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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 63 of 128

  1. The TIFY gene family is a group of plant-specific transcription factors involved in regulation of plant growth and development and a variety of stress responses. However, the TIFY family has not yet been well cha...

    Authors: Junjie Tao, Huimin Jia, Mengting Wu, Wenqi Zhong, Dongfeng Jia, Zupeng Wang and Chunhui Huang
    Citation: BMC Genomics 2022 23:179
  2. Voltage-gated Na+ channel β1 (Scn1b) subunits are multi-functional proteins that play roles in current modulation, channel cell surface expression, cell adhesion, cell migration, and neurite outgrowth. We have sh...

    Authors: Amanda J Fein, Laurence S Meadows, Chunling Chen, Emily A Slat and Lori L Isom
    Citation: BMC Genomics 2007 8:226
  3. Aplastic anemia (AA) is a bone marrow failure syndrome mostly characterized by an immune-mediated destruction of marrow hematopoietic progenitor/stem cells. The resulting hypocellularity limits a detailed anal...

    Authors: Anke Franzke, Robert Geffers, J Katrin Hunger, Susanne Pförtner, Wenji Piao, Philipp Ivanyi, Jens Grosse, Michael Probst-Kepper, Arnold Ganser and Jan Buer
    Citation: BMC Genomics 2006 7:263
  4. Intramuscular adipocytes differentiation is a complex process, which is regulated by various transcription factor, protein factor regulators and signal transduction pathways. However, the proteins and signal p...

    Authors: Yu Du, Yong Wang, Qing Xu, Jiangjiang Zhu and Yaqiu Lin
    Citation: BMC Genomics 2021 22:417
  5. Nutrition and cell size play an important role in the determination of caste differentiation in queen and worker of honeybees (Apis mellifera), whereas the haploid genome dominates the differentiation of drones. ...

    Authors: Yi Bo Liu, Yao Yi, Amal Abdelmawla, Yun Lin Zheng, Zhi Jiang Zeng and Xu Jiang He
    Citation: BMC Genomics 2021 22:699
  6. The skeletal muscle growth rate and body size of Tibetan pigs (TIB) are lower than Large white pigs (LW). However, the underlying genetic basis attributing to these differences remains uncertain. To address th...

    Authors: Heli Xiong, Yan Zhang, Zhiyong Zhao and Qian Sha
    Citation: BMC Genomics 2024 25:588
  7. Gastrointestinal nematodes constitute a major cause of morbidity and mortality in grazing ruminants. Individual animals or breeds, however, are known to differ in their resistance to infection. Gene expression...

    Authors: Orla M Keane, Amonida Zadissa, Theresa Wilson, Dianne L Hyndman, Gordon J Greer, David B Baird, Alan F McCulloch, Allan M Crawford and John C McEwan
    Citation: BMC Genomics 2006 7:42
  8. Assisted reproductive technologies (ART) are widely used to treat fertility issues in humans and for the production of embryos in mammalian livestock. The use of these techniques, however, is not without conse...

    Authors: Alan M. O’Doherty, Paul McGettigan, Rachelle E. Irwin, David A. Magee, Dominic Gagne, Eric Fournier, Abdullah Al-Naib, Marc-André Sirard, Colum P. Walsh, Claude Robert and Trudee Fair
    Citation: BMC Genomics 2018 19:438
  9. The evolutionarily conserved Sonic Hedgehog (Shh) signaling pathway is essential for embryogenesis and orofacial development. SHH ligand secreted from the surface ectoderm activates pathway activity in the und...

    Authors: Joshua L. Everson, Dustin M. Fink, Hannah M. Chung, Miranda R. Sun and Robert J. Lipinski
    Citation: BMC Genomics 2018 19:497
  10. B-box (BBX) proteins play important roles in regulating plant growth, development, and abiotic stress responses. BBX family genes have been identified and functionally characterized in many plant species, but ...

    Authors: Xiaoming Liu, Wenying Sun, Bin Ma, Yan Song, Qingxun Guo, Lianxia Zhou, Kuishen Wu, Xinsheng Zhang and Chunyu Zhang
    Citation: BMC Genomics 2023 24:584
  11. Epigenetic modifications play important roles in the regulation of plant development. DNA methylation is an important epigenetic modification that dynamically regulates gene expression during developmental pro...

    Authors: Jihong Hu, Xiaojun Chen, Hongyuan Zhang and Yi Ding
    Citation: BMC Genomics 2015 16:102
  12. Polyploidy and hybridization are both recognized as major forces in evolution. Most of our current knowledge about differences in gene regulation in polyploid hybrids comes from plant studies. The gene express...

