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6358 result(s) for 'general transcription factors vs specific' within BMC Genomics

Page 93 of 128

  2. Many plant genes have been identified through whole genome and deep transcriptome sequencing and other methods; yet our knowledge on the function of many of these genes remains limited. The integration and ana...

    Authors: Tyler J Wilson, Liming Lai, Yuguang Ban and Steven X Ge
    Citation: BMC Genomics 2012 13:237
    Content type: Research article Published on:

  3. Carotenoids are a heterogeneous group of plant isoprenoids primarily involved in photosynthesis. In plants the cleavage of carotenoids leads to the formation of the phytohormones abscisic acid and strigolacton...

    Authors: Philip R Young, Justin G Lashbrooke, Erik Alexandersson, Dan Jacobson, Claudio Moser, Riccardo Velasco and Melané A Vivier
    Citation: BMC Genomics 2012 13:243
    Content type: Research article Published on:

  4. Small intestine and liver greatly contribute to whole body lipid, cholesterol and phospholipid metabolism but to which extent cholesterol and phospholipid handling in these tissues is affected by high fat West...

    Authors: Charles Desmarchelier, Christoph Dahlhoff, Sylvia Keller, Manuela Sailer, Gerhard Jahreis and Hannelore Daniel
    Citation: BMC Genomics 2012 13:84
    Content type: Research article Published on:

  5. Flax (Linum usitatissimum L.) is an important crop for the production of bioproducts derived from its seed and stem fiber. Transposable elements (TEs) are widespread in plant genomes and are a key component of th...

    Authors: Leonardo Galindo González and Michael K Deyholos
    Citation: BMC Genomics 2012 13:644
    Content type: Research article Published on:

  7. Identification and mapping of repetitive elements is a key step for accurate gene prediction and overall structural annotation of genomes. During the assembly and annotation of three highly repetitive amoeba g...

    Authors: Hernan Lorenzi, Mathangi Thiagarajan, Brian Haas, Jennifer Wortman, Neil Hall and Elisabet Caler
    Citation: BMC Genomics 2008 9:595
    Content type: Research article Published on:

  8. Selection acts on the phenotype, yet only the genotype is inherited. While both the phenotypic and genotypic response to short-term selection can be measured, the link between these is a major unsolved problem...

    Authors: Ken Kraaijeveld, Vicencio Oostra, Maartje Liefting, Bregje Wertheim, Emile de Meijer and Jacintha Ellers
    Citation: BMC Genomics 2018 19:892
    Content type: Research article Published on:

  9. Oxygen-induced retinopathy (OIR) animal model is widely used for retinopathy of prematurity (ROP) researches. The purpose of this study was to identify proteins and related pathways of OIR with or without anti...

    Authors: Zhaokai Xu, Yubo Wu, Jianbo Mao, Yiqi Chen, Huan Chen, Shian Zhang, Jiafeng Yu, Xinyi Deng and Lijun Shen
    Citation: BMC Genomics 2024 25:415
    Content type: Research Published on:

  10. Both male and female pigeons have the ability to produce a nutrient solution in their crop for the nourishment of their young. The production of the nutrient solution has been likened to lactation in mammals, ...

    Authors: Meagan J Gillespie, Volker R Haring, Kenneth A McColl, Paul Monaghan, John A Donald, Kevin R Nicholas, Robert J Moore and Tamsyn M Crowley
    Citation: BMC Genomics 2011 12:452
    Content type: Research article Published on:

  11. The species Xanthomonas translucens encompasses a complex of bacterial strains that cause diseases and yield loss on grass species including important cereal crops. Three pathovars, X. translucens pv. undulosa, X...

    Authors: Zhao Peng, Ying Hu, Jingzhong Xie, Neha Potnis, Alina Akhunova, Jeffrey Jones, Zhaohui Liu, Frank F. White and Sanzhen Liu
    Citation: BMC Genomics 2016 17:21
    Content type: Research article Published on:

  12. The atyid shrimp Paratya australiensis occurs in surface freshwater habitats throughout eastern Australia and has been used to study the ecotoxicology of contaminants such as pesticides and metals. The acidificat...

    Authors: Peter A. Bain, Adrienne L. Gregg and Anupama Kumar
    Citation: BMC Genomics 2016 17:890
    Content type: Research article Published on:

  13. With the availability of rapidly increasing number of genome and transcriptome sequences, lineage-specific genes (LSGs) can be identified and characterized. Like other conserved functional genes, LSGs play imp...

    Authors: Yuantao Xu, Guizhi Wu, Baohai Hao, Lingling Chen, Xiuxin Deng and Qiang Xu
    Citation: BMC Genomics 2015 16:995
    Content type: Research article Published on:

  14. The growth and development of muscle stem cells (MuSCs) are significant events known to affect muscle plasticity, disease, meat production, and meat quality, which involves the types and functions of mRNA and ...

