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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 39 of 128

  1. The bi-directional communication between the oocyte and its companion cumulus cells (CCs) is crucial for development and functions of both cell types. Transcripts that are exclusively expressed either in oocyt...

    Authors: A Regassa, F Rings, M Hoelker, U Cinar, E Tholen, C Looft, K Schellander and D Tesfaye
    Citation: BMC Genomics 2011 12:57
    Content type: Research article Published on:

  2. Cilia are microtubule-based organelles protruding from almost all mammalian cells which, when dysfunctional, result in genetic disorders called “ciliopathies”. High-throughput studies have revealed that cilia ...

    Authors: Roberto Amato, Manuela Morleo, Laura Giaquinto, Diego di Bernardo and Brunella Franco
    Citation: BMC Genomics 2014 15:658
    Content type: Research article Published on:

  3. The complex societies of ants and other social insects rely on sophisticated chemical communication. Two families of small soluble proteins, the odorant binding and chemosensory proteins (OBPs and CSPs), are b...

    Authors: Sean K McKenzie, Peter R Oxley and Daniel JC Kronauer
    Citation: BMC Genomics 2014 15:718
    Content type: Research article Published on:

  4. Planarians are renowned for their regenerative capacity and are an attractive model for the study of adult stem cells and tissue regeneration. In an effort to better understand the molecular mechanisms underly...

    Authors: Amy Hubert, Jordana M. Henderson, Martis W. Cowles, Kelly G. Ross, Matthew Hagen, Christa Anderson, Claudia J. Szeterlak and Ricardo M. Zayas
    Citation: BMC Genomics 2015 16:769
    Content type: Research article Published on:

  5. Grape cultivars and wines are distinguishable by their color, flavor and aroma profiles. Omic analyses (transcripts, proteins and metabolites) are powerful tools for assessing biochemical differences in biolog...

    Authors: Ryan Ghan, Steven C. Van Sluyter, Uri Hochberg, Asfaw Degu, Daniel W. Hopper, Richard L. Tillet, Karen A. Schlauch, Paul A. Haynes, Aaron Fait and Grant R. Cramer
    Citation: BMC Genomics 2015 16:946
    Content type: Research article Published on:

  6. Due to the absence of transcription initiation regulation of protein coding genes transcribed by RNA polymerase II, posttranscriptional regulation is responsible for the majority of gene expression changes in ...

    Authors: Pablo Smircich, Guillermo Eastman, Saloe Bispo, María Ana Duhagon, Eloise P Guerra-Slompo, Beatriz Garat, Samuel Goldenberg, David J Munroe, Bruno Dallagiovanna, Fabiola Holetz and Jose R Sotelo-Silveira
    Citation: BMC Genomics 2015 16:443
    Content type: Research article Published on:

  7. Increasing the nutrient concentration of wheat grains is important to ameliorate nutritional deficiencies in many parts of the world. Proteins and nutrients in the wheat grain are largely derived from the remo...

    Authors: Dario Cantu, Stephen P Pearce, Assaf Distelfeld, Michael W Christiansen, Cristobal Uauy, Eduard Akhunov, Tzion Fahima and Jorge Dubcovsky
    Citation: BMC Genomics 2011 12:492
    Content type: Research article Published on:

  8. Comparison of toxicogenomic data facilitates the identification of deregulated gene patterns and maximizes health risk prediction in human.

    Authors: Immacolata Porreca, Fulvio D’Angelo, Daniela Gentilcore, Emanuele Carchia, Angela Amoresano, Andrea Affuso, Michele Ceccarelli, Pasquale De Luca, Libera Esposito, Francesco M Guadagno, Massimo Mallardo, Antonio Nardone, Sergio Maccarone, Francesca Pane, Marzia Scarfò, Paolo Sordino…
    Citation: BMC Genomics 2014 15:1067
    Content type: Research article Published on:

  9. The sustainability of poultry farming relies on the development of more efficient and autonomous production systems in terms of feed supply. This implies a better integration of adaptive traits in breeding pro...

    Authors: Amélie Juanchich, Christelle Hennequet-Antier, Cédric Cabau, Elisabeth Le Bihan-Duval, Michel J. Duclos, Sandrine Mignon-Grasteau and Agnès Narcy
    Citation: BMC Genomics 2018 19:928
    Content type: Research article Published on:

  10. Trinitrobenzenesulphonic acid (TNBS) induced rat colitis is one of the most widely used models of inflammatory bowel disease (IBD), a condition whose aetiology and pathophysiology are incompletely understood. ...

