiangyang Xu and Jingfu Li
    Citation: BMC Genomics 2020 21:250
    Content type: Research article Published on:

  26. The assembly and annotation of a genome is a valuable resource for a species, with applications ranging from conservation genomics to gene discovery. Genomic resource development is especially important for sp...

    Authors: Catherine M. Purcell, Arun S. Seetharam, Owyn Snodgrass, Sofia Ortega-García, John R. Hyde and Andrew J. Severin
    Citation: BMC Genomics 2018 19:31
    Content type: Research article Published on:

  27. The statistical thermodynamics based approach provides a promising framework for construction of the genotype-phenotype map in many biological systems. Among important aspects of a good model connecting the DN...

    Authors: Konstantin Kozlov, Vitaly V Gursky, Ivan V Kulakovskiy, Arina Dymova and Maria Samsonova
    Citation: BMC Genomics 2015 16(Suppl 13):S7
    Content type: Research Published on:

    This article is part of a Supplement: Volume 16 Supplement 13

  29. Mutations of the superoxide dismutase 1 (SOD1) gene are linked to amyotrophic lateral sclerosis (ALS), an invariably fatal neurological condition involving cortico-spinal degeneration. Mechanical injury can also ...

    Authors: Andrea Malaspina, Natasa Jokic, Wenlong L Huang and John V Priestley
    Citation: BMC Genomics 2008 9:500
    Content type: Research article Published on:

  31. The sheep is an important model animal for testing novel fracture treatments and other medical applications. Despite these medical uses and the well known economic and cultural importance of the sheep, relativ...

    Authors: Jochen Hecht, Heiner Kuhl, Stefan A Haas, Sebastian Bauer, Albert J Poustka, Jasmin Lienau, Hanna Schell, Asita C Stiege, Volkhard Seitz, Richard Reinhardt, Georg N Duda, Stefan Mundlos and Peter N Robinson
    Citation: BMC Genomics 2006 7:172
    Content type: Research article Published on:

  32. Disease emergence and production loss caused by cattle tick infestations have focused attention on genetic selection strategies to breed beef cattle with increased tick resistance. However, the mechanisms behi...

    Authors: Emily F. Mantilla Valdivieso, Elizabeth M. Ross, Ali Raza, Muhammad Noman Naseem, Muhammad Kamran, Ben J. Hayes, Nicholas N. Jonsson, Peter James and Ala E. Tabor
    Citation: BMC Genomics 2022 23:454
    Content type: Research Published on:

  33. Preterm delivery is the leading cause of neonatal morbidity and mortality. Two-thirds of preterm deliveries are idiopathic. The initiating molecular mechanisms behind spontaneous preterm delivery are unclear. ...

    Authors: Febilla Fernando, Remco Keijser, Peter Henneman, Anne-Marie F. van der Kevie-Kersemaekers, Marcel MAM Mannens, Joris AM van der Post, Gijs B. Afink and Carrie Ris-Stalpers
    Citation: BMC Genomics 2015 16:736
    Content type: Research article Published on:

  34. The vertebrate brain plays a critical role in the regulation of sexual maturation and reproduction by integrating environmental information with developmental and endocrine status. The European eel Anguilla angui...

    Authors: Allison M Churcher, Jose Martin Pujolar, Massimo Milan, Peter C Hubbard, Rute ST Martins, João L Saraiva, Mar Huertas, Luca Bargelloni, Tomaso Patarnello, Ilaria AM Marino, Lorenzo Zane and Adelino VM Canário
    Citation: BMC Genomics 2014 15:799
    Content type: Research article Published on:

  35. Stress is a generic term used to describe non-specific responses of the body to all kinds of challenges. A very large variability in the response can be observed across individuals, depending on numerous condi...

    Authors: Elena Terenina, Valérie Sautron, Caroline Ydier, Darya Bazovkina, Amélie Sevin-Pujol, Laure Gress, Yannick Lippi, Claire Naylies, Yvon Billon, Laurence Liaubet, Pierre Mormede and Nathalie Villa-Vialaneix
    Citation: BMC Genomics 2017 18:988
    Content type: Research article Published on:

  36. Gene regulation through cis-regulatory elements plays a crucial role in development and disease. A major aim of the post-genomic era is to be able to read the function of cis-regulatory elements through scrutiny ...

    Authors: Hugo J Parker, Paul Piccinelli, Tatjana Sauka-Spengler, Marianne Bronner and Greg Elgar
    Citation: BMC Genomics 2011 12:637
    Content type: Research article Published on:

  37. Genome comparisons between closely related species often show non-conserved regions across chromosomes. Some of them are located in specific regions of chromosomes and some are even confined to one or more ent...

    Authors: Chunzhao Zhao, Cees Waalwijk, Pierre JGM de Wit, Dingzhong Tang and Theo van der Lee
    Citation: BMC Genomics 2014 15:191
    Content type: Research article Published on:

  38. Declining oocyte quality in women with advanced age has been a major impediment to assisted reproductive treatments’ (ART) success rate. However, aging is often accompanied by a diminished ovarian reserve (DOR...