    Authors: Rui-Men Zhang, Yu Pan, Chao-Xia Zou, Qiang An, Juan-Ru Cheng, Peng-Ju Li, Zi-Hua Zheng, Yan Pan, Wan-You Feng, Su-Fang Yang, De-Shun Shi, Ying-Ming Wei and Yan-Fei Deng
    Citation: BMC Genomics 2022 23:267
    Content type: Research Published on:

  16. Different soybean (Glycine max L.) leaf chlorophyll-content traits are considered to be significantly linked to soybean yield. To map the quantitative trait loci (QTLs) of soybean leaf chlorophyll-content traits,...

    Authors: Liang Wang, Brima Conteh, Linzhi Fang, Qiuju Xia and Hai Nian
    Citation: BMC Genomics 2020 21:739
    Content type: Research article Published on:

  17. Long noncoding RNAs (lncRNAs) are now considered important regulatory factors, with a variety of biological functions in many species including insects. Some lncRNAs have the ability to show rapid responses to...

    Authors: Bin Zhu, Manyu Xu, Haiyan Shi, Xiwu Gao and Pei Liang
    Citation: BMC Genomics 2017 18:380
    Content type: Research article Published on:

  18. Spermatozoa are stored in the oviductal functional sperm reservoir in animals with internal fertilization, including zoologically distant classes such as pigs or poultry. They are held fertile in the reservoir...

    Authors: Mohammad Atikuzzaman, Manuel Alvarez-Rodriguez, Alejandro Vicente-Carrillo, Martin Johnsson, Dominic Wright and Heriberto Rodriguez-Martinez
    Citation: BMC Genomics 2017 18:98
    Content type: Research article Published on:

    The Erratum to this article has been published in BMC Genomics 2017 18:563

  19. We used RNA sequencing to analyze transcript profiles of ten autopsy brain regions from ten subjects. RNA sequencing techniques were designed to detect both coding and non-coding RNA, splice isoform compositio...

    Authors: Amy Webb, Audrey C. Papp, Amanda Curtis, Leslie C. Newman, Maciej Pietrzak, Michal Seweryn, Samuel K. Handelman, Grzegorz A. Rempala, Daqing Wang, Erica Graziosa, Rachel F. Tyndale, Caryn Lerman, John R. Kelsoe, Deborah C. Mash and Wolfgang Sadee
    Citation: BMC Genomics 2015 16:990
    Content type: Research article Published on:

  20. Acute Hepatopancreatic Necrosis Disease (AHPND) causes significant mortality in shrimp aquaculture. The infection is primarily instigated by Vibrio parahaemolyticus (Vp) strains carrying a plasmid encoding the bi...

    Authors: Marieke Vandeputte, Sieglinde Coppens, Peter Bossier, Nick Vereecke and Daisy Vanrompay
    Citation: BMC Genomics 2024 25:178
    Content type: Research Published on:

  21. Lung cancer is the most common cause of cancer-related deaths. Tobacco smoke exposure is the strongest aetiological factor associated with lung cancer. In this study, using serial analysis of gene expression (...

    Authors: Raj Chari, Kim M Lonergan, Raymond T Ng, Calum MacAulay, Wan L Lam and Stephen Lam
    Citation: BMC Genomics 2007 8:297
    Content type: Research article Published on:

  22. Economically important growth and meat quality traits in pigs are controlled by cascading molecular events occurring during development and continuing throughout the conversion of muscle to meat. However, litt...

    Authors: Deborah Velez-Irizarry, Sebastian Casiro, Kaitlyn R. Daza, Ronald O. Bates, Nancy E. Raney, Juan P. Steibel and Catherine W. Ernst
    Citation: BMC Genomics 2019 20:3
    Content type: Research article Published on:

  23. Mytilisepta virgata is a marine mussel commonly found along the coasts of Japan. Although this species has been the subject of occasional studies concerning its ecological role, growth...

    Authors: Marco Gerdol, Yuki Fujii, Imtiaj Hasan, Toru Koike, Shunsuke Shimojo, Francesca Spazzali, Kaname Yamamoto, Yasuhiro Ozeki, Alberto Pallavicini and Hideaki Fujita
    Citation: BMC Genomics 2017 18:590
    Content type: Research article Published on:

  24. The mammalian adipose tissue plays a central role in energy-balance control, whereas the avian visceral fat hardly expresses leptin, the key adipokine in mammals. Therefore, to assess the endocrine role of adi...