    Authors: Li Ren, Chenchen Tang, Wuhui Li, Jialin Cui, Xingjun Tan, Yafeng Xiong, Jie Chen, Jun Wang, Jun Xiao, Yi Zhou, Jing Wang, Min Tao, Chun Zhang and Shaojun Liu
    Citation: BMC Genomics 2017 18:38
  13. miRNAs play important roles in the regulation of gene functions. Maternal dietary modifications during pregnancy and gestation have long-term effects on the offspring, but it is not known whether a maternal hi...

    Authors: Junlong Zhang, Fang Zhang, Xavier Didelot, Kimberley D Bruce, Felino R Cagampang, Manu Vatish, Mark Hanson, Hendrik Lehnert, Antonio Ceriello and Christopher D Byrne
    Citation: BMC Genomics 2009 10:478
  14. Somatic mutations occurring within meristems of vegetative propagation material have had a major role in increasing the genetic diversity of the domesticated grapevine (Vitis vinifera subsp. vinifera). The most w...

    Authors: Vanessa Ferreira, José Tomás Matus, Olinda Pinto-Carnide, David Carrasco, Rosa Arroyo-García and Isaura Castro
    Citation: BMC Genomics 2019 20:952
  15. Designing sustainable animal production systems that better balance productivity and resistance to disease is a major concern. In order to address questions related to immunity and resistance to disease in pig...

    Authors: Yu Gao, Laurence Flori, Jérome Lecardonnel, Diane Esquerré, Zhi-Liang Hu, Angélique Teillaud, Gaëtan Lemonnier, Francois Lefèvre, Isabelle P Oswald and Claire Rogel-Gaillard
    Citation: BMC Genomics 2010 11:292
  16. Chlamydomonas reinhardtii is widely accepted as a model organism regarding photosynthesis, circadian rhythm, cell mobility, phototaxis, and biotechnology. The complete annotation of the genome allows transcriptom...

    Authors: Jörg Toepel, Stefan P Albaum, Samuel Arvidsson, Alexander Goesmann, Marco la Russa, Kristin Rogge and Olaf Kruse
    Citation: BMC Genomics 2011 12:579
  17. Brain sexual differentiation is sculpted by precise coordination of steroid hormones during development. Programming of several brain regions in males depends upon aromatase conversion of testosterone to estro...

    Authors: Madison T. Ortega, Nathan J. Bivens, Takamichi Jogahara, Asato Kuroiwa, Scott A. Givan and Cheryl S. Rosenfeld
    Citation: BMC Genomics 2019 20:87
  18. Quantitative detection of histone modifications has emerged in the recent years as a major means for understanding such biological processes as chromosome packaging, transcriptional activation, and DNA damage....

    Authors: Qijin Yin, Mengmeng Wu, Qiao Liu, Hairong Lv and Rui Jiang
    Citation: BMC Genomics 2019 20(Suppl 2):193

    This article is part of a Supplement: Volume 20 Supplement 2

  19. Availability of plant genome sequences has led to significant advances. However, with few exceptions, the great majority of existing genome assemblies are derived from short read sequencing technologies with h...

    Authors: Peipei Wang, Fanrui Meng, Bethany M. Moore and Shin-Han Shiu
    Citation: BMC Genomics 2021 22:99
  20. The purpose of gene expression analysis is to look for the association between regulation of gene expression levels and phenotypic variations. This association based on gene expression profile has been used to...

    Authors: Shu-Chuan Chen, Tsung-Hsien Tsai, Cheng-Han Chung and Wen-Hsiung Li
    Citation: BMC Genomics 2015 16:786
  21. MicroRNAs (miRNAs) are small non-coding RNAs that can exert multilevel inhibition/repression at a post-transcriptional or protein synthesis level during disease or development. Characterisation of miRNAs in ad...

    Authors: King-Hwa Ling, Peter J Brautigan, Christopher N Hahn, Tasman Daish, John R Rayner, Pike-See Cheah, Joy M Raison, Sandra Piltz, Jeffrey R Mann, Deidre M Mattiske, Paul Q Thomas, David L Adelson and Hamish S Scott
    Citation: BMC Genomics 2011 12:176
  22. The sugarcane aphid (SCA; Melanaphis sacchari) has emerged as a key pest on sorghum in the United States that feeds from the phloem tissue, drains nutrients, and inflicts physical damage to plants. Previously, it...

    Authors: Heena Puri, Sajjan Grover, Lise Pingault, Scott E. Sattler and Joe Louis
    Citation: BMC Genomics 2023 24:441
  23. As a photoperiod-sensitive and self-pollinated species, the growth periods traits play important roles in the adaptability and yield of soybean. To examine the genetic architecture of soybean growth periods, w...