    Authors: Olga Martínez-Augustin, Manel Merlos, Antonio Zarzuelo, María Dolores Suárez and Fermín Sánchez de Medina
    Citation: BMC Genomics 2008 9:490
    Content type: Research article Published on:

  11. DNA repair is essential for the maintenance of genome stability in all living beings. Genome size as well as the repertoire and abundance of DNA repair components may vary among prokaryotic species. The bacter...

    Authors: Alexey Y Gorbachev, Gleb Y Fisunov, Mark Izraelson, Darya V Evsyutina, Pavel V Mazin, Dmitry G Alexeev, Olga V Pobeguts, Tatyana N Gorshkova, Sergey I Kovalchuk, Dmitry E Kamashev and Vadim M Govorun
    Citation: BMC Genomics 2013 14:726
    Content type: Research article Published on:

  13. Meloidae (blister beetles) are known to synthetize cantharidin (CA), a toxic and defensive terpene mainly stored in male accessory glands (MAG) and emitted outward through reflex-bleeding. Recent progresses in...

    Authors: Emiliano Fratini, Marco Salvemini, Fabrizio Lombardo, Maurizio Muzzi, Marco Molfini, Silvia Gisondi, Elia Roma, Veronica D’Ezio, Tiziana Persichini, Tecla Gasperi, Paolo Mariottini, Andrea Di Giulio, Marco Alberto Bologna, Manuela Cervelli and Emiliano Mancini
    Citation: BMC Genomics 2021 22:808
    Content type: Research article Published on:

  14. Non-coding RNAs (ncRNAs) are key regulatory elements that control a wide range of cellular processes in all bacteria in which they have been studied. Taking advantage of recent technological innovations, we se...

    Authors: Matthew J Moody, Rachel A Young, Stephanie E Jones and Marie A Elliot
    Citation: BMC Genomics 2013 14:558
    Content type: Research article Published on:

  15. SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-box genes encode a family of plant-specific transcription factors (TFs) that play important roles in many growth and development processes including phase transition, le...

    Authors: Qin Zhou, Sisi Zhang, Feng Chen, Baojun Liu, Lan Wu, Fei Li, Jiaqi Zhang, Manzhu Bao and Guofeng Liu
    Citation: BMC Genomics 2018 19:193
    Content type: Research article Published on:

  16. Bisphenol S (BPS) is a common bisphenol A (BPA) substitute, since BPA is virtually banned worldwide. However, BPS and BPA have both endocrine disrupting properties. Their effects appear mostly in adulthood fol...

    Authors: Axelle Brulport, Daniel Vaiman, Elias Bou-Maroun, Marie-Christine Chagnon and Ludovic Le Corre
    Citation: BMC Genomics 2020 21:881
    Content type: Research article Published on:

  17. MicroRNAs (miRNAs) are a large class of tiny non-coding RNAs (~22-24 nt) that regulate diverse biological processes at the posttranscriptional level by controlling mRNA stability or translation. As a molecular...

    Authors: Limei Qin, Yaosheng Chen, Yuna Niu, Weiquan Chen, Qiwei Wang, Shuqi Xiao, Anning Li, Ying Xie, Jing Li, Xiao Zhao, Zuyong He and Delin Mo
    Citation: BMC Genomics 2010 11:320
    Content type: Research article Published on:

  18. Transcriptional regulation is primarily mediated by the binding of factors to non-coding regions in DNA. Identification of these binding regions enhances understanding of tissue formation and potentially facil...

    Authors: Dominic Maderazo, Jennifer A. Flegg, Manjula Algama, Mirana Ramialison and Jonathan Keith
    Citation: BMC Genomics 2022 23:78
    Content type: Methodology article Published on:

  19. Aberrant DNA methylation is a hallmark of many cancers. Classically there are two types of endometrial cancer, endometrioid adenocarcinoma (EAC), or Type I, and uterine papillary serous carcinoma (UPSC), or Ty...

    Authors: Bo Zhang, XiaoYun Xing, Jing Li, Rebecca F Lowdon, Yan Zhou, Nan Lin, Baoxue Zhang, Vasavi Sundaram, Katherine B Chiappinelli, Ian S Hagemann, David G Mutch, Paul J Goodfellow and Ting Wang
    Citation: BMC Genomics 2014 15:868
    Content type: Research article Published on:

  20. Brown rots are important fungal diseases of stone and pome fruits. They are caused by several Monilinia species but M. fructicola, M. laxa and M. fructigena are the most common all over the world. Although they h...

