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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 62 of 128

  1. Under caged conditions, birds are affected more severely by environmental stressors such as dietary structure, activity space, human disturbances, and pathogens, which may be reflected in the gene expression i...

    Authors: Yu Wang, Jinxin Guo, Lin Wang, Hengjiu Tian and Jinling Sui
    Citation: BMC Genomics 2019 20:447
    Content type: Research article Published on:

  2. Teleost fish play important roles in aquatic ecosystems and aquaculture. Threadfins (Perciformes: Polynemidae) show a range of interesting biology, and are of considerable importance for both wild fisheries an...

    Authors: Zhe Qu, Wenyan Nong, Yifei Yu, Tobias Baril, Ho Yin Yip, Alexander Hayward and Jerome H. L. Hui
    Citation: BMC Genomics 2020 21:726
    Content type: Research article Published on:

  3. Antagonistic co-evolution can drive rapid adaptation in pathogens and shape genome architecture. Comparative genome analyses of several fungal pathogens revealed highly variable genomes, for many species chara...

    Authors: Alice Feurtey, Cécile Lorrain, Daniel Croll, Christoph Eschenbrenner, Michael Freitag, Michael Habig, Janine Haueisen, Mareike Möller, Klaas Schotanus and Eva H. Stukenbrock
    Citation: BMC Genomics 2020 21:588
    Content type: Research article Published on:

  4. The metabolite content of a seed and its ability to germinate are determined by genetic makeup and environmental effects during development. The interaction between genetics, environment and seed metabolism an...

    Authors: Leah Rosental, Adi Perelman, Noa Nevo, David Toubiana, Talya Samani, Albert Batushansky, Noga Sikron, Yehoshua Saranga and Aaron Fait
    Citation: BMC Genomics 2016 17:1047
    Content type: Research article Published on:

  5. The human pathogen Trichomonas vaginalis is a parabasalian flagellate that is estimated to infect 3% of the world’s population annually. With a 160 megabase genome and up to 60,000 genes residing in six chromosom...

    Authors: Christian Woehle, Gary Kusdian, Claudia Radine, Dan Graur, Giddy Landan and Sven B Gould
    Citation: BMC Genomics 2014 15:906
    Content type: Research article Published on:

  6. Social dominance is important for the reproductive success of males in many species. In the black-faced blenny (Tripterygion delaisi) during the reproductive season, some males change color and invest in nest mak...

    Authors: Celia Schunter, Steven V Vollmer, Enrique Macpherson and Marta Pascual
    Citation: BMC Genomics 2014 15:167
    Content type: Research article Published on:

  7. Differential expression (DE) analysis of RNA-seq data still poses inferential challenges, such as handling of transcripts characterized by low expression levels. In this study, we use a plasmode-based approach...

    Authors: Seth Raithel, Loretta Johnson, Matthew Galliart, Sue Brown, Jennifer Shelton, Nicolae Herndon and Nora M. Bello
    Citation: BMC Genomics 2016 17:140
    Content type: Research article Published on:

  9. There is increasing interest in using intestinal organoids to study complex traits like feed efficiency (FE) and host-microbe interactions. The aim of this study was to investigate differences in the molecular...

    Authors: Ole Madsen, Roxann S.C. Rikkers, Jerry M. Wells, Rob Bergsma, Soumya K. Kar, Nico Taverne, Anja J. Taverne-Thiele, Esther D. Ellen and Henri Woelders
    Citation: BMC Genomics 2024 25:173
    Content type: Research Published on:

  11. Considerations in applying association mapping (AM) to plant breeding are population structure and size: not accounting for structure and/or using small populations can lead to elevated false-positive rates. T...

    Authors: Alfonso Cuesta-Marcos, Péter Szűcs, Timothy J Close, Tanya Filichkin, Gary J Muehlbauer, Kevin P Smith and Patrick M Hayes
    Citation: BMC Genomics 2010 11:707
    Content type: Research article Published on:

  12. The nootropic neuroprotective peptide Semax (Met-Glu-His-Phe-Pro-Gly-Pro) has proved efficient in the therapy of brain stroke; however, the molecular mechanisms underlying its action remain obscure. Our genome...