    Authors: Cong Zhang, Shi Song, Ming Yang, Liying Yan and Jie Qiao
    Citation: BMC Genomics 2023 24:655
    Content type: Research Published on:

  39. Myostatin, a muscle-specific member of the Transforming Growth Factor beta family, negatively regulates muscle development. Double-muscled (DM) cattle have a loss-of-function mutation in their myostatin gene r...

    Authors: Isabelle Cassar-Malek, Florent Passelaigue, Carine Bernard, Jean Léger and Jean-François Hocquette
    Citation: BMC Genomics 2007 8:63
    Content type: Research article Published on:

  40. Floral transition plays an important role in development, and proper time is necessary to improve the value of valuable ornamental trees. The molecular mechanisms of floral transition remain unknown in perenni...

    Authors: Zhi Wang, Wenjun Ma, Tianqing Zhu, Nan Lu, Fangqun Ouyang, Nan Wang, Guijuan Yang, Lisheng Kong, Guanzheng Qu, Shougong Zhang and Junhui Wang
    Citation: BMC Genomics 2020 21:508
    Content type: Research article Published on:

  42. DNA triplexes can naturally occur, co-localize and interact with many other regulatory DNA elements (e.g. G-quadruplex (G4) DNA motifs), specific DNA-binding proteins (e.g. transcription factors (TFs)), and mi...

    Authors: Piroon Jenjaroenpun and Vladimir A Kuznetsov
    Citation: BMC Genomics 2009 10(Suppl 3):S9
    Content type: Proceedings Published on:

    This article is part of a Supplement: Volume 10 Supplement 3

  43. Mosquito control programmes using chemical insecticides are increasingly threatened by the development of resistance. Such resistance can be the consequence of changes in proteins targeted by insecticides (tar...

    Authors: Jean-Philippe David, Frédéric Faucon, Alexia Chandor-Proust, Rodolphe Poupardin, Muhammad Asam Riaz, Aurélie Bonin, Vincent Navratil and Stéphane Reynaud
    Citation: BMC Genomics 2014 15:174
    Content type: Research article Published on:

  44. Among deuterostomes, the regenerative potential is maximally expressed in echinoderms, animals that can quickly replace most injured organs. In particular, sea cucumbers are excellent models for studying organ...

    Authors: Pablo A Ortiz-Pineda, Francisco Ramírez-Gómez, Judit Pérez-Ortiz, Sebastián González-Díaz, Francisco Santiago-De Jesús, Josue Hernández-Pasos, Cristina Del Valle-Avila, Carmencita Rojas-Cartagena, Edna C Suárez-Castillo, Karen Tossas, Ana T Méndez-Merced, José L Roig-López, Humberto Ortiz-Zuazaga and José E García-Arrarás
    Citation: BMC Genomics 2009 10:262
    Content type: Research article Published on:

  46. Visfatin is an adipokine associated with glucose and lipid metabolism. We previously reported two visfatin upstream single nucleotide polymorphisms (SNPs), c.-3187G > A (rs11977021) and c.-1537C > T (rs6133008...

    Authors: Delicia Shu Qin Ooi, Siong Gim Ong, Chew Kiat Heng, Kah Yin Loke and Yung Seng Lee
    Citation: BMC Genomics 2016 17:974
    Content type: Research article Published on:

  47. Potassium (K) is essential to plant growth and development. Foxtail millet (Setaria italic L.) is an important fodder grain crop in arid and semi-arid regions of Asia and Africa because of its strong tolerance to...

    Authors: Xinyou Cao, Liqin Hu, Xueyan Chen, Rongzhi Zhang, Dungong Cheng, Haosheng Li, Zhaoshi Xu, Liancheng Li, Yongbin Zhou, Aifeng Liu, Jianming Song, Cheng Liu, Jianjun Liu, Zhendong Zhao, Ming Chen and Youzhi Ma
    Citation: BMC Genomics 2019 20:136
    Content type: Research article Published on:

  49. In climacteric fruit-bearing species, the onset of fruit ripening is marked by a transient rise in respiration rate and autocatalytic ethylene production, followed by rapid deterioration in fruit quality. In n...

    Authors: Montserrat Saladié, Joaquin Cañizares, Michael A. Phillips, Manuel Rodriguez-Concepcion, Christian Larrigaudière, Yves Gibon, Mark Stitt, John Edward Lunn and Jordi Garcia-Mas
    Citation: BMC Genomics 2015 16:440
    Content type: Research article Published on:

  50. Acipenser baeri, one of the critically endangered animals on the verge of extinction, is a key species for evolutionary, developmental, physiology and conservation studies and a stando...

    Authors: Wei Song, Keji Jiang, Fengying Zhang, Yu Lin and Lingbo Ma
    Citation: BMC Genomics 2016 17:564
    Content type: Research article Published on:

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BMC Genomics

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