    Authors: Minmin Li, Ying Liu, Yahan Tao, Chongjing Xu, Xin Li, Xiaoming Zhang, Yingpeng Han, Xue Yang, Jingzhe Sun, Wenbin Li, Dongmei Li, Xue Zhao and Lin Zhao
    Citation: BMC Genomics 2019 20:987
  24. Transcription factors (TFs) play important roles in plants. Among the major TFs, GATA plays a crucial role in plant development, growth, and stress responses. However, there have been few studies on the GATA g...

    Authors: Dili Lai, Xin Yao, Jun Yan, Anjing Gao, Hao Yang, Dabing Xiang, Jingjun Ruan, Yu Fan and Jianping Cheng
    Citation: BMC Genomics 2022 23:549
  25. Whole genome duplication (WGD) and tandem duplication (TD) provide two critical sources of raw genetic material for genome complexity and evolutionary novelty. Little is known about the complexity of the Sesamum ...

    Authors: Jingyin Yu, Linhai Wang, Hui Guo, Boshou Liao, Graham King and Xiurong Zhang
    Citation: BMC Genomics 2017 18:257
  26. Cellular processes underlying memory formation are evolutionary conserved, but natural variation in memory dynamics between animal species or populations is common. The genetic basis of this fascinating phenom...

    Authors: Katja M Hoedjes, Hans M Smid, Elio GWM Schijlen, Louise EM Vet and Joke JFA van Vugt
    Citation: BMC Genomics 2015 16:162
  27. PCR amplicon sequencing has been widely used as a targeted approach for both DNA and RNA sequence analysis. High multiplex PCR has further enabled the enrichment of hundreds of amplicons in one simple reaction...

    Authors: Quan Peng, Ravi Vijaya Satya, Marcus Lewis, Pranay Randad and Yexun Wang
    Citation: BMC Genomics 2015 16:589
  28. The genome of Vibrionaceae bacteria, which consists of two circular chromosomes, is replicated in a highly ordered fashion. In fast-growing bacteria, multifork replication results in higher gene copy numbers and ...

    Authors: Cecilie Bækkedal Sonnenberg, Tim Kahlke and Peik Haugen
    Citation: BMC Genomics 2020 21:695
  29. The genus Erwinia includes plant-associated pathogenic and non-pathogenic Enterobacteria. Important pathogens such as Erwinia amylovora, the causative agent of fire blight and E. pyrifoliae causing bacterial shoo...

    Authors: Michael Kube, Alexander M Migdoll, Isabel Gehring, Katja Heitmann, Yvonne Mayer, Heiner Kuhl, Florian Knaust, Klaus Geider and Richard Reinhardt
    Citation: BMC Genomics 2010 11:393
  30. Controlling sex ratios is essential for the aquaculture industry, especially in those species with sex dimorphism for relevant productive traits, hence the importance of knowing how the sexual phenotype is est...

    Authors: Diego Robledo, Laia Ribas, Rosa Cal, Laura Sánchez, Francesc Piferrer, Paulino Martínez and Ana Viñas
    Citation: BMC Genomics 2015 16:973
  31. Infection with Toxoplasma gondii is thought to damage the brain and be a risk factor for neurological and psychotic disorders. The immune response-participating chemokine system has recently been considered vital...

    Authors: Kaoru Kobayashi, Kousuke Umeda, Fumiaki Ihara, Sachi Tanaka, Junya Yamagishi, Yutaka Suzuki and Yoshifumi Nishikawa
    Citation: BMC Genomics 2019 20:705
  32. Acinetobacter baumannii is a significant hospital pathogen, particularly due to the dissemination of highly multidrug resistant isolates. Genome data have revealed that A. baumannii is highly genetically diverse,...

    Authors: Bart A Eijkelkamp, Uwe H Stroeher, Karl A Hassan, Ian T Paulsen and Melissa H Brown
    Citation: BMC Genomics 2014 15:1020
  33. Several studies suggested that the diploid ancestor of the B genome of tetraploid and hexaploid wheat species belongs to the Sitopsis section, having Aegilops speltoides (SS, 2n = 14) as the closest identified re...

    Authors: Jérome Salse, Véronique Chagué, Stéphanie Bolot, Ghislaine Magdelenat, Cécile Huneau, Caroline Pont, Harry Belcram, Arnaud Couloux, Soazic Gardais, Aurélie Evrard, Béatrice Segurens, Mathieu Charles, Catherine Ravel, Sylvie Samain, Gilles Charmet, Nathalie Boudet…
    Citation: BMC Genomics 2008 9:555
  34. Type 2 Diabetes Mellitus (T2DM) is a non insulin dependent, complex trait disease that develops due to genetic predisposition and environmental factors. The advanced stage in type 2 diabetes mellitus leads to ...