    Authors: Ekaterina V Medvedeva, Veronika G Dmitrieva, Oksana V Povarova, Svetlana A Limborska, Veronika I Skvortsova, Nikolay F Myasoedov and Lyudmila V Dergunova
    Citation: BMC Genomics 2014 15:228
    Content type: Research article Published on:

  13. Polyploidization, pervasive among higher plant species, enhances adaptation to water deficit, but the physiological and molecular advantages need to be investigated widely. Long non-coding RNAs (lncRNAs) are i...

    Authors: Liang Xiao, Xiao-Hong Shang, Sheng Cao, Xiang-Yu Xie, Wen-Dan Zeng, Liu-Ying Lu, Song-Bi Chen and Hua-Bing Yan
    Citation: BMC Genomics 2019 20:514
    Content type: Research article Published on:

  15. Solanum commersonii is a wild potato species that exhibits high tolerance to both biotic and abiotic stresses and has been used as a source of genes for introgression into cultivated potato. Am...

    Authors: A Paola Zuluaga, Montserrat Solé, Haibin Lu, Elsa Góngora-Castillo, Brieanne Vaillancourt, Nuria Coll, C Robin Buell and Marc Valls
    Citation: BMC Genomics 2015 16:246
    Content type: Research article Published on:

  16. The Cancer Genome Atlas (TCGA) has generated comprehensive molecular profiles. We aim to identify a set of genes whose expression patterns can distinguish diverse tumor types. Those features may serve as bioma...

    Authors: Yuanyuan Li, Kai Kang, Juno M. Krahn, Nicole Croutwater, Kevin Lee, David M. Umbach and Leping Li
    Citation: BMC Genomics 2017 18:508
    Content type: Research article Published on:

  19. Copper was used for many years in aquaculture operations as an effective algaecide or a parasite treatment of fish. It is an essential nutrient with numerous functions in organisms, but is toxic at high concen...

    Authors: Wenjie Jin, Zixuan Li, Fengxia Ran, Shen Huang, Kefan Huo, Jianjuan Li, Qingshuo Han, Guojie Wang, Zhenji Wang, Shenlong Jian, Kemao Li and Changzhong Li
    Citation: BMC Genomics 2021 22:416
    Content type: Research article Published on:

  20. Over the past 20 years, many marine seabird populations have been gradually declining and the factors driving this ongoing deterioration are not always well understood. Avipoxvirus infections have been found i...

    Authors: Subir Sarker, Shubhagata Das, Jennifer L. Lavers, Ian Hutton, Karla Helbig, Jacob Imbery, Chris Upton and Shane R. Raidal
    Citation: BMC Genomics 2017 18:298
    Content type: Research article Published on:

  21. Soil-borne fungi of the Fusarium oxysporum species complex cause devastating wilt disease on many crops including legumes that supply human dietary protein needs across many parts of the globe. We present and com...

    Authors: Angela H. Williams, Mamta Sharma, Louise F. Thatcher, Sarwar Azam, James K. Hane, Jana Sperschneider, Brendan N. Kidd, Jonathan P. Anderson, Raju Ghosh, Gagan Garg, Judith Lichtenzveig, H. Corby Kistler, Terrance Shea, Sarah Young, Sally-Anne G. Buck, Lars G. Kamphuis…
    Citation: BMC Genomics 2016 17:191
    Content type: Research article Published on:

  22. Microarray gene expression (MAGE) signatures allow insights into the transcriptional processes of leukemias and may evolve as a molecular diagnostic test. Introduction of MAGE into clinical practice of leukemi...

    Authors: Marta Campo Dell'Orto, Andrea Zangrando, Luca Trentin, Rui Li, Wei-min Liu, Geertruy te Kronnie, Giuseppe Basso and Alexander Kohlmann
    Citation: BMC Genomics 2007 8:188
    Content type: Methodology article Published on:

  23. Shrimp culture is a fast growing aquaculture sector, but in recent years there has been a shift away from tiger shrimp Penaeus monodon to other species. This is largely due to the susceptibility of P. monodon to ...