    Authors: Rita M. De Miccolis Angelini, Domenico Abate, Caterina Rotolo, Donato Gerin, Stefania Pollastro and Francesco Faretra
    Citation: BMC Genomics 2018 19:436
    Content type: Research article Published on:

  21. Variation in locomotor capacity among animals often reflects adaptations to different environments. Despite evidence that physical performance is heritable, the molecular basis of locomotor performance and per...

    Authors: Valérie Ducret, Adam J. Richards, Mathieu Videlier, Thibault Scalvenzi, Karen A. Moore, Konrad Paszkiewicz, Camille Bonneaud, Nicolas Pollet and Anthony Herrel
    Citation: BMC Genomics 2021 22:204
    Content type: Research article Published on:

  22. In order to get global molecular understanding of one of the most important crop diseases worldwide, we investigated compatible and incompatible interactions between Phytophthora infestans and potato (Solanum tub...

    Authors: Ashfaq Ali, Erik Alexandersson, Marianne Sandin, Svante Resjö, Marit Lenman, Pete Hedley, Fredrik Levander and Erik Andreasson
    Citation: BMC Genomics 2014 15:497
    Content type: Research article Published on:

  24. The phylum Apicomplexa comprises important unicellular human parasites such as Toxoplasma and Plasmodium. Eimeria is the largest and most diverse genus of apicomplexan parasites and some species of the genus are ...

    Authors: Emanuel Heitlinger, Simone Spork, Richard Lucius and Christoph Dieterich
    Citation: BMC Genomics 2014 15:696
    Content type: Research article Published on:

  25. The nuclear receptor peroxisome proliferator-activated receptor alpha (PPARα) regulates responses to chemical or physical stress in part by altering expression of genes involved in proteome maintenance. Many o...

    Authors: Beena Vallanat, Steven P Anderson, Holly M Brown-Borg, Hongzu Ren, Sander Kersten, Sudhakar Jonnalagadda, Rajagopalan Srinivasan and J Christopher Corton
    Citation: BMC Genomics 2010 11:16
    Content type: Research article Published on:

  26. Saccharomyces cerevisiae myosin type II-deficient (myo1 Δ) strains remain viable and divide, despite the absence of a cytokinetic ring, by activation of the PKC1-dependent cell wall integrity pathway (CWIP). Sinc...

    Authors: Marielis E Rivera-Ruiz, José F Rodríguez-Quiñones, Pearl Akamine and José R Rodríguez-Medina
    Citation: BMC Genomics 2010 11:690
    Content type: Research article Published on:

  27. Salmonid fishes are characterised by a very high level of variation in trophic, ecological, physiological, and life history adaptations. Some salmonid taxa show exceptional potential for fast, within-lake dive...

    Authors: Kevin Schneider, Colin E. Adams and Kathryn R. Elmer
    Citation: BMC Genomics 2019 20:1010
    Content type: Research article Published on:

  28. The two-spotted spider mite, Tetranychus urticae, is infected with Wolbachia, which have the ability to manipulate host reproduction and fitness. MicroRNAs (miRNAs) are small non-coding RNAs that are involved in ...

    Authors: Xia Rong, Yan-Kai Zhang, Kai-Jun Zhang and Xiao-Yue Hong
    Citation: BMC Genomics 2014 15:1122
    Content type: Research article Published on:

  29. Zinc (Zn) is an essential trace element. However, Zn bioavailability from commonly consumed plants may be reduced due to phytic acid. Zn supplementation has been used to treat diarrheal disease in children, an...

    Authors: Michelle M Martínez-Montemayor, Gretchen M Hill, Nancy E Raney, Valencia D Rilington, Robert J Tempelman, Jane E Link, Christopher P Wilkinson, Antonio M Ramos and Catherine W Ernst
    Citation: BMC Genomics 2008 9:421
    Content type: Research article Published on:

  30. A protein may bind to its target DNA sites constitutively, i.e., regardless of cell type. Intuitively, constitutive binding sites should be biologically functional. A prerequisite for understanding their funct...

    Authors: Yuanyuan Li, David M Umbach and Leping Li
    Citation: BMC Genomics 2014 15:27
    Content type: Methodology article Published on:

  31. Transmissible cancers lie at the intersection of oncology and infectious disease, two traditionally divergent fields for which gene expression studies are particularly useful for identifying the molecular basi...