    Authors: Shipra Agrawal, Nevenka Dimitrova, Prasanthi Nathan, K Udayakumar, S Sai Lakshmi, S Sriram, N Manjusha and Urmi Sengupta
    Citation: BMC Genomics 2008 9:320
  35. The main bottleneck for genomic studies of tumors is the limited availability of fresh frozen (FF) samples collected from patients, coupled with comprehensive long-term clinical follow-up. This shortage could ...

    Authors: Noa Bossel Ben-Moshe, Shlomit Gilad, Gili Perry, Sima Benjamin, Nora Balint-Lahat, Anya Pavlovsky, Sharon Halperin, Barak Markus, Ady Yosepovich, Iris Barshack, Einav Nili Gal-Yam, Eytan Domany, Bella Kaufman and Maya Dadiani
    Citation: BMC Genomics 2018 19:419
  36. The quorum-sensing molecule farnesol, in opportunistic yeast Candida albicans, modulates its dimorphic switch between yeast and hyphal forms, and biofilm formation. Although there is an increasing interest in far...

    Authors: Sima Mohammadi, Annie Leduc, Steve J. Charette, Jean Barbeau and Antony T. Vincent
    Citation: BMC Genomics 2023 24:93
  37. Microarray analyses allow the identification and assessment of molecular signatures in whole tissues undergoing pathological processes. To better understand cerebral malaria pathogenesis, we investigated intra...

    Authors: Nicolas F Delahaye, Nicolas Coltel, Denis Puthier, Mathieu Barbier, Philippe Benech, Florence Joly, Fuad A Iraqi, Georges E Grau, Catherine Nguyen and Pascal Rihet
    Citation: BMC Genomics 2007 8:452
  38. Genomes of E. coli, including that of the human pathogen Escherichia coli O157:H7 (EHEC) EDL933, still harbor undetected protein-coding genes which, apparently, have escaped annotation due to their small size and...

    Authors: Klaus Neuhaus, Richard Landstorfer, Lea Fellner, Svenja Simon, Andrea Schafferhans, Tatyana Goldberg, Harald Marx, Olga N. Ozoline, Burkhard Rost, Bernhard Kuster, Daniel A. Keim and Siegfried Scherer
    Citation: BMC Genomics 2016 17:133
  39. The golden birdwing butterfly (Troides aeacus formosanus) is a rarely observed species in Taiwan. Recently, a typical symptom of nuclear polyhedrosis was found in reared T. aeacus larvae. From the previous Kimura...

    Authors: Yu-Feng Huang, Tzu-Han Chen, Zih-Ting Chang, Tai-Chuan Wang, Se Jin Lee, Jong Cheol Kim, Jae Su Kim, Kuo-Ping Chiu and Yu-Shin Nai
    Citation: BMC Genomics 2019 20:419
  40. Malaria control is heavily reliant on the use of insecticides that target and kill the adult female Anopheline vector. The intensive use of insecticides of the pyrethroid class has led to widespread resistance...

    Authors: V. A. Ingham, F. Brown and H. Ranson
    Citation: BMC Genomics 2021 22:337
  41. The male Atlantic salmon generally matures in fresh water upon returning after one or several years at sea. Some fast-growing male parr develop an alternative life strategy where they sexually mature before mi...

    Authors: Aoife Guiry, Denis Flynn, Sophie Hubert, Allan M O'Keeffe, Olivier LeProvost, Samantha L White, Patrick F Forde, Pamela Davoren, Benoit Houeix, Terry J Smith, Deirdre Cotter, Noel P Wilkins and Michael T Cairns
    Citation: BMC Genomics 2010 11:211
  42. Single-cell RNA sequencing (scRNA-seq) has led to remarkable progress in our understanding of tissue heterogeneity in health and disease. Recently, the need for scRNA-seq sample fixation has emerged in many sc...

    Authors: Xinlei Wang, Lei Yu and Angela Ruohao Wu
    Citation: BMC Genomics 2021 22:420

    The Correction to this article has been published in BMC Genomics 2021 22:554

  43. Understanding the genomic features of livestock is essential for successful breeding programs and conservation. This information is scarce for local goat breeds in Egypt. In the current study, genomic regions ...

    Authors: Ahmed M. Sallam, Henry Reyer, Klaus Wimmers, Francesca Bertolini, Adel Aboul-Naga, Camila U. Braz and Alaa Emara Rabee
    Citation: BMC Genomics 2023 24:573
  44. Gene expression variation is a key underlying factor influencing phenotypic variation, and can occur via cis- or trans-regulation. To understand the role of cis- and trans-regulatory variation on population di...

    Authors: Qiong Wang, Yaxiong Jia, Yuan Wang, Zhihua Jiang, Xiang Zhou, Zebin Zhang, Changsheng Nie, Junying Li, Ning Yang and Lujiang Qu
    Citation: BMC Genomics 2019 20:933

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