    Authors: Nicholas A Robinson, Gopalapillay Gopikrishna, Matthew Baranski, Vinaya Kumar Katneni, Mudagandur S Shekhar, Jayakani Shanmugakarthik, Sarangapani Jothivel, Chavali Gopal, Pitchaiyappan Ravichandran, Thomas Gitterle and Alphis G Ponniah
    Citation: BMC Genomics 2014 15:731
    Content type: Research article Published on:

  24. Tissue differentiation is accompanied by genome-wide changes in the underlying chromatin structure and dynamics, or epigenome. By controlling when, where, and what regulatory factors have access to the underly...

    Authors: Ky Sha, Sam G Gu, Luiz C Pantalena-Filho, Amy Goh, Jamie Fleenor, Daniel Blanchard, Chaya Krishna and Andrew Fire
    Citation: BMC Genomics 2010 11:465
    Content type: Methodology article Published on:

  25. Excessive deposition of abdominal fat poses serious problems in broilers owing to rapid growth. Recently, the evolution of the existing knowledge on long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) ...

    Authors: Yang Jing, Bohan Cheng, Haoyu Wang, Xue Bai, Qi Zhang, Ning Wang, Hui Li and Shouzhi Wang
    Citation: BMC Genomics 2022 23:790
    Content type: Research Published on:

  27. Tissues and their component cells have unique DNA methylation profiles comprising DNA methylation patterns of tissue-dependent and differentially methylated regions (T-DMRs). Previous studies reported that DNA...

    Authors: Keiji Hirabayashi, Kunio Shiota and Shintaro Yagi
    Citation: BMC Genomics 2013 14:82
    Content type: Research article Published on:

  28. Pancreatic cancer is the 5th leading cause of cancer death in both males and females. In recent years, a wealth of gene and protein expression studies have been published broadening our understanding of pancre...

    Authors: Claude Chelala, Stephan A Hahn, Hannah J Whiteman, Sayka Barry, Deepak Hariharan, Tomasz P Radon, Nicholas R Lemoine and Tatjana Crnogorac-Jurcevic
    Citation: BMC Genomics 2007 8:439
    Content type: Database Published on:

  29. Histone wrapping of DNA into nucleosomes almost certainly evolved in the Archaea, and predates Eukaryotes. In Eukaryotes, nucleosome positioning plays a central role in regulating gene expression and is direct...

    Authors: Narasimharao Nalabothula, Liqun Xi, Sucharita Bhattacharyya, Jonathan Widom, Ji-Ping Wang, John N Reeve, Thomas J Santangelo and Yvonne N Fondufe-Mittendorf
    Citation: BMC Genomics 2013 14:391
    Content type: Research article Published on:

  30. A colony of the hydrozoan Hydractinia symbiolongicarpus comprises genetically identical yet morphologically distinct and functionally specialized polyp types. The main labor divisions are between feeding, reprodu...

    Authors: Steven M Sanders, Mariya Shcheglovitova and Paulyn Cartwright
    Citation: BMC Genomics 2014 15:406
    Content type: Research article Published on:

  31. The plant-specific IQ67-domain (IQD) gene family plays an important role in plant development and stress responses. However, little is known about the IQD family in common wheat (Triticum aestivum L), an agricult...

    Authors: Qinglin Ke, Huifan Sun, Minqiang Tang, Ruihan Luo, Yan Zeng, Mengxing Wang, Yihan Li, Zhimin Li and Licao Cui
    Citation: BMC Genomics 2022 23:264
    Content type: Research Published on:

  32. Despite its primary economic importance, genomic information on olive tree is still lacking. 454 pyrosequencing was used to enrich the very few sequence data currently available for the Olea europaea species and ...