    Authors: Susanne Bornelöv, Eyal Seroussi, Sara Yosefi, Sharon Benjamini, Shoval Miyara, Mark Ruzal, Manfred Grabherr, Nima Rafati, Anna-Maja Molin, Ken Pendavis, Shane C. Burgess, Leif Andersson and Miriam Friedman-Einat
    Citation: BMC Genomics 2018 19:295
    Content type: Research article Published on:

  25. Shigella flexneri is the major cause of shigellosis in the developing countries. The O-antigen component of the lipopolysaccharide is one of the key virulence determinants required for the pathogenesis of S. flex...

    Authors: Richa Jakhetia, Kaisar A Talukder and Naresh K Verma
    Citation: BMC Genomics 2013 14:677
    Content type: Research article Published on:

  26. Metarhizium anisopliae is an important fungal biocontrol agent of insect pests of agricultural crops. Genomics can aid the successful commercialization of biopesticides by identification of key genes differentiat...

    Authors: Julie A Pattemore, James K Hane, Angela H Williams, Bree AL Wilson, Ben J Stodart and Gavin J Ash
    Citation: BMC Genomics 2014 15:660
    Content type: Research article Published on:

  27. Aeromonas hydrophila is a potential zoonotic pathogen and primary fish pathogen. With overlapping characteristics, multiple isolates are often mislabelled and misclassified. Moreover, the potential pathogenic fac...

    Authors: Furqan Awan, Yuhao Dong, Jin Liu, Nannan Wang, Muhammad Hassan Mushtaq, Chengping Lu and Yongjie Liu
    Citation: BMC Genomics 2018 19:712
    Content type: Research article Published on:

  28. Species of the family Vibrionaceae are ubiquitous in marine environments. Several of these species are important pathogens of humans and marine species. Evidence indicates that genetic exchange plays an important...

    Authors: Timothy G Lilburn, Jianying Gu, Hong Cai and Yufeng Wang
    Citation: BMC Genomics 2010 11:369
    Content type: Research article Published on:

  29. Production of carp dominates world aquaculture. More than 1.1 million tonnes of rohu carp, Labeo rohita (Hamilton), were produced in 2010. Aeromonas hydrophila is a bacterial pathogen causing aeromoniasis in rohu...

    Authors: Nicholas Robinson, Matthew Baranski, Kanta Das Mahapatra, Jatindra Nath Saha, Sweta Das, Jashobanta Mishra, Paramananda Das, Matthew Kent, Mariann Arnyasi and Pramoda Kumar Sahoo
    Citation: BMC Genomics 2014 15:541
    Content type: Research article Published on:

  30. Heat shock proteins (Hsps) are molecular chaperones that are involved in many normal cellular processes and stress responses, and heat shock factors (Hsfs) are the transcriptional activators of Hsps. Hsfs and Hsp...

    Authors: Jin Zhang, Bobin Liu, Jianbo Li, Li Zhang, Yan Wang, Huanquan Zheng, Mengzhu Lu and Jun Chen
    Citation: BMC Genomics 2015 16:181
    Content type: Research article Published on:

  32. Whilst being closely related to the model actinomycete Streptomyces coelicolor A3(2), S. lividans 66 differs from it in several significant and phenotypically observable ways, including antibiotic production. Pre...

    Authors: Richard A Lewis, Emma Laing, Nicholas Allenby, Giselda Bucca, Volker Brenner, Marcus Harrison, Andrzej M Kierzek and Colin P Smith
    Citation: BMC Genomics 2010 11:682
    Content type: Research article Published on:

  33. MicroRNAs (miRNAs) play a pivotal role in coordinating messenger RNA (mRNA) transcription and stability in almost all known biological processes, including the development of the central nervous system. Despit...

    Authors: Sharon L Hollins, Belinda J Goldie, Adam P Carroll, Elizabeth A Mason, Frederick R Walker, Darryl W Eyles and Murray J Cairns
    Citation: BMC Genomics 2014 15:777
    Content type: Research article Published on:

  34. The outcome of cervical artificial insemination (AI) with frozen-thawed semen in sheep is limited by the inability of sperm to traverse the cervix of some ewe breeds. Previous research has demonstrated that ce...

    Authors: Laura Abril-Parreño, Kieran G. Meade, Anette Kristine Krogenæs, Xavier Druart, Sean Fair and Paul Cormican
    Citation: BMC Genomics 2021 22:752
    Content type: Research Published on:

  37. Bats have aroused great interests of researchers for the sake of their advanced echolocation system. However, this highly specialized trait is not characteristic of Old World fruit bats.

    Authors: Dong Dong, Ming Lei, Yang Liu and Shuyi Zhang
    Citation: BMC Genomics 2013 14:916
    Content type: Research article Published on:

  38. Recent progress in exploring the Y-chromosome gene content in humans, mice and cats have suggested that "autosome-to-Y" transposition of the male fertility genes is a recurrent theme during the mammalian Y-chr...