    Authors: Christopher P. Kozakiewicz, Alexandra K. Fraik, Austin H. Patton, Manuel Ruiz-Aravena, David G. Hamilton, Rodrigo Hamede, Hamish McCallum, Paul A. Hohenlohe, Mark J. Margres, Menna E. Jones and Andrew Storfer
    Citation: BMC Genomics 2021 22:698
    Content type: Research Published on:

  32. The populations of the Arabian Peninsula remain the least represented in public genetic databases, both in terms of single nucleotide variants and of larger genomic mutations. We present the first high-resolut...

    Authors: Khalid A. Fakhro, Noha A. Yousri, Juan L. Rodriguez-Flores, Amal Robay, Michelle R. Staudt, Francisco Agosto-Perez, Jacqueline Salit, Joel A. Malek, Karsten Suhre, Amin Jayyousi, Mahmoud Zirie, Dora Stadler, Jason G. Mezey and Ronald G. Crystal
    Citation: BMC Genomics 2015 16:834
    Content type: Research article Published on:

  33. Mycobacterium bovis is the causative agent of bovine tuberculosis (BTB), a pathological infection with significant economic impact. Recent studies have highlighted the role of functional genomics to better unders...

    Authors: Kate E Killick, John A Browne, Stephen DE Park, David A Magee, Irene Martin, Kieran G Meade, Stephen V Gordon, Eamonn Gormley, Cliona O'Farrelly, Karsten Hokamp and David E MacHugh
    Citation: BMC Genomics 2011 12:611
    Content type: Research article Published on:

  35. Small RNA mediated gene silencing is a well-conserved regulatory pathway. In the parasite Entamoeba histolytica an endogenous RNAi pathway exists, however, the depth and diversity of the small RNA population rema...

    Authors: Hanbang Zhang, Gretchen M Ehrenkaufer, Neil Hall and Upinder Singh
    Citation: BMC Genomics 2013 14:53
    Content type: Research article Published on:

  36. Glucagon is an important hormone in the regulation of glucose homeostasis, particularly in the maintenance of euglycemia and prevention of hypoglycemia. In type 2 Diabetes Mellitus (T2DM), glucagon levels are ...

    Authors: Jianxin Yang, Margit L MacDougall, Michael T McDowell, Li Xi, Ru Wei, William J Zavadoski, Mark P Molloy, John D Baker, Max Kuhn, Over Cabrera and Judith L Treadway
    Citation: BMC Genomics 2011 12:281
    Content type: Research article Published on:

  38. Single-cell chromatin accessibility has emerged as a powerful means of understanding the epigenetic landscape of diverse tissues and cell types, but profiling cells from many independent specimens is challengi...

    Authors: Gregory T. Booth, Riza M. Daza, Sanjay R. Srivatsan, José L. McFaline-Figueroa, Rula Green Gladden, Andrew C. Mullen, Scott N. Furlan, Jay Shendure and Cole Trapnell
    Citation: BMC Genomics 2023 24:737
    Content type: Research Published on:

  39. An emerging Hi-C protocol has the ability to probe three-dimensional (3D) architecture and capture chromatin interactions in a genome-wide scale. It provides informative results to address how chromatin organi...

    Authors: Junbai Wang, Xun Lan, Pei-Yin Hsu, Hang-Kai Hsu, Kun Huang, Jeffrey Parvin, Tim H-M Huang and Victor X Jin
    Citation: BMC Genomics 2013 14:70
    Content type: Research article Published on:

  40. Tea is the most popular non-alcoholic health beverage in the world. The tea plant (Camellia sinensis (L.) O. Kuntze) needs to undergo a cold acclimation process to enhance its freezing tolerance in winter. Change...