    Authors: Fiammetta Alagna, Nunzio D'Agostino, Laura Torchia, Maurizio Servili, Rosa Rao, Marco Pietrella, Giovanni Giuliano, Maria Luisa Chiusano, Luciana Baldoni and Gaetano Perrotta
    Citation: BMC Genomics 2009 10:399
    Content type: Research article Published on:

  33. Phylogenetic footprinting is an important computational technique for identifying cis-regulatory motifs in orthologous regulatory regions from multiple genomes, as motifs tend to evolve slower than their surround...

    Authors: Bingqiang Liu, Hanyuan Zhang, Chuan Zhou, Guojun Li, Anne Fennell, Guanghui Wang, Yu Kang, Qi Liu and Qin Ma
    Citation: BMC Genomics 2016 17:578
    Content type: Methodology article Published on:

  34. Walnut anthracnose caused by Colletotrichum gloeosporioides (Penz.) Penz. and Sacc. is an important walnut production problem in China. Although the long non-coding RNAs (lncRNAs) are important for plant disease ...

    Authors: Shan Feng, Hongcheng Fang, Xia Liu, Yuhui Dong, Qingpeng Wang and Ke Qiang Yang
    Citation: BMC Genomics 2021 22:15
    Content type: Research article Published on:

  35. Variation at the level of gene expression is abundant in natural populations and is thought to contribute to the adaptive divergence of populations and species. Gene expression also differs considerably betwee...

    Authors: Lena Müller, Stephan Hutter, Rayna Stamboliyska, Sarah S Saminadin-Peter, Wolfgang Stephan and John Parsch
    Citation: BMC Genomics 2011 12:81
    Content type: Research article Published on:

  36. Allergic contact dermatitis (ACD) develops upon exposure to certain chemical compounds termed skin sensitizers. To reduce the occurrence of skin sensitizers, chemicals are regularly screened for their capacity...

    Authors: Andy Forreryd, Henrik Johansson, Ann-Sofie Albrekt and Malin Lindstedt
    Citation: BMC Genomics 2014 15:379
    Content type: Research article Published on:

  37. Chlamydiae species are of much importance from a clinical viewpoint. Their diversity both in terms of their numbers as well as clinical involvement are presently believed to be significantly underestimated. Th...

    Authors: Emma Griffiths, Michael S Ventresca and Radhey S Gupta
    Citation: BMC Genomics 2006 7:14
    Content type: Research article Published on:

  38. Adhesion G protein-coupled receptors (aGPCRs) are the second largest of the five GPCR families and are essential for a wide variety of physiological processes. Zebrafish have proven to be a very effective mode...

    Authors: Breanne L Harty, Arunkumar Krishnan, Nicholas E Sanchez, Helgi B Schiöth and Kelly R Monk
    Citation: BMC Genomics 2015 16:62
    Content type: Research article Published on:

  39. Compelling evidence exists that magnetic fields modulate living systems. To date, however, rigorous studies have focused on identifying the molecular-level biosensor (e.g., radical ion pairs or membranes) or o...

    Authors: Zhiyun Wang, Anshu Sarje, Pao-Lin Che and Kevin J Yarema
    Citation: BMC Genomics 2009 10:356
    Content type: Research article Published on:

  40. The Argentine stem weevil (ASW, Listronotus bonariensis) is a significant pasture pest in Aotearoa New Zealand, primarily controlled by the parasitoid biocontrol agent Microctonus hyperodae. Despite providing eff...

    Authors: Sarah N. Inwood, Thomas W. R. Harrop, Morgan W. Shields, Stephen L. Goldson and Peter K. Dearden
    Citation: BMC Genomics 2024 25:311
    Content type: Research Published on:

  41. Coexistence and transition of diverse sex determination strategies have been revealed in some ectothermic species, but the variation between males caused by different sex determination strategies and the under...

    Authors: Yao-Jun Zhu, Xi-Yin Li, Jun Zhang, Zhi Li, Miao Ding, Xiao-Juan Zhang, Li Zhou and Jian-Fang Gui
    Citation: BMC Genomics 2018 19:437
    Content type: Research article Published on:

  42. The pathogenesis of vitiligo remains unclear. The genes encoding vitiligo-related RNA-binding proteins (RBPs) and their underlying pathogenic mechanism have not been determined.