    Authors: Yang Yang, Ti-Cheng Chang, Hiroshi Yasue, Arvind K Bharti, Ernest F Retzel and Wan-Sheng Liu
    Citation: BMC Genomics 2011 12:13
    Content type: Research article Published on:

  39. Selecting genes and pathways indicative of disease is a central problem in computational biology. This problem is especially challenging when parsing multi-dimensional genomic data. A number of tools, such as L1-...

    Authors: Wen Zhang, Ying-wooi Wan, Genevera I Allen, Kaifang Pang, Matthew L Anderson and Zhandong Liu
    Citation: BMC Genomics 2013 14(Suppl 8):S7
    Content type: Research Published on:

    This article is part of a Supplement: Volume 14 Supplement 8

  41. Phloem protein 2 (PP2) proteins play a vital role in the Phloem-based defense (PBD) and participate in many abiotic and biotic stress. However, research on PP2 proteins in cotton is still lacking.

    Authors: Fei Wei, Pengyun Chen, Hongliang Jian, Xiaohao Guo, Xiaoyan Lv, Boying Lian, Mengxi Sun, Li An, Xinyu Dang, Miaoqian Yang, Hongmei Wu, Nan Zhang, Aimin Wu, Hantao Wang, Liang Ma, Xiaokang Fu…
    Citation: BMC Genomics 2023 24:467
    Content type: Research Published on:

  42. Count data derived from high-throughput deoxy-ribonucliec acid (DNA) sequencing is frequently used in quantitative molecular assays. Due to properties inherent to the sequencing process, unnormalized count dat...

    Authors: M. Senthil Kumar, Eric V. Slud, Kwame Okrah, Stephanie C. Hicks, Sridhar Hannenhalli and Héctor Corrada Bravo
    Citation: BMC Genomics 2018 19:799
    Content type: Methodology article Published on:

  43. Pseudomonas syringae is a widespread bacterial species complex that includes a number of significant plant pathogens. Amongst these, P. syringae pv. actinidiae (Psa) initiated a worldwide pandemic in 2008 on cult...

    Authors: Peter A. McAtee, Lara Brian, Ben Curran, Otto van der Linden, Niels J. Nieuwenhuizen, Xiuyin Chen, Rebecca A. Henry-Kirk, Erin A. Stroud, Simona Nardozza, Jay Jayaraman, Erik H. A. Rikkerink, Cris G. Print, Andrew C. Allan and Matthew D. Templeton
    Citation: BMC Genomics 2018 19:822
    Content type: Research article Published on:

  46. Microsatellite (SSR) and single nucleotide polymorphism (SNP) markers are widely used in plant breeding and genomic research. Thus, methods to improve the speed and efficiency of SSR and SNP genotyping are hig...

    Authors: Matthew J Hayden, Thao M Nguyen, Amanda Waterman and Kenneth J Chalmers
    Citation: BMC Genomics 2008 9:80
    Content type: Methodology article Published on:

  47. The gut is a major energy consumer, but a comprehensive overview of the adaptive response to fasting is lacking. Gene-expression profiling, pathway analysis, and immunohistochemistry were therefore carried out...

    Authors: Milka Sokolović, Diederik Wehkamp, Aleksandar Sokolović, Jacqueline Vermeulen, Lisa A Gilhuijs-Pederson, Rachel IM van Haaften, Yuri Nikolsky, Chris TA Evelo, Antoine HC van Kampen, Theodorus BM Hakvoort and Wouter H Lamers
    Citation: BMC Genomics 2007 8:361
    Content type: Research article Published on:

  48. Superoxide dismutase (SOD) is an essential enzyme of the plant antioxidant system that responds to oxidative stresses caused by adverse conditions. Banana is an important staple and economic crop in tropical a...

    Authors: Xin Feng, Zhongxiong Lai, Yuling Lin, Gongti Lai and Conglong Lian
    Citation: BMC Genomics 2015 16:823
    Content type: Research article Published on:

  49. In vitro cell systems together with omics methods represent promising alternatives to conventional animal models for toxicity testing. Transcriptomic and proteomic approaches have been widely applied in vitro but...

    Authors: Ainhoa Ruiz-Aracama, Ad Peijnenburg, Jos Kleinjans, Danyel Jennen, Joost van Delft, Caroline Hellfrisch and Arjen Lommen
    Citation: BMC Genomics 2011 12:251
    Content type: Research article Published on:

  50. While the taxonomy and genomics of environmental strains from the P. fluorescens species-complex has been reported, little is known about P. fluorescens strains from clinical samples. In this report, we provide t...

    Authors: Brittan S. Scales, John R. Erb-Downward, Ian M. Huffnagle, John J. LiPuma and Gary B. Huffnagle
    Citation: BMC Genomics 2015 16:1032
    Content type: Research article Published on:

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