    Authors: Xin-Chao Wang, Qiong-Yi Zhao, Chun-Lei Ma, Zong-Hong Zhang, Hong-Li Cao, Yi-Meng Kong, Chuan Yue, Xin-Yuan Hao, Liang Chen, Jian-Qiang Ma, Ji-Qiang Jin, Xuan Li and Ya-Jun Yang
    Citation: BMC Genomics 2013 14:415
    Content type: Research article Published on:

  41. Human peripheral blood monocytes (Mo) consist of subsets distinguished by expression of CD16 (FCγRIII) and chemokine receptors. Classical CD16- Mo express CCR2 and migrate in response to CCL2, while a minor CD16+

    Authors: Petronela Ancuta, Kuang-Yu Liu, Vikas Misra, Vanessa Sue Wacleche, Annie Gosselin, Xiaobo Zhou and Dana Gabuzda
    Citation: BMC Genomics 2009 10:403
    Content type: Research article Published on:

  42. Fungal plant pathogens cause serious agricultural losses worldwide. Alternaria arborescens is a major pathogen of tomato, with its virulence determined by the presence of a conditionally dispensable chromosome (C...

    Authors: Jinnan Hu, Chenxi Chen, Tobin Peever, Ha Dang, Christopher Lawrence and Thomas Mitchell
    Citation: BMC Genomics 2012 13:171
    Content type: Research article Published on:

  43. Pulmonary embolism (PE) is a severe disease that usually originates from deep vein thrombosis (DVT) of the lower extremities. This study set out to investigate the changes in the transcriptome of the pulmonary...

    Authors: Leszek Gromadziński, Łukasz Paukszto, Ewa Lepiarczyk, Agnieszka Skowrońska, Aleksandra Lipka, Karol G. Makowczenko, Elżbieta Łopieńska-Biernat, Jan P. Jastrzębski, Piotr Holak, Michał Smoliński and Marta Majewska
    Citation: BMC Genomics 2023 24:10
    Content type: Research Published on:

  44. Mud crab, Scylla paramamosain, a euryhaline crustacean species, mainly inhabits the Indo-Western Pacific region. Wild mud crab spawn in high-salt condition and the salinity reduced with the growth of the hatching...

    Authors: Yin Zhang, Qingyang Wu, Shaobin Fang, Shengkang Li, Huaiping Zheng, Yueling Zhang, Mhd Ikhwanuddin and Hongyu Ma
    Citation: BMC Genomics 2020 21:559
    Content type: Research article Published on:

  45. Corynebacterium resistens was initially recovered from human infections and recognized as a new coryneform species that is highly resistant to antimicrobial agents. Bacteremia associated with this organism in imm...

    Authors: Jasmin Schröder, Irena Maus, Katja Meyer, Stephanie Wördemann, Jochen Blom, Sebastian Jaenicke, Jessica Schneider, Eva Trost and Andreas Tauch
    Citation: BMC Genomics 2012 13:141
    Content type: Research article Published on:

  46. Hansenula polymorpha DL1 is a methylotrophic yeast, widely used in fundamental studies of methanol metabolism, peroxisome biogenesis and function, and also as a microbial cell factory for production of recombinan...

    Authors: Nikolai V Ravin, Michael A Eldarov, Vitaly V Kadnikov, Alexey V Beletsky, Jessica Schneider, Eugenia S Mardanova, Elena M Smekalova, Maria I Zvereva, Olga A Dontsova, Andrey V Mardanov and Konstantin G Skryabin
    Citation: BMC Genomics 2013 14:837
    Content type: Research article Published on:

  47. Although considerable progress has been made towards annotating the noncoding portion of the human and mouse genomes, regulatory elements in other species, such as livestock, remain poorly characterized. This ...

    Authors: Michelle M. Halstead, Colin Kern, Perot Saelao, Ying Wang, Ganrea Chanthavixay, Juan F. Medrano, Alison L. Van Eenennaam, Ian Korf, Christopher K. Tuggle, Catherine W. Ernst, Huaijun Zhou and Pablo J. Ross
    Citation: BMC Genomics 2020 21:698
    Content type: Research article Published on:

  49. Skeletal muscle growth and development from embryo to adult consists of a series of carefully regulated changes in gene expression. Understanding these developmental changes in agriculturally important species...

    Authors: Kelly RB Sporer, Robert J Tempelman, Catherine W Ernst, Kent M Reed, Sandra G Velleman and Gale M Strasburg
    Citation: BMC Genomics 2011 12:143
    Content type: Research article Published on:

  50. The adaptive evolution of plateau indigenous animals is a current research focus. However, phenotypic adaptation is complex and may involve the interactions between multiple genes or pathways, many of which re...

    Authors: Cuiling Wu, Shengchao Ma, Bingru Zhao, Chongkai Qin, Yujiang Wu, Jiang Di, Langda Suo and Xuefeng Fu
    Citation: BMC Genomics 2023 24:428
    Content type: Research Published on:

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