    Authors: Jingzhan Zhang, Fang Xiang, Yuan Ding, Wen Hu, Hongjuan Wang, Xiangyue Zhang, Zixian Lei, Tingting Li, Peng Wang and Xiaojing Kang
    Citation: BMC Genomics 2024 25:236
    Content type: Research Published on:

  43. Genes in the CCCH family encode zinc finger proteins containing the motif with three cysteines and one histidine residues. They have been known to play important roles in RNA processing as RNA-binding proteins...

    Authors: Dong Wang, Yinghui Guo, Changai Wu, Guodong Yang, Yingying Li and Chengchao Zheng
    Citation: BMC Genomics 2008 9:44
    Content type: Research article Published on:

  44. Heterosis has successfully enhanced maize productivity and quality. Although significant progress has been made in delineating the genetic basis of heterosis, the molecular mechanisms underlying its genetic co...

    Authors: Weimin Zhan, Lianhua Cui, Shuling Yang, Kangni Zhang, Yanpei Zhang and Jianping Yang
    Citation: BMC Genomics 2024 25:476
    Content type: Research Published on:

  45. Pseudomonas aeruginosa, a pathogen infecting those with cystic fibrosis, encounters toxicity from phagocyte-derived reactive oxidants including hydrogen peroxide during active infection. P. aeruginosa responds wi...

    Authors: Wook Chang, David A Small, Freshteh Toghrol and William E Bentley
    Citation: BMC Genomics 2005 6:115
    Content type: Research article Published on:

  46. Alternative splicing (AS) is a principal mode of genetic regulation and one of the most widely used mechanisms to generate structurally and functionally distinct mRNA and protein variants. Dysregulation of AS ...

    Authors: Zheng Zhang, Limei Dong, Hai Tao, Yusong Dong, Wei Xiang, Fenghua Tao and Yingchun Zhao
    Citation: BMC Genomics 2024 25:293
    Content type: Research Published on:

  47. Since drought can seriously affect plant growth and development and little is known about how the oscillations of gene expression during the drought stress-acclimation response in soybean is affected, we appli...

    Authors: Fabiana Aparecida Rodrigues, Renata Fuganti-Pagliarini, Juliana Marcolino-Gomes, Thiago Jonas Nakayama, Hugo Bruno Correa Molinari, Francisco Pereira Lobo, Frank G Harmon and Alexandre Lima Nepomuceno
    Citation: BMC Genomics 2015 16:505
    Content type: Research article Published on:

  48. Regulatory T cells (Tregs) play an essential role in the control of the immune response. Treg cells represent important targets for therapeutic interventions of the immune system. Therefore, it will be very im...

    Authors: Rudi Alberts, Hairong Chen, Claudia Pommerenke, August B Smit, Sabine Spijker, Robert W Williams, Robert Geffers, Dunja Bruder and Klaus Schughart
    Citation: BMC Genomics 2011 12:610
    Content type: Research article Published on:

  49. Litter size in pigs is a major factor affecting the profitability in the pig industry. The peri-implantation window in pigs is characterized by the coordinated interactions between the maternal uterine endomet...

    Authors: Ting Gu, Meng-jin Zhu, Martine Schroyen, Long Qu, Dan Nettleton, Dan Kuhar, Joan K Lunney, Jason W Ross, Shu-hong Zhao and Christopher K Tuggle
    Citation: BMC Genomics 2014 15:156
    Content type: Research article Published on:

  50. Buckwheat, consisting of two cultivated species Fagopyrum tataricum and F. esculentum, is the richest source of flavonoid rutin. Vegetative tissues of both the Fagopyrum species contain almost similar amount of r...

    Authors: Nidhi Gupta, Pradeep Kumar Naik and Rajinder Singh Chauhan
    Citation: BMC Genomics 2012 13:231
    Content type: Research article Published on:

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